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ORCIDYang Song 0001
- > Home > Persons > Yang Song 0001
Publications
- 2025
[j57]Yuqian Chen, Fan Zhang, Meng Wang, Leo R. Zekelman, Suheyla Cetin Karayumak, Tengfei Xue, Chaoyi Zhang, Yang Song, Jarrett Rushmore, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
TractGraphFormer: Anatomically informed hybrid graph CNN-transformer network for interpretable sex and age prediction from diffusion MRI tractography. Medical Image Anal. 101: 103476 (2025)- 2024
- [j51]Yuqian Chen, Leo R. Zekelman
, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. Medical Image Anal. 94: 103120 (2024) - [i47]Yuqian Chen, Fan Zhang, Meng Wang, Leo R. Zekelman, Suheyla Cetin Karayumak, Tengfei Xue, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Lauren J. O'Donnell:
TractGraphFormer: Anatomically Informed Hybrid Graph CNN-Transformer Network for Classification from Diffusion MRI Tractography. CoRR abs/2407.08883 (2024) - [i46]Ari Tchetchenian, Leo R. Zekelman, Yuqian Chen, Jarrett Rushmore, Fan Zhang, Edward H. Yeterian, Nikos Makris, Yogesh Rathi, Erik Meijering, Yang Song, Lauren J. O'Donnell:
Deep multimodal saliency parcellation of cerebellar pathways: linking microstructure and individual function through explainable multitask learning. CoRR abs/2407.15132 (2024) - 2023
- [j43]Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions. Medical Image Anal. 85: 102759 (2023) - [j41]Yuqian Chen, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation. NeuroImage 273: 120086 (2023) - [c124]Yuqian Chen, Fan Zhang, Leo R. Zekelman, Tengfei Xue, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
Tractgraphcnn: Anatomically Informed Graph CNN for Classification Using Diffusion MRI Tractography. ISBI 2023: 1-5 - [i39]Yuqian Chen, Fan Zhang, Leo R. Zekelman, Tengfei Xue, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Lauren J. O'Donnell:
TractGraphCNN: anatomically informed graph CNN for classification using diffusion MRI tractography. CoRR abs/2301.01911 (2023) - [i35]Yuqian Chen, Leo R. Zekelman, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. CoRR abs/2307.03982 (2023) - 2022
- [j32]Tiange Xiang, Yang Song, Chaoyi Zhang, Dongnan Liu, Mei Chen, Fan Zhang, Heng Huang, Lauren O'Donnell, Weidong Cai:
DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis. IEEE Trans. Medical Imaging 41(8): 2180-2190 (2022) - [c107]Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning. ISBI 2022: 1-5 - [c105]Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell:
White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. MICCAI (1) 2022: 174-184 - [i29]Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
SupWMA: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning. CoRR abs/2201.12528 (2022) - [i24]Yuqian Chen, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation. CoRR abs/2205.00627 (2022) - [i22]Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Tom Weidong Cai, Lauren J. O'Donnell:
White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. CoRR abs/2207.02402 (2022) - [i21]Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell:
Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions. CoRR abs/2207.08975 (2022) - 2021
- [j29]Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai:
PDAM: A Panoptic-Level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images. IEEE Trans. Medical Imaging 40(1): 154-165 (2021) - [c92]Yuqian Chen, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Wojciech Chrzanowski, Weidong Cai:
Celltrack R-CNN: A Novel End-To-End Deep Neural Network For Cell Segmentation And Tracking In Microscopy Images. ISBI 2021: 779-782 - [c85]Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. MICCAI (7) 2021: 497-507 - [i18]Yuqian Chen, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Wojciech Chrzanowski, Weidong Cai:
CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy Images. CoRR abs/2102.10377 (2021) - [i12]Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Tom Weidong Cai, Fan Zhang, Lauren J. O'Donnell:
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. CoRR abs/2107.04938 (2021) - [i9]Tiange Xiang, Yang Song, Chaoyi Zhang, Dongnan Liu, Mei Chen, Fan Zhang, Heng Huang, Lauren O'Donnell, Weidong Cai:
DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis. CoRR abs/2109.05788 (2021) - 2020
- [c79]Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai:
Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-Weighting. CVPR 2020: 4242-4251 - [i5]Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'Donnell, Heng Huang, Mei Chen, Weidong Cai:
Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-weighting. CoRR abs/2005.02066 (2020) - 2019
- [c72]Donghao Zhang, Yang Song, Dongnan Liu, Chaoyi Zhang, Yicheng Wu, Heng Wang, Fan Zhang, Yong Xia, Lauren J. O'Donnell, Weidong Cai:
Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation. Australasian Conference on Artificial Intelligence 2019: 563-573 - [c68]Dongnan Liu, Donghao Zhang, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'Donnell, Weidong Cai:
Nuclei Segmentation via a Deep Panoptic Model with Semantic Feature Fusion. IJCAI 2019: 861-868 - 2018
- [j21]Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborah P. Waber, Borjan A. Gagoski, Kiera Sarill, Hesham M. Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, Lauren J. O'Donnell:
Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis. NeuroImage 171: 341-354 (2018) - [j20]Fan Zhang, Peter Savadjiev, Weidong Cai, Yang Song, Yogesh Rathi, Birkan Tunç, Drew Parker, Tina Kapur, Robert T. Schultz, Nikos Makris, Ragini Verma, Lauren J. O'Donnell:
Whole brain white matter connectivity analysis using machine learning: An application to autism. NeuroImage 172: 826-837 (2018) - [c57]Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren J. O'Donnell, Weidong Cai:
3D Large Kernel Anisotropic Network for Brain Tumor Segmentation. ICONIP (7) 2018: 444-454 - 2017
- [j13]Yang Song, Qing Li, Fan Zhang, Heng Huang, Dagan Feng, Yue Wang, Mei Chen, Weidong Cai:
Dual discriminative local coding for tissue aging analysis. Medical Image Anal. 38: 65-76 (2017) - [c52]Yang Song, Fan Zhang, Qing Li, Heng Huang, Lauren J. O'Donnell, Weidong Cai:
Locally-Transferred Fisher Vectors for Texture Classification. ICCV 2017: 4922-4930 - [c48]Fan Zhang, Pegah Kahali, Yannick Suter, Isaiah Norton, Laura Rigolo, Peter Savadjiev, Yang Song, Yogesh Rathi, Tom Weidong Cai, William M. Wells III, Alexandra J. Golby, Lauren J. O'Donnell:
Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction. ISBI 2017: 774-777 - [c47]Fan Zhang, Isaiah Norton, Weidong Cai, Yang Song, William M. Wells III, Lauren J. O'Donnell:
Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency. ISBI 2017: 796-799 - [c44]Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborah P. Waber, Borjan A. Gagoski, Kiera Sarill, Hesham M. Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, Lauren J. O'Donnell:
Supra-Threshold Fiber Cluster Statistics for Data-Driven Whole Brain Tractography Analysis. MICCAI (1) 2017: 556-565 - [p1]Fan Zhang, Yang Song, Weidong Cai, Adrien Depeursinge, Henning Müller:
Text- and Content-Based Medical Image Retrieval in the VISCERAL Retrieval Benchmark. Cloud-Based Benchmarking of Medical Image Analysis 2017: 237-249 - 2016
- [j9]Fan Zhang, Yang Song, Weidong Cai, Alexander G. Hauptmann, Sidong Liu, Sonia Pujol, Ron Kikinis, Michael J. Fulham, David Dagan Feng, Mei Chen:
