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Midori A. Harris
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Journal Articles
- 2021
- [j22]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm
, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou
, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte
, Deborah A. Siegele, Giulia Antonazzo
, Helen Attrill
, Nick H. Brown, Phani V. Garapati
, Steven J. Marygold
, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone
, Pinglei Zhou, Joshua L. Goodman
, Victor B. Strelets, Jim Thurmond
, Penelope Garmiri
, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio
, Martin Kuiper, Astrid Lægreid, Colin Logie
, Ruth C. Lovering
, Barbara Kramarz
, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow
, Marcus C. Chibucos
, Michelle G. Giglio, Suvarna Nadendla, James B. Munro
, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal
, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras
, Sandra E. Orchard
, Anjali Shrivastava, Hsin-Yu Chang
, Robert D. Finn
, Alex L. Mitchell
, Neil D. Rawlings, Lorna J. Richardson
, Amaia Sangrador-Vegas
, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford
, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek
, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi
, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry
, Stacia R. Engel
, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann
, Pascale Gaudet
, Anne Morgat, Erica Bakker, Tanya Z. Berardini
, Leonore Reiser
, Shabari Subramaniam
, Eva Huala
, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen
, Ghislaine Argoud-Puy, Alex Bateman
, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler
, Lionel Breuza, Alan J. Bridge
, Ramona Britto
, Hema Bye-A-Jee
, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny
, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou
, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko
, Florence Jungo, Kati Laiho, Philippe Le Mercier
, Damien Lieberherr, Antonia Lock
, Yvonne Lussi, Alistair MacDougall, Michele Magrane
, Maria Jesus Martin
, Patrick Masson
, Darren A. Natale
, Nevila Hyka-Nouspikel, Ivo Pedruzzi
, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire
, Elena Speretta
, Shyamala Sundaram, Nidhi Tyagi, Kate Warner
, Rossana Zaru, Cathy H. Wu
, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti
, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe
, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro
, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper
, Justin Elser:
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - 2020
- [j21]Antonia Lock
, Midori A. Harris, Kim Rutherford
, Jacqueline Hayles, Valerie Wood:
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications. Database J. Biol. Databases Curation 2020 (2020) - [j20]Kent A. Shefchek
, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu
, Deepak R. Unni
, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky
, Xingmin Aaron Zhang, James P. Balhoff
, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody
, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick
, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak
, Simon Jupp
, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington
, Clare Pilgrim
, Tim E. Putman
, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia
, James Seager
, Erik Segerdell
, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza
, Sebastian Köhler
, Damian Smedley, Peter N. Robinson
, Christopher J. Mungall, Melissa A. Haendel
, Monica C. Munoz-Torres
, David Osumi-Sutherland
:
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020) - 2019
- [j19]Helen Attrill
, Pascale Gaudet
, Rachael P. Huntley
, Ruth C. Lovering
, Stacia R. Engel
, Sylvain Poux
, Kimberly M. Van Auken, George E. Georghiou
, Marcus C. Chibucos
, Tanya Z. Berardini
, Valerie Wood, Harold J. Drabkin, Petra Fey
, Penelope Garmiri
, Midori A. Harris, Tony Sawford, Leonore Reiser
, Rebecca Tauber, Sabrina Toro
, The Gene Ontology Consortium:
Annotation of gene product function from high-throughput studies using the Gene Ontology. Database J. Biol. Databases Curation 2019: baz007 (2019) - [j18]Antonia Lock
, Kim Rutherford
, Midori A. Harris
, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler
, Valerie Wood
:
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. Nucleic Acids Res. 47(Database-Issue): D821-D827 (2019) - 2015
- [j17]Mark D. McDowall
, Midori A. Harris
, Antonia Lock
, Kim Rutherford
, Daniel M. Staines
, Jürg Bähler, Paul J. Kersey
, Stephen G. Oliver, Valerie Wood
:
