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ORCID19th RECOMB-CG 2022: La Jolla, CA, USA
- Lingling Jin
, Dannie Durand:
Comparative Genomics - 19th International Conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings. Lecture Notes in Computer Science 13234, Springer 2022, ISBN 978-3-031-06219-3
Evolution
- Anne Bergeron, Marie-Jean Meurs, Romy Valiquette-Labonté, Krister M. Swenson:
On the Comparison of Bacteriophage Populations. 3-20 - Zhe Yu, David Sankoff:
Syntenic Dimensions of Genomic Evolution. 21-30
Phylogenetics
- Navid Bin Hasan, Avijit Biswas, Metin Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid:
Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements. 33-51 - Louxin Zhang:
The Sackin Index of Simplex Networks. 52-67 - Yueyu Jiang, Puoya Tabaghi, Siavash Mirarab:
Phylogenetic Placement Problem: A Hyperbolic Embedding Approach. 68-85 - Berk A. Yakici, Huw A. Ogilvie, Luay Nakhleh:
Phylogenetic Network Dissimilarity Measures that Take Branch Lengths into Account. 86-102
Homology and Reconciliation
- Manuel Lafond, Adiesha Liyanage, Binhai Zhu, Peng Zou:
The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes. 105-123 - Yoann Anselmetti, Mattéo Delabre, Nadia El-Mabrouk:
Reconciliation with Segmental Duplication, Transfer, Loss and Gain. 124-145 - Krister M. Swenson, Afif Elghraoui, Faramarz Valafar, Siavash Mirarab, Mathias Weller:
Quantifying Hierarchical Conflicts in Homology Statements. 146-167 - Sumaira Zaman, Mukul S. Bansal:
On Partial Gene Transfer and Its Impact on Gene Tree Reconstruction. 168-186
Genome Rearrangements
- Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting by k-Cuts on Signed Permutations. 189-204 - Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias:
A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. 205-220 - Natalia Petukhova, Alexey Zabelkin, Vitaly Dravgelis, Sergey Aganezov, Nikita Alexeev:
Chromothripsis Rearrangements Are Informed by 3D-Genome Organization. 221-231
Metagenomics
- Liyam Chitayat Levi, Ido Rippin, Moran Ben Tulila, Rotem Galron, Tamir Tuller:
Using Computational Synthetic Biology Tools to Modulate Gene Expression Within a Microbiome. 235-259 - Anuradha Wickramarachchi, Yu Lin:
Metagenomics Binning of Long Reads Using Read-Overlap Graphs. 260-278 - Aniket C. Mane, Mahsa Faizrahnemoon, Cédric Chauve:
A Mixed Integer Linear Programming Algorithm for Plasmid Binning. 279-292
Genomic Sequencing
- Bhavithry Sen Puliparambil, Jabed H. Tomal, Yan Yan:
Benchmarking Penalized Regression Methods in Machine Learning for Single Cell RNA Sequencing Data. 295-310 - Katia Aviña-Padilla, José Antonio Ramírez-Rafael, Octavio Zambada-Moreno, Gabriel Emilio Herrera-Oropeza, Guillermo Romero, Ishaan Gupta, Maribel Hernández-Rosales:
Deciphering the Tissue-Specific Regulatory Role of Intronless Genes Across Cancers. 311-339
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