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ORCIDEncyclopedia of Bioinformatics and Computational Biology 2019
- Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 3. Elsevier 2019, ISBN 978-0-12-811432-2 - Sorayya Malek, Cham Hui, Nanyonga Aziida, Song Cheen, Sooh Toh, Pozi Milow:
Ecosystem Monitoring Through Predictive Modeling. 1-8 - Vijayaraghava Seshadri Sundararajan:
Large Scale Ecological Modeling With Viruses: A Review. 9-16 - Lena Takayasu, Wataru Suda, Masahira Hattori:
Mapping the Environmental Microbiome. 17-28 - Nor Azlan Nor Muhammad
:
Biological Database Searching. 29-38 - Guanglan Zhang, Derin B. Keskin, Lou Chitkushev:
Extraction of Immune Epitope Information. 39-46 - Pradeep Kumar Tiwari, Sonal Gupta, Anuj Kumar, Mansi Sharma, Vijayaraghava Seshadri Sundararajan, Shanker L. Kothari, Sandeep K. Mathur, Krishna M. Medicherla, Prashanth Suravajhala, Babita Malik:
Characterizing and Functional Assignment of Noncoding RNAs. 47-59 - Vijayaraghava Seshadri Sundararajan, Shweta Shrotriya, Monisha Singhal, Pragya Chaturvedi, Prashanth Suravajhala:
Identification and Extraction of Biomarker Information. 60-65 - Ayako Yachie-Kinoshita, Sucheendra K. Palaniappan, Samik Ghosh:
Computational Systems Biology Applications. 66-73 - Petter Holland, Jens Nielsen, Thierry D. G. A. Mondeel, Matteo Barberis:
Coupling Cell Division to Metabolic Pathways Through Transcription. 74-93 - Amir Feisal Merican, Hoda Mirsafian, Adiratna Mat Ripen, Saharuddin Bin Mohamad:
Studies of Body Systems. 94-102 - Dean Southwood, Shoba Ranganathan:
Host-Pathogen Interactions. 103-112 - Yosvany López, Piotr J. Kamola, Ronesh Sharma, Daichi Shigemizu, Tatsuhiko Tsunoda, Alok Sharma:
Computational Pipelines and Workflows in Bioinformatics. 113-134 - Chuang Kee Ong, Russell S. Hamilton:
Constructing Computational Pipelines. 135-143 - Chuang Kee Ong, Qi Bin Kwong, Ai Ling Ong, Huey Ying Heng, Wai Yee Low:
Pipeline of High Throughput Sequencing. 144-151 - Alan Christoffels, Peter van Heusden:
Genome Annotation: Perspective From Bacterial Genomes. 152-156 - Ranjeev Hari, Suhanya Parthasarathy:
Next Generation Sequencing Data Analysis. 157-163 - Anita Sathyanarayanan, Srikanth Manda, Mukta Poojary, Shivashankar H. Nagaraj:
Exome Sequencing Data Analysis. 164-175 - Rui Yin, Chee Keong Kwoh, Jie Zheng:
Whole Genome Sequencing Analysis. 176-183 - Arpita Ghosh, Aditya Mehta, Asif M. Khan:
Metagenomic Analysis and its Applications. 184-193 - Lokesh P. Tripathi, Tsuyoshi Esaki, Mari N. Itoh, Yi-An Chen, Kenji Mizuguchi:
Integrative Analysis of Multi-Omics Data. 194-199 - Toral Manvar, Vijay Lakhujani:
Profiling the Gut Microbiome: Practice and Potential. 200-217 - Srikanth Manda, Daliah Michael, Sudhir Jadhao, Shivashankar H. Nagaraj:
Functional Enrichment Analysis. 218-229 - Ranjeev Hari, Suhanya Parthasarathy:
Prediction of Coding and Non-Coding RNA. 230-240 - Li C. Chong, Asif M. Khan:
Vaccine Target Discovery. 241-251 - Amara Jabeen, Abidali Mohamedali, Shoba Ranganathan:
Protocol for Protein Structure Modelling. 252-272 - Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan:
Structure-Based Drug Design Workflow. 273-282 - Lokesh P. Tripathi, Yi-An Chen, Kenji Mizuguchi, Yoichi Murakami:
Network-Based Analysis for Biological Discovery. 283-291 - Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus:
Sequence Analysis. 292-322 - Jin Xing Lim, Bryan T. Li, Maurice H. T. Ling:
