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Publication search results
found 851 matches
- 2023
- Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu:
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq. Genom. Proteom. Bioinform. 21(1): 67-83 (2023) - Guobin Chang, Xiaoya Yuan, Qixin Guo, Hao Bai, Xiaofang Cao, Meng Liu, Zhixiu Wang, Bichun Li, Shasha Wang, Yong Jiang, Zhiquan Wang, Yang Zhang, Qi Xu, Qianqian Song, Rui Pan, Lingling Qiu, Tiantian Gu, Xinsheng Wu, Yulin Bi, Zhengfeng Cao, Yu Zhang, Yang Chen, Hong Li, Jianfeng Liu, Wangcheng Dai, Guohong Chen:
The First Crested Duck Genome Reveals Clues to Genetic Compensation and Crest Cushion Formation. Genom. Proteom. Bioinform. 21(3): 483-500 (2023) - Zhihang Chen, Ziwei Luo, Di Zhang, Huiqin Li, Xuefei Liu, Kaiyu Zhu, Hongwan Zhang, Zongping Wang, Penghui Zhou, Jian Ren, An Zhao, Zhixiang Zuo:
TIGER: A Web Portal of Tumor Immunotherapy Gene Expression Resource. Genom. Proteom. Bioinform. 21(2): 337-348 (2023) - Gang Chen, Salma Mostafa, Zhaogeng Lu, Ran Du, Jiawen Cui, Yun Wang, Qinggang Liao, Jinkai Lu, Xinyu Mao, Bang Chang, Quan Gan, Li Wang, Zhichao Jia, Xiulian Yang, Yingfang Zhu, Jianbin Yan, Biao Jin:
The Jasmine (Jasminum sambac) Genome Provides Insight into the Biosynthesis of Flower Fragrances and Jasmonates. Genom. Proteom. Bioinform. 21(1): 127-149 (2023) - Ye Chen, Yuyan Wang, Ping Zhou, Hao Huang, Rui Li, Zhen Zeng, Zifeng Cui, Rui Tian, Zhuang Jin, Jiashuo Liu, Zhaoyue Huang, Lifang Li, Zheying Huang, Xun Tian, Meiying Yu, Zheng Hu:
VIS Atlas: A Database of Virus Integration Sites in Human Genome from NGS Data to Explore Integration Patterns. Genom. Proteom. Bioinform. 21(2): 300-310 (2023) - Shuai Chen, Jinyang Zhang, Fangqing Zhao:
Screening Linear and Circular RNA Transcripts from Stress Granules. Genom. Proteom. Bioinform. 21(4): 886-893 (2023) - Yixian Cun, Sanqi An, Haiqing Zheng, Jing Lan, Wenfang Chen, Wanjun Luo, Chengguo Yao, Xincheng Li, Xiang Huang, Xiang Sun, Zehong Wu, Yameng Hu, Ziwen Li, Shuxia Zhang, Geyan Wu, Meisongzhu Yang, Miaoling Tang, Ruyuan Yu, Xinyi Liao, Guicheng Gao, Wei Zhao, Jinkai Wang, Jun Li:
Specific Regulation of m6A by SRSF7 Promotes the Progression of Glioblastoma. Genom. Proteom. Bioinform. 21(4): 707-728 (2023) - Ke Ding, Shanwen Sun, Yang Luo, Chaoyue Long, Jingwen Zhai, Yixiao Zhai, Guohua Wang:
PlantCADB: A Comprehensive Plant Chromatin Accessibility Database. Genom. Proteom. Bioinform. 21(2): 311-323 (2023) - Lei Du, Jin Zhang, Ying Zhao, Muheng Shang, Lei Guo, Junwei Han:
inMTSCCA: An Integrated Multi-task Sparse Canonical Correlation Analysis for Multi-omic Brain Imaging Genetics. Genom. Proteom. Bioinform. 21(2): 396-413 (2023) - Shuangsang Fang, Bichao Chen, Yong Zhang, Haixi Sun, Longqi Liu, Shiping Liu, Yuxiang Li, Xun Xu:
Computational Approaches and Challenges in Spatial Transcriptomics. Genom. Proteom. Bioinform. 21(1): 24-47 (2023) - Lorane Le Franc, Bruno Petton, Pascal Favrel, Guillaume Rivière:
m6A Profile Dynamics Indicates Regulation of Oyster Development by m6A-RNA Epitranscriptomes. Genom. Proteom. Bioinform. 21(4): 742-755 (2023) - Jianlei Gu, Jiawei Dai, Hui Lu, Hongyu Zhao:
Comprehensive Analysis of Ubiquitously Expressed Genes in Humans from A Data-driven Perspective. Genom. Proteom. Bioinform. 21(1): 164-176 (2023) - Zuguang Gu, Daniel Hübschmann:
simplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results. Genom. Proteom. Bioinform. 21(1): 190-202 (2023) - Xiao Han, Jia Guo, Mengke Wang, Nan Zhang, Jie Ren, Ying Yang, Xu Chi, Yusheng Chen, Huan Yao, Yongliang Zhao, Yun-Gui Yang, Yingpu Sun, Jiawei Xu:
Dynamic DNA 5-hydroxylmethylcytosine and RNA 5-methycytosine Reprogramming During Early Human Development. Genom. Proteom. Bioinform. 21(4): 805-822 (2023) - Ruobing Han, Lei Han, Xunwu Zhao, Qianghui Wang, Yanling Xia, Heping Li:
