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@inproceedings{DBLP:conf/alcob/0001GHS21,
author = {David Schaller and
Manuela Gei{\ss} and
Marc Hellmuth and
Peter F. Stadler},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Best Match Graphs with Binary Trees},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {82--93},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_6},
doi = {10.1007/978-3-030-74432-8\_6},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/0001GHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AlexandrinoBODD21,
author = {Alexsandro Oliveira Alexandrino and
Klairton Lima Brito and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Reversal Distance on Genomes with Different Gene Content and Intergenic
Regions Information},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {121--133},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_9},
doi = {10.1007/978-3-030-74432-8\_9},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AlexandrinoBODD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Althaus0M21,
author = {Ernst Althaus and
Andreas Hildebrandt and
Domenico Mosca},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Learning Molecular Classes from Small Numbers of Positive Examples
Using Graph Grammars},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {3--15},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_1},
doi = {10.1007/978-3-030-74432-8\_1},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Althaus0M21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BonizzoniFPPRSZ21,
author = {Paola Bonizzoni and
Clelia De Felice and
Alessia Petescia and
Yuri Pirola and
Raffaella Rizzi and
Jens Stoye and
Rocco Zaccagnino and
Rosalba Zizza},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as
Representations of Sequencing Reads for Machine Learning},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {16--28},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_2},
doi = {10.1007/978-3-030-74432-8\_2},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BonizzoniFPPRSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BritoAODD21,
author = {Klairton Lima Brito and
Alexsandro Oliveira Alexandrino and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Reversals Distance Considering Flexible Intergenic Regions Sizes},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {134--145},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_10},
doi = {10.1007/978-3-030-74432-8\_10},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BritoAODD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/JuM21,
author = {Wenwen Ju and
Chenqi Mou},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Exploiting Variable Sparsity in Computing Equilibria of Biological
Dynamical Systems by Triangular Decomposition},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {29--41},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_3},
doi = {10.1007/978-3-030-74432-8\_3},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/JuM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LandryTLS21,
author = {Kaari Landry and
Aivee Teodocio and
Manuel Lafond and
Olivier Tremblay Savard},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Novel Phylogenetic Network Distances Based on Cherry Picking},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {57--81},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_5},
doi = {10.1007/978-3-030-74432-8\_5},
timestamp = {Wed, 09 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LandryTLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LiuKP21,
author = {Yining Liu and
Sachin Kadyan and
Itsik Pe'er},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {A Recovery Algorithm and Pooling Designs for One-Stage Noisy Group
Testing Under the Probabilistic Framework},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {42--53},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_4},
doi = {10.1007/978-3-030-74432-8\_4},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LiuKP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WedellCW21,
author = {Eleanor Wedell and
Yirong Cai and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Scalable and Accurate Phylogenetic Placement Using pplacer-XR},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {94--105},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_7},
doi = {10.1007/978-3-030-74432-8\_7},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WedellCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WillsonRW21,
author = {James Willson and
Mrinmoy Saha Roddur and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Comparing Methods for Species Tree Estimation with Gene Duplication
and Loss},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {106--117},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_8},
doi = {10.1007/978-3-030-74432-8\_8},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WillsonRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/YaoF21,
author = {Yin Yao and
Martin C. Frith},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Improved DNA-versus-Protein Homology Search for Protein Fossils},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {146--158},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_11},
doi = {10.1007/978-3-030-74432-8\_11},
timestamp = {Wed, 09 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/YaoF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ZahariasSW21,
author = {Paul Zaharias and
Vladimir Smirnov and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {The Maximum Weight Trace Alignment Merging Problem},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {159--171},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_12},
doi = {10.1007/978-3-030-74432-8\_12},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ZahariasSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2021,
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8},
doi = {10.1007/978-3-030-74432-8},
isbn = {978-3-030-74431-1},
