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ORCIDJournal of Biomedical Semantics, Volume 14
Volume 14, Number 1, December 2023
- Antonio José Jimeno-Yepes, Karin Verspoor:
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing. 1 - Leonardo Campillos Llanos:
MedLexSp - a medical lexicon for Spanish medical natural language processing. 2 - Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J. Grondin, Nicole A. Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel:
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. 3 - Enayat Rajabi, Rishi Midha, Jairo Francisco de Souza:
Constructing a knowledge graph for open government data: the case of Nova Scotia disease datasets. 4 - Weixin Xie, Kunjie Fan, Shijun Zhang, Lang Li:
Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature. 5 - Fuqi Xu, Nick S. Juty, Carole A. Goble, Simon Jupp, Helen E. Parkinson
, Mélanie Courtot:
Features of a FAIR vocabulary. 6 - Alban Gaignard, Thomas Rosnet, Frédéric de Lamotte, Vincent Lefort, Marie-Dominique Devignes:
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. 7 - Oshani Seneviratne, Amar K. Das, Shruthi Chari, Nkechinyere N. Agu, Sabbir M. Rashid, Jamie P. McCusker, Jade S. Franklin, Miao Qi, Kristin P. Bennett, Ching-Hua Chen, James A. Hendler, Deborah L. McGuinness:
Semantically enabling clinical decision support recommendations. 8 - Sarah M. Alghamdi, Robert Hoehndorf:
Improving the classification of cardinality phenotypes using collections. 9 - Steve Penn, Jane Lomax, Anneli Karlsson, Vincent Antonucci, Carl-Dieter Zachmann, Samantha Kanza, Stephan C. Schürer, John Turner:
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. 10 - Susana Nunes, Rita Torres Sousa, Catia Pesquita:
Multi-domain knowledge graph embeddings for gene-disease association prediction. 11 - Maryam Basereh, Annalina Caputo, Rob Brennan:
Automatic transparency evaluation for open knowledge extraction systems. 12 - Mariana L. Neves, Antonina Klippert, Fanny Knöspel, Juliane Rudeck, Ailine Stolz, Zsofia Ban, Markus Becker, Kai Diederich, Barbara Grune, Pia Kahnau, Nils Ohnesorge, Johannes Pucher, Gilbert Schönfelder, Bettina Bert, Daniel Butzke:
Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. 13 - Cilia E. Zayas, Justin M. Whorton, Kevin W. Sexton, Charles D. Mabry, S. Clint Dowland, Mathias Brochhausen:
Development and validation of the early warning system scores ontology. 14 - Sara Diaz Benavides, Silvio D. Cardoso, Marcos Da Silveira, Cédric Pruski:
Analysis and implementation of the DynDiff tool when comparing versions of ontology. 15 - Victor Eiti Yamamoto, Juliana Medeiros Destro, Júlio Cesar dos Reis:
Context-based refinement of mappings in evolving life science ontologies. 16 - Elli Papadopoulou, Alessia Bardi, George Kakaletris, Diamadis Tziotzios, Paolo Manghi, Natalia Manola:
Data management plans as linked open data: exploiting ARGOS FAIR and machine actionable outputs in the OpenAIRE research graph. 17 - Gollam Rabby, Jennifer D'Souza, Allard Oelen, Lucie Dvorackova, Vojtech Svátek, Sören Auer:
Impact of COVID-19 research: a study on predicting influential scholarly documents using machine learning and a domain-independent knowledge graph. 18 - Shuxin Zhang, Nirupama Benis, Ronald Cornet:
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases. 19 - Daniel Daza, Dimitrios Alivanistos, Payal Mitra, Thom Pijnenburg, Michael Cochez, Paul Groth:
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs. 20 - César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, Marco Roos:
The use of foundational ontologies in biomedical research. 21
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