PomBase 2015: updates to the fission yeast database. Nucleic Acids Res. 43(Database-Issue): 656-661 (2015) - 2014
- [j16]Kim M. Rutherford
, Midori A. Harris
, Antonia Lock
, Stephen G. Oliver, Valerie Wood
:
Canto: an online tool for community literature curation. Bioinform. 30(12): 1791-1792 (2014) - [j15]Rachael P. Huntley
, Midori A. Harris
, Yasmin Alam-Faruque, Judith A. Blake
, Seth Carbon, Heiko Dietze, Emily C. Dimmer, Rebecca E. Foulger
, David P. Hill, Varsha K. Khodiyar
, Antonia Lock
, Jane Lomax
, Ruth C. Lovering
, Prudence Mutowo-Meullenet
, Tony Sawford, Kimberly Van Auken, Valerie Wood
, Christopher J. Mungall:
A method for increasing expressivity of Gene Ontology annotations using a compositional approach. BMC Bioinform. 15: 155 (2014) - 2013
- [j14]Rama Balakrishnan, Midori A. Harris
, Rachael P. Huntley
, Kimberly Van Auken, J. Michael Cherry
:
A guide to best practices for Gene Ontology (GO) manual annotation. Database J. Biol. Databases Curation 2013 (2013) - [j13]Midori A. Harris
, Antonia Lock
, Jürg Bähler, Stephen G. Oliver, Valerie Wood
:
FYPO: the fission yeast phenotype ontology. Bioinform. 29(13): 1671-1678 (2013) - 2012
- [j12]Robert Hoehndorf
, Midori A. Harris
, Heinrich Herre, Gabriella Rustici
, Georgios V. Gkoutos
:
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. Bioinform. 28(13): 1783-1789 (2012) - [j11]Valerie Wood
, Midori A. Harris
, Mark D. McDowall
, Kim Rutherford
, Brendan W. Vaughan
, Daniel M. Staines
, Martin Aslett, Antonia Lock
, Jürg Bähler, Paul J. Kersey
, Stephen G. Oliver:
PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 40(Database-Issue): 695-699 (2012) - 2011
- [j10]Sabina Leonelli
, Alexander D. Diehl
, Karen R. Christie
, Midori A. Harris
, Jane Lomax
:
How the Gene Ontology Evolves. BMC Bioinform. 12: 325 (2011) - [j9]Christopher J. Mungall
, Michael Bada, Tanya Z. Berardini
, Jennifer I. Deegan, Amelia Ireland, Midori A. Harris
, David P. Hill, Jane Lomax
:
Cross-product extensions of the Gene Ontology. J. Biomed. Informatics 44(1): 80-86 (2011) - 2008
- [j8]Gabrielle A. Reeves
, Karen Eilbeck, Michele Magrane
, Claire O'Donovan
, Luisa Montecchi-Palazzi, Midori A. Harris
, Sandra E. Orchard
, Rafael C. Jiménez
, Andreas Prlic
, Tim J. P. Hubbard, Henning Hermjakob
, Janet M. Thornton
:
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinform. 24(23): 2767-2772 (2008) - 2007
- [j7]John Day-Richter, Midori A. Harris
, Melissa A. Haendel
, Suzanna Lewis
:
OBO-Edit - an ontology editor for biologists. Bioinform. 23(16): 2198-2200 (2007) - 2004
- [j6]Michael Bada, Robert Stevens, Carole A. Goble
, Yolanda Gil
, Michael Ashburner, Judith A. Blake
, J. Michael Cherry, Midori A. Harris
, Suzanna Lewis
:
A short study on the success of the Gene Ontology. J. Web Semant. 1(2): 235-240 (2004) - 2003
- [j5]Catherine Brooksbank
, Evelyn Camon, Midori A. Harris, Michele Magrane
, Maria Jesus Martin
, Nicola J. Mulder
, Claire O'Donovan
, Helen E. Parkinson
, Mary Ann Tuli
, Rolf Apweiler
, Ewan Birney
, Alvis Brazma
, Kim Henrick, Rodrigo Lopez
, Guenter Stoesser, Peter Stoehr
, Graham Cameron:
The European Bioinformatics Institute's data resources. Nucleic Acids Res. 31(1): 43-50 (2003) - 2002
- [j4]Selina S. Dwight, Midori A. Harris, Kara Dolinski
, Catherine A. Ball, Gail Binkley, Karen R. Christie
, Dianna G. Fisk, Laurie Issel-Tarver
, Mark Schroeder, Gavin Sherlock
, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry
:
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 30(1): 69-72 (2002) - 2001
- [j3]Catherine A. Ball, Heng Jin, Gavin Sherlock
, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski
, Selina S. Dwight, Midori A. Harris
, Laurie Issel-Tarver
, Mark Schroeder, David Botstein, J. Michael Cherry
:
Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Res. 29(1): 80-81 (2001) - 2000
- [j2]Catherine A. Ball, Kara Dolinski
, Selina S. Dwight, Midori A. Harris
, Laurie Issel-Tarver
, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock
, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry
:
Integrating functional genomic information into the Saccharomyces Genome Database. Nucleic Acids Res. 28(1): 77-80 (2000) - 1999
- [j1]Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski
, Selina S. Dwight, Midori A. Harris
, Gail Juvik, Alice Malekian, Shannon Roberts, TaiYun Roe, Charles R. Scafe, Mark Schroeder, Gavin Sherlock
, Shuai Weng, Yan Zhu, J. Michael Cherry
, David Botstein:
Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Nucleic Acids Res. 27(1): 74-78 (1999)
Coauthor Index
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