Dictionary pruning with visual word significance for medical image retrieval. Neurocomputing 177: 75-88 (2016) - [j8]Fan Zhang, Yang Song, Weidong Cai, Sidong Liu, Siqi Liu, Sonia Pujol, Ron Kikinis, Yong Xia, Michael J. Fulham, David Dagan Feng:
Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging. IEEE Trans. Biomed. Eng. 63(5): 1058-1069 (2016) - [c43]Sidong Liu, Yang Song, Fan Zhang, Dagan Feng, Michael J. Fulham, Tom Weidong Cai:
Clique Identification and Propagation for Multimodal Brain Tumor Image Segmentation. BIH 2016: 285-294 - [c41]Fan Zhang, Peter Savadjiev, Tom Weidong Cai, Yang Song, Ragini Verma, Carl-Fredrik Westin, Lauren J. O'Donnell:
Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. ISBI 2016: 564-567 - [c39]Yang Song, Weidong Cai, Fan Zhang, Heng Huang, David Dagan Feng, Yue Wang, Mei Chen:
Texture analysis of tissue aging using global and cluster constrained local coding. ISBI 2016: 1229-1232 - 2015
- [c38]Fan Zhang, Yang Song, Tom Weidong Cai, Alexander G. Hauptmann, Sidong Liu, Siqi Liu, David Dagan Feng, Mei Chen:
Ranking-Based Vocabulary Pruning in Bag-of-Features for Image Retrieval. ACALCI 2015: 436-445 - [c37]Yang Song, Weidong Cai, Qing Li, Fan Zhang, David Dagan Feng, Heng Huang:
Fusing subcategory probabilities for texture classification. CVPR 2015: 4409-4417 - [c35]Fan Zhang, Yang Song, Weidong Cai, Adrien Depeursinge, Henning Müller:
USYD/HES-SO in the VISCERAL Retrieval Benchmark. MRDM@ECIR 2015: 139-143 - [c34]Fan Zhang, Weidong Cai, Yang Song, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Dagan Feng:
Beating cilia identification in fluorescence microscope images for accurate CBF measurement. ICIP 2015: 4496-4500 - [c32]Yang Song, Weidong Cai, Fan Zhang, Heng Huang, Yun Zhou, David Dagan Feng:
Bone texture characterization with fisher encoding of local descriptors. ISBI 2015: 5-8 - [c31]Fan Zhang, Yang Song, Siqi Liu, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Sidong Liu, David Dagan Feng, Tom Weidong Cai:
Motion Representation of Ciliated Cell Images with Contour-Alignment for Automated CBF Estimation. MICCAI (3) 2015: 300-307 - 2014
- [j5]Fan Zhang, Yang Song, Weidong Cai, Min-Zhao Lee, Yun Zhou, Heng Huang, Shimin Shan, Michael J. Fulham, David Dagan Feng:
Lung Nodule Classification With Multilevel Patch-Based Context Analysis. IEEE Trans. Biomed. Eng. 61(4): 1155-1166 (2014) - [c30]Fan Zhang, Yang Song, Sidong Liu, Sonia Pujol, Ron Kikinis, David Dagan Feng, Tom Weidong Cai:
Latent Semantic Association for Medical Image Retrieval. DICTA 2014: 1-6 - [c27]Fan Zhang, Weidong Cai, Yang Song, Paul M. Young, Daniela Traini, Lucy Morgan, Hui-Xin Ong, Lachlan Buddle, Dagan Feng:
Image-based ciliary beating frequency estimation for therapeutic assessment on defective mucociliary clearance diseases. ISBI 2014: 193-196 - [c26]Weidong Cai, Fan Zhang, Yang Song, Sidong Liu, Lingfeng Wen, Stefan Eberl, Michael J. Fulham, Dagan Feng:
Automated feedback extraction for medical imaging retrieval. ISBI 2014: 907-910 - [c25]Fan Zhang, Yang Song, Weidong Cai, Yun Zhou, Michael J. Fulham, Stefan Eberl, Shimin Shan, Dagan Feng:
A ranking-based lung nodule image classification method using unlabeled image knowledge. ISBI 2014: 1356-1359 - 2013
- [c23]Fan Zhang, Yang Song, Weidong Cai, Yun Zhou, Shimin Shan, Dagan Feng:
Context Curves for Classification of Lung Nodule Images. DICTA 2013: 1-7 - [c20]Fan Zhang, Weidong Cai, Yang Song, Min-Zhao Lee, Shimin Shan, David Dagan Feng:
Overlapping node discovery for improving classification of lung nodules. EMBC 2013: 5461-5464
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