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ORCIDEURASIP Journal on Bioinformatics and Systems Biology, Volume 2009
Volume 2009, 2009
- Sandra Andorf
, Tanja Gärtner, Matthias Steinfath, Hanna Witucka-Wall, Thomas Altmann, Dirk Repsilber:
Towards Systems Biology of Heterosis: A Hypothesis about Molecular Network Structure Applied for the Arabidopsis Metabolome. - Simon Rosenfeld:
Origins of Stochasticity and Burstiness in High-Dimensional Biochemical Networks. - Nicole Radde:
The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem. - Cordula Zeller, Holger Fröhlich, Achim Tresch:
A Bayesian Network View on Nested Effects Models. - Catharina Olsen, Patrick E. Meyer, Gianluca Bontempi:
On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information. - Wei Dai, Mona A. Sheikh, Olgica Milenkovic, Richard G. Baraniuk:
Compressive Sensing DNA Microarrays. - Sophie Schbath, Vincent Lacroix, Marie-France Sagot:
Assessing the Exceptionality of Coloured Motifs in Networks. - Peter van Nes, Domenico Bellomo, Marcel J. T. Reinders, Dick de Ridder:
Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks. - Xin Gao, Daniel Q. Pu, Peter X. K. Song:
Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data. - Muhammad Shoaib B. Sehgal, Iqbal Gondal, Laurence S. Dooley, Ross L. Coppel:
How to Improve Postgenomic Knowledge Discovery Using Imputation. - Dirk Repsilber, Thomas Martinetz, Mats Björklund:
Adaptive Dynamics of Regulatory Networks: Size Matters. - Oliver Ebenhöh, Thomas Handorf:
Functional Classification of Genome-Scale Metabolic Networks. - Mingzhou (Joe) Song, Chris K. Lewis, Eric R. Lance, Elissa J. Chesler, Roumyana Kirova Yordanova, Michael A. Langston, Kerrie H. Lodowski, Susan E. Bergeson:
Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data. - Wentao Zhao, Erchin Serpedin, Edward R. Dougherty:
Spectral Preprocessing for Clustering Time-Series Gene Expressions. - Julien Epps:
A Hybrid Technique for the Periodicity Characterization of Genomic Sequence Data. - Byung-Jun Yoon:
Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints. - Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty:
Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited. - Wentao Zhao, Erchin Serpedin, Edward R. Dougherty:
Identifying Genes Involved in Cyclic Processes by Combining Gene Expression Analysis and Prior Knowledge. - Thang T. Vu, Ulisses M. Braga-Neto:
Is Bagging Effective in the Classification of Small-Sample Genomic and Proteomic Data? - Travis J. Hestilow, Yufei Huang:
Clustering of Gene Expression Data Based on Shape Similarity. - Erchin Serpedin, Javier Garcia-Frías, Yufei Huang, Ulisses M. Braga-Neto:
Applications of Signal Processing Techniques to Bioinformatics, Genomics, and Proteomics. - Kuang Lin, Dirk Husmeier:
Modelling Transcriptional Regulation with a Mixture of Factor Analyzers and Variational Bayesian Expectation Maximization. - Hendrik Hache, Hans Lehrach, Ralf Herwig:
Reverse Engineering of Gene Regulatory Networks: A Comparative Study. - Joachim Selbig, Matthias Steinfath, Dirk Repsilber:
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches. - Zhouyi Xu, Xiaodong Cai:
Stochastic Simulation of Delay-Induced Circadian Rhythms in Drosophila. - Chushin Koh, Fang-Xiang Wu, Gopalan Selvaraj, Anthony J. Kusalik:
Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks. - Youting Sun, Ulisses M. Braga-Neto, Edward R. Dougherty:
Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data - A Model-Based Study. - Anthony Almudevar:
Selection of Statistical Thresholds in Graphical Models.
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