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Charles Christoffer
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Journal Articles
- 2022
- [j10]Luca Gagliardi
, Andrea Raffo
, Ulderico Fugacci
, Silvia Biasotti
, Walter Rocchia, Hao Huang, Boulbaba Ben Amor
, Yi Fang, Yuanyuan Zhang, Xiao Wang, Charles Christoffer, Daisuke Kihara, Apostolos Axenopoulos, Stelios K. Mylonas, Petros Daras:
SHREC 2022: Protein-ligand binding site recognition. Comput. Graph. 107: 20-31 (2022) - 2021
- [j9]Andrea Raffo
, Ulderico Fugacci
, Silvia Biasotti
, Walter Rocchia, Yonghuai Liu, Ekpo Otu
, Reyer Zwiggelaar, David Hunter, Evangelia I. Zacharaki, Eleftheria Psatha, Dimitrios Laskos
, Gerasimos Arvanitis
, Konstantinos Moustakas, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin
, Daisuke Kihara, Andrea Giachetti, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le-Thanh, Hai-Dang Nguyen
, Minh-Triet Tran
:
SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties. Comput. Graph. 99: 1-21 (2021) - [j8]Charles Christoffer, Siyang Chen, Vijay Bharadwaj, Tunde Aderinwale, Vidhur Kumar, Matin Hormati, Daisuke Kihara
:
LZerD webserver for pairwise and multiple protein-protein docking. Nucleic Acids Res. 49(Webserver-Issue): 359-365 (2021) - 2020
- [j7]Xiao Wang
, Genki Terashi, Charles Christoffer, Mengmeng Zhu, Daisuke Kihara
:
Protein docking model evaluation by 3D deep convolutional neural networks. Bioinform. 36(7): 2113-2118 (2020) - [j6]Florent Langenfeld
, Yuxu Peng, Yu-Kun Lai, Paul L. Rosin
, Tunde Aderinwale, Genki Terashi, Charles Christoffer, Daisuke Kihara
, Halim Benhabiles
, Karim Hammoudi
, Adnane Cabani
, Féryal Windal, Mahmoud Melkemi
, Andrea Giachetti
, Stelios K. Mylonas
, Apostolos Axenopoulos, Petros Daras, Ekpo Otu, Matthieu Montès
:
SHREC 2020: Multi-domain protein shape retrieval challenge. Comput. Graph. 91: 189-198 (2020) - 2019
- [j5]Xusi Han, Atilla Sit
, Charles Christoffer
, Siyang Chen, Daisuke Kihara
:
A global map of the protein shape universe. PLoS Comput. Biol. 15(4) (2019) - 2018
- [j4]Lenna X. Peterson
, Yoichiro Togawa
, Juan Esquivel-Rodríguez
, Genki Terashi, Charles Christoffer, Amitava Roy
, Woong-Hee Shin
, Daisuke Kihara
:
Modeling the assembly order of multimeric heteroprotein complexes. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j3]Lenna X. Peterson
, Amitava Roy
, Charles Christoffer, Genki Terashi, Daisuke Kihara
:
Modeling disordered protein interactions from biophysical principles. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j2]Woong-Hee Shin
, Charles Christoffer, Ji-Bo Wang, Daisuke Kihara
:
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation. J. Chem. Inf. Model. 56(9): 1676-1691 (2016) - 2015
- [j1]Juan Esquivel-Rodríguez
, Yi Xiong
, Xusi Han, Shuomeng Guang, Charles Christoffer, Daisuke Kihara:
Navigating 3D electron microscopy maps with EM-SURFER. BMC Bioinform. 16: 181:1-181:9 (2015)
Conference and Workshop Papers
- 2021
- [c2]Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles
, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia H. Nguyen, Tuan-Duy H. Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen
, Minh-Triet Tran, Matthieu Montès:
SHREC 2021: Surface-based Protein Domains Retrieval. 3DOR 2021: 19-26 - 2017
- [c1]Na Song, Daniela Craciun, Charles Christoffer, Xusi Han, Daisuke Kihara, Guillaume Levieux, Matthieu Montès
, Hong Qin, Pranjal Sahu, Genki Terashi, Haiguang Liu:
Protein Shape Retrieval. 3DOR@Eurographics 2017
Parts in Books or Collections
- 2020
- [p1]Genki Terashi, Charles Christoffer, Daisuke Kihara:
Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes. Protein-Protein Interaction Networks 2020: 95-112
Reference Works
- 2019
- [r1]Xusi Han, Woong-Hee Shin
, Charles Christoffer, Genki Terashi, Lyman Monroe, Daisuke Kihara:
Study of the Variability of the Native Protein Structure. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 606-619
Coauthor Index
![](https://dblp1.uni-trier.de/img/cog.dark.24x24.png)
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