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Publication search results
found 121 matches
- 2021
- David Schaller
, Manuela Geiß
, Marc Hellmuth
, Peter F. Stadler
:
Best Match Graphs with Binary Trees. AlCoB 2021: 82-93 - Alexsandro Oliveira Alexandrino
, Klairton Lima Brito
, Andre Rodrigues Oliveira
, Ulisses Dias
, Zanoni Dias
:
Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. AlCoB 2021: 121-133 - Ernst Althaus
, Andreas Hildebrandt
, Domenico Mosca
:
Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars. AlCoB 2021: 3-15 - Paola Bonizzoni
, Clelia De Felice
, Alessia Petescia
, Yuri Pirola
, Raffaella Rizzi
, Jens Stoye
, Rocco Zaccagnino
, Rosalba Zizza
:
Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning. AlCoB 2021: 16-28 - Klairton Lima Brito
, Alexsandro Oliveira Alexandrino
, Andre Rodrigues Oliveira
, Ulisses Dias
, Zanoni Dias
:
Reversals Distance Considering Flexible Intergenic Regions Sizes. AlCoB 2021: 134-145 - Wenwen Ju, Chenqi Mou
:
Exploiting Variable Sparsity in Computing Equilibria of Biological Dynamical Systems by Triangular Decomposition. AlCoB 2021: 29-41 - Kaari Landry, Aivee Teodocio, Manuel Lafond, Olivier Tremblay Savard:
Novel Phylogenetic Network Distances Based on Cherry Picking. AlCoB 2021: 57-81 - Yining Liu
, Sachin Kadyan
, Itsik Pe'er
:
A Recovery Algorithm and Pooling Designs for One-Stage Noisy Group Testing Under the Probabilistic Framework. AlCoB 2021: 42-53 - Eleanor Wedell
, Yirong Cai
, Tandy J. Warnow
:
Scalable and Accurate Phylogenetic Placement Using pplacer-XR. AlCoB 2021: 94-105 - James Willson
, Mrinmoy Saha Roddur
, Tandy J. Warnow
:
Comparing Methods for Species Tree Estimation with Gene Duplication and Loss. AlCoB 2021: 106-117 - Yin Yao, Martin C. Frith:
Improved DNA-versus-Protein Homology Search for Protein Fossils. AlCoB 2021: 146-158 - Paul Zaharias
, Vladimir Smirnov
, Tandy J. Warnow
:
The Maximum Weight Trace Alignment Merging Problem. AlCoB 2021: 159-171 - Carlos Martín-Vide
, Miguel A. Vega-Rodríguez
, Travis J. Wheeler
:
Algorithms for Computational Biology - 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings. Lecture Notes in Computer Science 12715, Springer 2021, ISBN 978-3-030-74431-1 [contents] - 2020
- Edward E. Allen, John Farrell, Alexandria F. Harkey, David J. John, Gloria K. Muday, James L. Norris, Bo Wu:
Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions. AlCoB 2020: 143-154 - Md Momin Al Aziz
, Parimala Thulasiraman, Noman Mohammed
:
Parallel Generalized Suffix Tree Construction for Genomic Data. AlCoB 2020: 3-15 - Hannah Brown
, Lei Zuo
, Dan Gusfield
:
Comparing Integer Linear Programming to SAT-Solving for Hard Problems in Computational and Systems Biology. AlCoB 2020: 63-76 - Jiarui Chen, Hong-Hin Cheong, Shirley Weng In Siu:
BESTox: A Convolutional Neural Network Regression Model Based on Binary-Encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds. AlCoB 2020: 155-166 - Remie Janssen
, Mark Jones
, Yukihiro Murakami
:
Combining Networks Using Cherry Picking Sequences. AlCoB 2020: 77-92 - Remie Janssen
, Yukihiro Murakami
:
Linear Time Algorithm for Tree-Child Network Containment. AlCoB 2020: 93-107 - Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen
, Johnathan Wong
, William Hsiao, Cédric Chauve, Leonid Chindelevitch
:
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB 2020: 108-124 - Misagh Kordi, Mukul S. Bansal:
TreeSolve: Rapid Error-Correction of Microbial Gene Trees. AlCoB 2020: 125-139 - Shaoheng Liang
, Qingnan Liang
, Rui Chen
, Ken Chen
:
Stratified Test Alleviates Batch Effects in Single-Cell Data. AlCoB 2020: 167-177 - Sayan Mandal
, Aldo Guzmán-Sáenz
, Niina Haiminen
, Saugata Basu
, Laxmi Parida
:
A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data. AlCoB 2020: 178-187 - Shunfu Mao
, Yihan Jiang
, Edwin Basil Mathew
, Sreeram Kannan:
BOAssembler: A Bayesian Optimization Framework to Improve RNA-Seq Assembly Performance. AlCoB 2020: 188-197 - Andre Rodrigues Oliveira
, Géraldine Jean
, Guillaume Fertin
, Klairton Lima Brito
, Ulisses Dias
, Zanoni Dias
:
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB 2020: 16-28 - Gabriel Siqueira
, Klairton Lima Brito
, Ulisses Dias
, Zanoni Dias
:
Heuristics for Reversal Distance Between Genomes with Duplicated Genes. AlCoB 2020: 29-40 - Lucia Williams
, Brendan Mumey
:
Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics. AlCoB 2020: 41-48 - Zhe Yu, Chunfang Zheng, David Sankoff
:
Gaps and Runs in Syntenic Alignments. AlCoB 2020: 49-60 - Carlos Martín-Vide
, Miguel A. Vega-Rodríguez
, Travis J. Wheeler
:
Algorithms for Computational Biology - 7th International Conference, AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings. Lecture Notes in Computer Science 12099, Springer 2020, ISBN 978-3-030-42265-3 [contents]Due to COVID-19 postponed to AlCoB 2021. - 2019
- Pavel Avdeyev
, Maria Atamanova, Max A. Alekseyev
:
A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems. AlCoB 2019: 97-111
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