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Journal Articles
- 2015
[j19]Feixiong Cheng
, Chuang Liu, Chen-Ching Lin, Junfei Zhao, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao:
A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types. PLoS Comput. Biol. 11(9) (2015)- 2013
- [j18]Misook Ha, Soondo Hong, Wen-Hsiung Li:
Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context. Bioinform. 29(9): 1199-1205 (2013) - 2012
- [j17]Sung-Chou Li, Kuo-Wang Tsai, Hung-Wei Pan, Yung-Ming Jeng, Meng-Ru Ho, Wen-Hsiung Li:
MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. BMC Syst. Biol. 6(S-2): S14 (2012) - [j16]Yan Yuan Tseng, Wen-Hsiung Li:
PSC: protein surface classification. Nucleic Acids Res. 40(Web-Server-Issue): 435-439 (2012) - 2010
- [j15]Yan Yuan Tseng, Z. Jeffrey Chen, Wen-Hsiung Li:
fPOP: footprinting functional pockets of proteins by comparative spatial patterns. Nucleic Acids Res. 38(Database-Issue): 288-295 (2010) - 2009
- [j14]Yan Yuan Tseng, Craig Dupree, Z. Jeffrey Chen, Wen-Hsiung Li:
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns. Nucleic Acids Res. 37(Web-Server-Issue): 384-389 (2009) - 2008
- [j13]Jengnan Tzeng, Henry Horng-Shing Lu, Wen-Hsiung Li:
Multidimensional scaling for large genomic data sets. BMC Bioinform. 9 (2008) - [j12]Wei-Sheng Wu, Wen-Hsiung Li:
Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinform. 9 (2008) - 2007
- [j11]Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-Sen Chen:
A systematic approach to detecting transcription factors in response to environmental stresses. BMC Bioinform. 8 (2007) - [j10]Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen:
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - [j9]Huai-Kuang Tsai, Meng-Yuan Chou, Ching Hua Shih, Grace Tzu-Wei Huang, Tien-Hsien Chang, Wen-Hsiung Li:
MYBS: a comprehensive web server for mining transcription factor binding sites in yeast. Nucleic Acids Res. 35(Web-Server-Issue): 221-226 (2007) - [j8]Bor-Sen Chen, Wan-Shian Wu, Yu-Chao Wang, Wen-Hsiung Li:
On the Robust Circuit Design Schemes of Biochemical Networks: Steady-State Approach. IEEE Trans. Biomed. Circuits Syst. 1(2): 91-104 (2007) - 2006
- [j7]Huai-Kuang Tsai, Grace Tzu-Wei Huang, Meng-Yuan Chou, Henry Horng-Shing Lu, Wen-Hsiung Li:
Method for identifying transcription factor binding sites in yeast. Bioinform. 22(14): 1675-1681 (2006) - [j6]Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen:
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinform. 7: 421 (2006) - 2005
- [j5]Te-Ming Chen, Chung-Chin Lu, Wen-Hsiung Li:
Prediction of splice sites with dependency graphs and their expanded bayesian networks. Bioinform. 21(4): 471-482 (2005) - [j4]Bor-Sen Chen, Yu-Chao Wang, Wei-Sheng Wu, Wen-Hsiung Li:
A new measure of the robustness of biochemical networks. Bioinform. 21(11): 2698-2705 (2005) - [j3]Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-Sen Chen:
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification. BMC Bioinform. 6: 258 (2005) - 2004
- [j2]Hong-Chu Chen, Hsiao-Ching Lee, Tsai-Yun Lin, Wen-Hsiung Li, Bor-Sen Chen:
Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle. Bioinform. 20(12): 1914-1927 (2004) - 2003
- [j1]Anton Nekrutenko, Wen-Yu Chung, Wen-Hsiung Li:
ETOPE: evolutionary test of predicted exons. Nucleic Acids Res. 31(13): 3564-3567 (2003)
Conference and Workshop Papers
- 2006
- [c2]Wen-Hsiung Li:
On the Inference of Regulatory Elements, Circuits, and Modules. APBC 2006: 1 - 2005
- [c1]Jake K. Byrnes, Wen-Hsiung Li:
Patterns of Gene Deletion following Genome Duplication in Yeast. CSB Workshops 2005: 25-26
Coauthor Index
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