Sequence Composition. 323-326 - Raimi M. Redwan, Suhanya Parthasarathy, Ranjeev Hari:
Codon Usage. 327-331 - Michael Gribskov:
Identification of Sequence Patterns, Motifs and Domains. 332-340 - Malwina Prater, Russell S. Hamilton:
Epigenetics: Analysis of Cytosine Modifications at Single Base Resolution. 341-353 - Yutaka Saito:
Comparative Epigenomics. 354-362 - Fotis Tsetsos, Petros Drineas, Peristera Paschou:
Genetics and Population Analysis. 363-378 - Zen H. Lu, Naeem Shafqat, Nani Azman, Mark I. R. Petalcorin, Lie Chen:
Population Analysis of Pharmacogenetic Polymorphisms. 379-387 - Jieming Chen, Akdes Serin Harmanci, Arif O. Harmanci:
Detecting and Annotating Rare Variants. 388-399 - Marwa S. Hassan, Abdalhameed A. Shaalan, Moawad I. Dessouky, Abdelaziz Elsaid Abdelnaiem, Dalia A. Abdel-Haleem, Mahmoud ElHefnawi:
Predicting Non-Synonymous Single Nucleotide Variants Pathogenic Effects in Human Diseases. 400-409 - Fransiskus Xaverius Ivan, Chee-Keong Kwoh, Vincent T. K. Chow, Jie Zheng:
Genome Analysis - Identification of Genes Involved in Host-Pathogen Protein-Protein Interaction Networks. 410-424 - Hui San Ong:
Comparative Genomics Analysis. 425-431 - Srilakshmi Srinivasan, Jyotsna Batra:
Single Nucleotide Polymorphism Typing. 432-440 - Yongshuai Jiang, Jing Xu:
Genome-Wide Haplotype Association Study. 441-446 - Kenta Nakai:
Prediction of Protein-Binding Sites in DNA Sequences. 447-451 - Sung-J. Park:
Genome-Wide Scanning of Gene Expression. 452-462 - Camila Pereira Braga, Jiri Adamec:
Metabolome Analysis. 463-475 - Tiratha Raj Singh, Ankita Shukla, Taoufik Bensellak, Ahmed Moussa, Brigitte Vannier:
Disease Biomarker Discovery. 476-488 - Md. Altaf-Ul-Amin, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein:
Investigating Metabolic Pathways and Networks. 489-503 - Prasun Kumar, Swagata Halder, Manju Bansal:
Biomolecular Structures: Prediction, Identification and Analyses. 504-534 - Effirul I. Ramlan, Mohd Firdaus Raih:
Engineering of Supramolecular RNA Structures. 535-545 - Hazrina Yusof Hamdani, Zatil H. Yahaya, Mohd Firdaus Raih:
Predicting RNA-RNA Interactions in Three-Dimensional Structures. 546-553 - Chyan Leong Ng, Mohd Firdaus Raih:
Applications of Ribosomal RNA Sequence and Structure Analysis for Extracting Evolutionary and Functional Insights. 554-567 - Munyati Othman, Siuk M. Ng, Mohd Firdaus Raih:
Computational Design and Experimental Implementation of Synthetic Riboswitches and Riboregulators. 568-573 - Xiaojing Huo, Jeremy Ng, Mingchen Tan, Greg Tucker-Kellogg:
Genome-Wide Probing of RNA Structure. 574-585 - Nicolas Palopoli:
Assessment of Structure Quality (RNA and Protein). 586-605 - Xusi Han, Woong-Hee Shin, Charles Christoffer, Genki Terashi, Lyman Monroe, Daisuke Kihara:
Study of the Variability of the Native Protein Structure. 606-619 - Mohd Firdaus Raih, Nur Syatila Abdul Ghani:
Identifying Functional Relationships Via the Annotation and Comparison of Three-Dimensional Amino Acid Arrangements in Protein Structures. 620-630 - Jaspreet Kaur Dhanjal, Vidhi Malik, Navaneethan Radhakrishnan, Moolchand Sigar, Anjani Kumari, Durai Sundar:
Computational Protein Engineering Approaches for Effective Design of New Molecules. 631-643 - Ragothaman Yennamalli:
Protein Design. 644-651 - Sy Bing Choi, Beow Keat Yap, Yee-Siew Choong, Habibah A. Wahab:
Molecular Dynamics Simulations in Drug Discovery. 652-665 - Adeel Malik, Mohammad H. Baig, Balachandran Manavalan:
