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ORCIDGéraldine Jean
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2020 – today
- 2025
[j21]Guillaume Fertin, Géraldine Jean
, Anthony Labarre:
Sorting genomes by prefix double-cut-and-joins. Theor. Comput. Sci. 1024: 114909 (2025)- 2024
- [j20]Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Zanoni Dias:
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs. J. Heuristics 30(5): 269-289 (2024) - [j19]Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette:
The Maximum Zero-Sum Partition problem. Theor. Comput. Sci. 1019: 114811 (2024) - 2023
- [j18]Grégoire Prunier, Mehdi Cherkaoui, Albane Lysiak, Olivier Langella, Mélisande Blein-Nicolas, Virginie Lollier, Emile Benoist, Géraldine Jean, Guillaume Fertin, Hélène Rogniaux, Dominique Tessier:
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinform. 24(1): 421 (2023) - [j17]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. J. Comput. Biol. 30(8): 861-876 (2023) - [j16]Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Approximation algorithms for sorting by k-cuts on signed permutations. J. Comb. Optim. 45(1): 6 (2023) - [c14]Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias:
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. ISBRA 2023: 241-254 - 2022
- [c13]Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette:
The Maximum Zero-Sum Partition Problem. ICS 2022: 73-85 - [c12]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. ISBRA 2022: 100-113 - [c11]Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting by k-Cuts on Signed Permutations. RECOMB-CG 2022: 189-204 - [c10]Guillaume Fertin, Géraldine Jean, Anthony Labarre:
Sorting Genomes by Prefix Double-Cut-and-Joins. SPIRE 2022: 178-190 - [c9]Emile Benoist, Guillaume Fertin, Géraldine Jean:
The Exact Subset MultiCover Problem. TAMC 2022: 189-200 - [i1]Guillaume Fertin, Géraldine Jean, Anthony Labarre:
Sorting Genomes by Prefix Double-Cut-and-Joins. CoRR abs/2208.14315 (2022) - 2021
- [j15]Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz:
Sorting by Multi-Cut Rearrangements. Algorithms 14(6): 169 (2021) - [j14]Albane Lysiak, Guillaume Fertin, Géraldine Jean, Dominique Tessier:
Evaluation of open search methods based on theoretical mass spectra comparison. BMC Bioinform. 22-S(2): 65 (2021) - [j13]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Sorting Permutations by Intergenic Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2080-2093 (2021) - [j12]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias:
Sorting Signed Permutations by Intergenic Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2870-2876 (2021) - [j11]Guillaume Fertin, Julien Fradin, Géraldine Jean:
The Maximum Colorful Arborescence problem: How (computationally) hard can it be? Theor. Comput. Sci. 852: 104-120 (2021) - [c8]Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz:
Sorting by Multi-cut Rearrangements. SOFSEM 2021: 593-607 - 2020
- [j10]Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. J. Comput. Biol. 27(2): 156-174 (2020) - [c7]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB 2020: 16-28
2010 – 2019
- 2019
- [j9]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Super short operations on both gene order and intergenic sizes. Algorithms Mol. Biol. 14(1): 21:1-21:17 (2019) - [c6]Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. ISBRA 2019: 28-39 - 2018
- [j8]Guillaume Fertin, Loïc Jankowiak, Géraldine Jean:
Prefix and suffix reversals on strings. Discret. Appl. Math. 246: 140-153 (2018) - [c5]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Super Short Reversals on Both Gene Order and Intergenic Sizes. BSB 2018: 14-25 - 2017
- [j7]Guillaume Fertin, Géraldine Jean, Eric Tannier:
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes. Algorithms Mol. Biol. 12(1): 16:1-16:11 (2017) - [c4]Guillaume Fertin, Julien Fradin, Géraldine Jean:
Algorithmic Aspects of the Maximum Colorful Arborescence Problem. TAMC 2017: 216-230 - [p1]Géraldine Jean, Andreea Radulescu, Irena Rusu:
The Contig Assembly Problem and Its Algorithmic Solutions. Algorithms for Next-Generation Sequencing Data 2017: 267-298 - 2016
- [c3]Guillaume Fertin, Géraldine Jean, Eric Tannier:
Genome Rearrangements on Both Gene Order and Intergenic Regions. WABI 2016: 162-173 - 2015
- [c2]Guillaume Fertin, Loïc Jankowiak, Géraldine Jean:
Prefix and Suffix Reversals on Strings. SPIRE 2015: 165-176 - 2014
- [j6]Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch:
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinform. 30(9): 1300-1301 (2014) - [j5]Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch:
Oqtans: a multifunctional workbench for RNA-seq data analysis. BMC Bioinform. 15(S-3): A7 (2014) - [c1]Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu:
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph. BIBM 2014: 90-93 - 2011
- [j4]Sebastian J. Schultheiß, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T. Sreedharan, Georg Zeller, Gunnar Rätsch:
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. BMC Bioinform. 12(S-11): A7 (2011) - [j3]Géraldine Jean, Macha Nikolski:
SyDiG: uncovering Synteny in Distant Genomes. Int. J. Bioinform. Res. Appl. 7(1): 43-62 (2011)
2000 – 2009
- 2009
- [j2]Géraldine Jean, David James Sherman, Macha Nikolski:
Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures. J. Comput. Biol. 16(9): 1267-1284 (2009) - 2008
- [b1]Géraldine Jean:
In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction. (Méthodes in silico pour l'étude des réarrangements génomiques : de l'identification de marqueurs communs à la reconstruction ancestrale). University of Bordeaux, France, 2008 - 2007
- [j1]Géraldine Jean, Macha Nikolski:
Genome rearrangements: a correct algorithm for optimal capping. Inf. Process. Lett. 104(1): 14-20 (2007)
Coauthor Index
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