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2020 – today
- 2021
[c2]Huyen Le, Junxiu Zhou, Weizhong Zhao, Roger Perkins, Weigong Ge, Beverly Lyn-Cook, Henry Francis, Huixiao Hong, Weida Tong, Wen Zou:
Text Fingerprinting and Topic Mining in the Prescription Opioid Use Literature. BIBM 2021: 2741-2748
2010 – 2019
- 2017
- [c1]Wen Zou
, Weizhong Zhao, James J. Chen, Roger Perkins:
Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents. BCB 2017: 588 - 2016
- [j23]Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou:
A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17: 213 (2016) - [j22]Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou:
Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17: 301 (2016) - 2015
- [j21]Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yijun Ding, Wen Zou:
A heuristic approach to determine an appropriate number of topics in topic modeling. BMC Bioinform. 16(S13): S8 (2015) - 2014
- [j20]Hui Wen Ng, Wenqian Zhang, Mao Shu, Heng Luo, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong:
Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists. BMC Bioinform. 15(S-11): S4 (2014) - [j19]Wenqian Zhang, Joe Meehan, Zhenqiang Su, Hui Wen Ng, Mao Shu, Heng Luo, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong:
Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population. BMC Bioinform. 15(S-11): S6 (2014) - 2013
- [j18]Jie Shen, Wenqian Zhang, Hong Fang, Roger Perkins, Weida Tong, Huixiao Hong:
Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes. BMC Bioinform. 14(S-14): S6 (2013) - 2011
- [j17]Minjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong:
Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. BMC Bioinform. 12(S-10): S3 (2011) - 2010
- [j16]Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong:
The EDKB: an established knowledge base for endocrine disrupting chemicals. BMC Bioinform. 11(S-6): S5 (2010)
2000 – 2009
- 2009
- [j15]Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong:
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. J. Comput. Biol. 16(12): 1671-1688 (2009) - 2008
- [j14]Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong:
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinform. 9(S-9) (2008) - [j13]Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh:
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinform. 9(S-9) (2008) - [j12]Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong:
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinform. 9(S-9) (2008) - [j11]Huixiao Hong, Qian Xie, Weigong Ge, Feng Qian, Hong Fang, Leming Shi, Zhenqiang Su, Roger Perkins, Weida Tong:
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics. J. Chem. Inf. Model. 48(7): 1337-1344 (2008) - 2007
- [j10]Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong:
Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. Comput. Biol. Chem. 31(1): 48-56 (2007) - 2006
- [j9]Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong:
GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data. BMC Bioinform. 7(S-2) (2006) - 2005
- [j8]Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan:
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinform. 6(S-2) (2005) - [j7]Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong:
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinform. 6(S-2) (2005) - [j6]Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano:
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinform. 6(S-2) (2005) - [j5]Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe:
Microarray scanner calibration curves: characteristics and implications. BMC Bioinform. 6(S-2) (2005) - [j4]Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger Perkins, Ze-Zhong Tang, Nan Hu, Philip R. Taylor, Weida Tong:
Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. BMC Bioinform. 6(S-2) (2005) - 2003
- [j3]Weida Tong, Huixiao Hong, Hong Fang, Qian Xie, Roger Perkins:
Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. J. Chem. Inf. Comput. Sci. 43(2): 525-531 (2003) - 2001
- [j2]Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan:
QSAR Models Using a Large Diverse Set of Estrogens. J. Chem. Inf. Comput. Sci. 41(1): 186-195 (2001)
1990 – 1999
- 1998
- [j1]Weida Tong, David R. Lowis, Roger Perkins, Yu Chen, William J. Welsh, Dean W. Goddette, Trevor W. Heritage, Daniel M. Sheehan:
Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor. J. Chem. Inf. Comput. Sci. 38(4): 669-677 (1998)
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