Protein-Carbohydrate Interactions. 666-677 - Nur S. A. Ghani, Mohd Firdaus Raih, Shandar Ahmad:
Computational Prediction of Nucleic Acid Binding Residues From Sequence. 678-687 - Upadhyayula S. Raghavender, Ravindranath S. Rathore:
Protein-Peptide Interactions in Regulatory Events. 688-696 - Xuefeng Cui, Yaosen Min:
Homologous Protein Detection. 697-705 - Biswa Ranjan Meher, Megha Vaishnavi, Mattaparthi Venkata Satish Kumar, Seema Patel, Sandeep Kaushik:
Mutation Effects on 3D-Structural Reorganization Using HIV-1 Protease as a Case Study. 706-721 - Shuhaila Mat-Sharani, Doris H. X. Quay, Chyan L. Ng, Mohd Firdaus Raih:
Structural Genomics. 722-728 - Chian Teo, Zalikha Ibrahim, Mohd Basyaruddin Abdul Rahman, Bimo Ario Tejo:
Structure-Based Design of Peptide Inhibitors for Protein Arginine Deiminase Type IV (PAD4). 729-740 - Vartika Tomar, Mohit Mazumder, Ramesh Chandra, Jian Yang, Meena K. Sakharkar:
Small Molecule Drug Design. 741-760 - Beow Keat Yap, Chong-Yew Lee, Sy Bing Choi, Ezatul E. Kamarulzaman, Maywan Hariono, Habibah A. Wahab:
In Silico Identification of Novel Inhibitors. 761-779 - Ammu P. Kumar, Suryani Lukman, Minh N. Nguyen:
Drug Repurposing and Multi-Target Therapies. 780-791 - Anuj Srivastava, Joshy George, R. Krishna Murthy Karuturi:
Transcriptome Analysis. 792-805 - Y-h. Taguchi:
Regulation of Gene Expression. 806-813 - Y-h. Taguchi:
Comparative Transcriptomics Analysis. 814-818 - Bryan T. Li, Jin X. Lim, Maurice H. T. Ling:
Analyzing Transcriptome-Phenotype Correlations. 819-824 - Dwi A. Pujianto:
Transcriptome During Cell Differentiation. 825-829 - Adison Wong, Maurice H. T. Ling:
Characterization of Transcriptional Activities. 830-841 - Maurice H. T. Ling:
Survey of Antisense Transcription. 842-846 - Rubbiya Ali, Ali Naqi, Sarah Ali, Mashal Fatima, Musarat Ishaq, Ahmed M. Mehdi:
Statistical and Probabilistic Approaches to Predict Protein Abundance. 847-854 - Zainab Noor, Abidali Mohamedali, Shoba Ranganathan:
Identification of Proteins From Proteomic Analysis. 855-870 - Zainab Noor, Subash Adhikari, Shoba Ranganathan, Abidali Mohamedali:
Quantification of Proteins From Proteomic Analysis. 871-890 - David I. Cantor, Harish Reddy Cheruku:
Utilising IPG-IEF to Identify Differentially-Expressed Proteins. 891-910 - Marwenie F. Petalcorin, Naeem Shafqat, Zen H. Lu, Mark I. R. Petalcorin:
Clinical Proteomics. 911-925 - Mun Fai Loke, Aimi Hanafi:
Molecular Mechanisms Responsible for Drug Resistance. 926-931 - Lokesh P. Tripathi, Yi-An Chen, Kenji Mizuguchi, Eiji Morita:
Network-Based Analysis of Host-Pathogen Interactions. 932-937 - Himakshi Sarma, Sushmita Pradhan, Mattaparthi Venkata Satish Kumar, Sandeep Kaushik:
Phylogenetic Analysis: Early Evolution of Life. 938-952 - Suhaila Sulaiman, Nur S. Yusoff, Ng S. Mun, Haslina Makmur, Mohd Firdaus Raih:
Inference of Horizontal Gene Transfer: Gaining Insights Into Evolution via Lateral Acquisition of Genetic Material. 953-964 - Tiratha Raj Singh, Ankush Bansal:
Gene Duplication and Speciation. 965-974 - Vijayaraghava Seshadri Sundararajan:
Epidemiology: A Review. 975-979 - William R. Pearson:
Identification of Homologs. 980-984 - John-James Wilson, Kong-Wah Sing, Narong Jaturas:
DNA Barcoding: Bioinformatics Workflows for Beginners. 985-995 - Raul Rodriguez-Esteban:
Text Mining Applications. 996-1000
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