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ORCIDMonika Heiner
- > Home > Persons > Monika Heiner
Publications
- 2022
[j42]Fei Liu
, Monika Heiner, David R. Gilbert:
Hybrid modelling of biological systems: current progress and future prospects. Briefings Bioinform. 23(3) (2022)- 2021
- [j40]Fei Liu, Wujie Sun, Monika Heiner, David R. Gilbert:
Hybrid modelling of biological systems using fuzzy continuous Petri nets. Briefings Bioinform. 22(1): 438-450 (2021) - [i5]Shannon Connolly, David R. Gilbert, Monika Heiner:
From Epidemic to Pandemic Modelling. CoRR abs/2107.00835 (2021) - 2020
- [j37]Fei Liu, Monika Heiner, David R. Gilbert:
Fuzzy Petri nets for modelling of uncertain biological systems. Briefings Bioinform. 21(1): 198-210 (2020) - 2019
- [j36]Fei Liu, Monika Heiner, David R. Gilbert:
Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems. Briefings Bioinform. 20(3): 877-886 (2019) - [j35]David R. Gilbert, Monika Heiner, Yasoda Jayaweera, Christian Rohr:
Towards dynamic genome-scale models. Briefings Bioinform. 20(4): 1167-1180 (2019) - [j34]David R. Gilbert, Monika Heiner, Leila Ghanbar, Jacek Chodak:
Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking. BMC Bioinform. 20-S(4): 173:1-173:23 (2019) - 2018
- [j33]Riccardo Colombo, Chiara Damiani, David R. Gilbert, Monika Heiner, Giancarlo Mauri, Dario Pescini:
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes. BMC Bioinform. 19-S(7): 45-59 (2018) - [j27]David R. Gilbert, Monika Heiner, Christian Rohr:
Petri-net-based 2D design of DNA walker circuits. Nat. Comput. 17(1): 161-182 (2018) - [c38]Timothy Self, David R. Gilbert, Monika Heiner:
Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models. CMSB 2018: 39-58 - 2015
- [j21]David R. Gilbert, Monika Heiner:
Advances in Computational Methods in Systems Biology. Theor. Comput. Sci. 599: 2-3 (2015) - [j20]Ovidiu Parvu, David R. Gilbert, Monika Heiner, Fei Liu, Nigel J. Saunders, Simon Shaw:
Spatial-Temporal Modelling and Analysis of Bacterial Colonies with Phase Variable Genes. ACM Trans. Model. Comput. Simul. 25(2): 13:1-13:25 (2015) - 2014
- [i4]David R. Gilbert, Monika Heiner, Koichi Takahashi, Adelinde M. Uhrmacher:
Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481). Dagstuhl Reports 4(11): 138-226 (2014) - 2013
- [j16]Qian Gao, David R. Gilbert, Monika Heiner, Fei Liu, Daniele Maccagnola, David Tree:
Multiscale Modeling and Analysis of Planar Cell Polarity in the Drosophila Wing. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 337-351 (2013) - [c33]David R. Gilbert, Monika Heiner, Fei Liu, Nigel J. Saunders:
Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology. Petri Nets 2013: 230-249 - [c31]Ovidiu Parvu, David R. Gilbert, Monika Heiner, Fei Liu, Nigel J. Saunders:
Modelling and Analysis of Phase Variation in Bacterial Colony Growth. CMSB 2013: 78-91 - 2012
- [e6]David R. Gilbert, Monika Heiner:
Computational Methods in Systems Biology - 10th International Conference, CMSB 2012, London, UK, October 3-5, 2012. Proceedings. Lecture Notes in Computer Science 7605, Springer 2012, ISBN 978-3-642-33635-5 [contents] - 2011
- [c25]Monika Heiner, David R. Gilbert:
How Might Petri Nets Enhance Your Systems Biology Toolkit. Petri Nets 2011: 17-37 - [c24]Qian Gao, Fei Liu, David R. Gilbert, Monika Heiner, David Tree:
A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured Petri nets. CMSB 2011: 209-218 - 2010
- [j10]Rainer Breitling, Robin Donaldson, David R. Gilbert, Monika Heiner:
Biomodel Engineering - From Structure to Behavior. Trans. Comp. Sys. Biology 12: 1-12 (2010) - [e4]Corrado Priami, Rainer Breitling, David R. Gilbert, Monika Heiner, Adelinde M. Uhrmacher:
Transactions on Computational Systems Biology XII, Special Issue on Modeling Methodologies. Lecture Notes in Computer Science 5945, Springer 2010, ISBN 978-3-642-11711-4 [contents] - 2009
- [j9]Monika Heiner, Sebastian Lehrack, David R. Gilbert, Wolfgang Marwan:
Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments. Trans. Comp. Sys. Biology 11: 138-163 (2009) - [e3]Rainer Breitling, David Roger Gilbert, Monika Heiner, Corrado Priami:
Formal Methods in Molecular Biology, 22.02. - 27.02.2009. Dagstuhl Seminar Proceedings 09091, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Germany 2009 [contents] - [i3]Rainer Breitling, David Roger Gilbert, Monika Heiner, Corrado Priami:
09091 Abstracts Collection - Formal Methods in Molecular Biology. Formal Methods in Molecular Biology 2009 - [i2]Rainer Breitling, David Roger Gilbert, Monika Heiner, Corrado Priami:
09091 Executive Summary - Formal Methods in Molecular Biology. Formal Methods in Molecular Biology 2009 - [i1]David Roger Gilbert, Rainer Breitling, Monika Heiner:
BioModel Engineering: Its role in Systems Biology and Synthetic Biology. Formal Methods in Molecular Biology 2009 - 2008
- [j8]Rainer Breitling, David R. Gilbert, Monika Heiner, Richard J. Orton:
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways. Briefings Bioinform. 9(5): 404-421 (2008) - [c13]David R. Gilbert, Monika Heiner, Susan Rosser, Rachael Fulton, Xu Gu, Maciej Trybilo:
A Case Study in Model-driven Synthetic Biology. BICC 2008: 163-175 - [c12]David R. Gilbert, Rainer Breitling, Monika Heiner, Robin Donaldson:
An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways. Workshop on Membrane Computing 2008: 13-28 - [c11]Monika Heiner, David R. Gilbert, Robin Donaldson:
Petri Nets for Systems and Synthetic Biology. SFM 2008: 215-264 - 2007
- [c9]David R. Gilbert, Monika Heiner, Sebastian Lehrack:
A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets. CMSB 2007: 200-216 - 2006
- [c8]David R. Gilbert, Monika Heiner:
From Petri Nets to Differential Equations - An Integrative Approach for Biochemical Network Analysis. ICATPN 2006: 181-200
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