Haplotype-resolved Genome of Sika Deer Reveals Allele-specific Gene Expression and Chromosome Evolution. Genom. Proteom. Bioinform. 21(3): 470-482 (2023) - David Earl Hostallero, Lixuan Wei, Liewei Wang, Junmei Cairns, Amin Emad:
Preclinical-to-clinical Anti-cancer Drug Response Prediction and Biomarker Identification Using TINDL. Genom. Proteom. Bioinform. 21(3): 535-550 (2023) - Waleed Iqbal, Wanding Zhou:
Computational Methods for Single-cell DNA Methylome Analysis. Genom. Proteom. Bioinform. 21(1): 48-66 (2023) - Guoli Ji, Qi Tang, Sheng Zhu, Junyi Zhu, Pengchao Ye, Shuting Xia, Xiaohui Wu:
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies. Genom. Proteom. Bioinform. 21(3): 601-618 (2023) - Weilong Kong, Yibin Wang, Shengcheng Zhang, Jiaxin Yu, Xingtan Zhang:
Recent Advances in Assembly of Complex Plant Genomes. Genom. Proteom. Bioinform. 21(3): 427-439 (2023) - Oh Kwang Kwon, In Hyuk Bang, So Young Choi, Ju Mi Jeon, Ann-Yae Na, Yan Gao, Sam Seok Cho, Sung Hwan Ki, Youngshik Choe, Jun Nyung Lee, Yun-Sok Ha, Eun Ju Bae, Tae Gyun Kwon, Byung-Hyun Park, Sangkyu Lee:
LDHA Desuccinylase Sirtuin 5 as A Novel Cancer Metastatic Stimulator in Aggressive Prostate Cancer. Genom. Proteom. Bioinform. 21(1): 177-189 (2023) - Sébastien Leblanc, Marie A. Brunet, Jean-Francois Jacques, Amina M. Lekehal, Andréa Duclos, Alexia Tremblay, Alexis Bruggeman-Gascon, Sondos Samandi, Mylène Brunelle, Alan A. Cohen, Michelle S. Scott, Xavier Roucou:
Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities. Genom. Proteom. Bioinform. 21(3): 515-534 (2023) - Chao Li, Wen Chu, Rafaqat Ali Gill, Shifei Sang, Yuqin Shi, Xuezhi Hu, Yuting Yang, Qamar U. Zaman, Baohong Zhang:
Computational Tools and Resources for CRISPR/Cas Genome Editing. Genom. Proteom. Bioinform. 21(1): 108-126 (2023) - Zhongqiu Li, Yiheng Hu, Xuelian Ma, Lingling Da, Jiajie She, Yue Liu, Xin Yi, Yaxin Cao, Wenying Xu, Yuannian Jiao, Zhen Su:
WheatCENet: A Database for Comparative Co-expression Networks Analysis of Allohexaploid Wheat and Its Progenitors. Genom. Proteom. Bioinform. 21(2): 324-336 (2023) - Jian Li, Weicheng Liang, Zaozao Chen, Xingyu Li, Pan Gu, Anna Liu, Pin Chen, Qiwei Li, Xueyin Mei, Jing Yang, Jun Liu, Lincao Jiang, Zhongze Gu:
OOCDB: A Comprehensive, Systematic, and Real-time Organs-on-a-chip Database. Genom. Proteom. Bioinform. 21(2): 243-258 (2023) - Zidong Liu, Xiaoxu Chen, Pengfei Zhang, Fuyuan Li, Lingkai Zhang, Xueliang Li, Tao Huang, Yi Zheng, Taiyong Yu, Tao Zhang, Wenxian Zeng, Hongzhao Lu, Yinghua Lv:
Transcriptome-wide Dynamics of m6A mRNA Methylation During Porcine Spermatogenesis. Genom. Proteom. Bioinform. 21(4): 729-741 (2023) - Yali Liu, Harry Cheuk-Hay Lau, Wing Yin Cheng, Jun Yu:
Gut Microbiome in Colorectal Cancer: Clinical Diagnosis and Treatment. Genom. Proteom. Bioinform. 21(1): 84-96 (2023) - Zexian Liu, Panqin Wang, Qingfeng Zhang, Shihua Li, Yuxin Zhang, Yutong Guo, Chongchong Jia, Tian Shao, Lin Li, Han Cheng, Zhenlong Wang:
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals. Genom. Proteom. Bioinform. 21(2): 267-277 (2023) - Hao Lu, Luyu Ma, Cheng Quan, Lei Li, Yiming Lu, Gangqiao Zhou, Chenggang Zhang:
RegVar: Tissue-specific Prioritization of Non-coding Regulatory Variants. Genom. Proteom. Bioinform. 21(2): 385-395 (2023) - Ying Lv, Fei Han, Mengxia Liu, Ting Zhang, Guanshen Cui, Jiaojiao Wang, Ying Yang, Yun-Gui Yang, Wenqiang Yang:
Characteristics of N6-methyladenosine Modification During Sexual Reproduction of Chlamydomonas reinhardtii. Genom. Proteom. Bioinform. 21(4): 756-768 (2023) - Renfei Ma, Shangfu Li, Wenshuo Li, Lantian Yao, Hsien-Da Huang, Tzong-Yi Lee:
KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites. Genom. Proteom. Bioinform. 21(1): 228-241 (2023)
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