timestamp = {Wed, 09 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AllenFHJMNW20,
author = {Edward E. Allen and
John Farrell and
Alexandria F. Harkey and
David J. John and
Gloria K. Muday and
James L. Norris and
Bo Wu},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis
Thaliana Gene Interactions},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {143--154},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_11},
doi = {10.1007/978-3-030-42266-0\_11},
timestamp = {Tue, 21 Jul 2020 12:07:35 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AllenFHJMNW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AzizTM20,
author = {Md Momin Al Aziz and
Parimala Thulasiraman and
Noman Mohammed},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Parallel Generalized Suffix Tree Construction for Genomic Data},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {3--15},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_1},
doi = {10.1007/978-3-030-42266-0\_1},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AzizTM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BrownZG20,
author = {Hannah Brown and
Lei Zuo and
Dan Gusfield},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Comparing Integer Linear Programming to SAT-Solving for Hard Problems
in Computational and Systems Biology},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {63--76},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_6},
doi = {10.1007/978-3-030-42266-0\_6},
timestamp = {Fri, 15 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BrownZG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ChenCS20,
author = {Jiarui Chen and
Hong{-}Hin Cheong and
Shirley Weng In Siu},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {BESTox: {A} Convolutional Neural Network Regression Model Based on
Binary-Encoded {SMILES} for Acute Oral Toxicity Prediction of Chemical
Compounds},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {155--166},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_12},
doi = {10.1007/978-3-030-42266-0\_12},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/ChenCS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Janssen0M20,
author = {Remie Janssen and
Mark Jones and
Yukihiro Murakami},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Combining Networks Using Cherry Picking Sequences},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {77--92},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_7},
doi = {10.1007/978-3-030-42266-0\_7},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Janssen0M20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/JanssenM20,
author = {Remie Janssen and
Yukihiro Murakami},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Linear Time Algorithm for Tree-Child Network Containment},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {93--107},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_8},
doi = {10.1007/978-3-030-42266-0\_8},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/JanssenM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KatebiFBMLSMNWH20,
author = {Mohsen Katebi and
Pedro Feij{\~{a}}o and
Julius Booth and
Mehrdad Mansouri and
Sean La and
Alex Sweeten and
Reza Miraskarshahi and
Matthew Nguyen and
Johnathan Wong and
William Hsiao and
C{\'{e}}dric Chauve and
Leonid Chindelevitch},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {PathOGiST: {A} Novel Method for Clustering Pathogen Isolates by Combining
Multiple Genotyping Signals},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {108--124},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_9},
doi = {10.1007/978-3-030-42266-0\_9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/KatebiFBMLSMNWH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KordiB20,
author = {Misagh Kordi and
Mukul S. Bansal},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {TreeSolve: Rapid Error-Correction of Microbial Gene Trees},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {125--139},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_10},
doi = {10.1007/978-3-030-42266-0\_10},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/KordiB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LiangLCC20,
author = {Shaoheng Liang and
Qingnan Liang and
Rui Chen and
Ken Chen},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Stratified Test Alleviates Batch Effects in Single-Cell Data},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {167--177},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_13},
doi = {10.1007/978-3-030-42266-0\_13},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/LiangLCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MandalGHBP20,
author = {Sayan Mandal and
Aldo Guzm{\'{a}}n{-}S{\'{a}}enz and
Niina Haiminen and
Saugata Basu and
Laxmi Parida},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {A Topological Data Analysis Approach on Predicting Phenotypes from
Gene Expression Data},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {178--187},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_14},
doi = {10.1007/978-3-030-42266-0\_14},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MandalGHBP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MaoJMK20,
author = {Shunfu Mao and
Yihan Jiang and
Edwin Basil Mathew and
Sreeram Kannan},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {BOAssembler: {A} Bayesian Optimization Framework to Improve RNA-Seq
Assembly Performance},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {188--197},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_15},
doi = {10.1007/978-3-030-42266-0\_15},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MaoJMK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/OliveiraJFBDD20,
author = {Andre Rodrigues Oliveira and
G{\'{e}}raldine Jean and
Guillaume Fertin and
Klairton Lima Brito and
Ulisses Dias and
Zanoni Dias},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {16--28},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_2},
doi = {10.1007/978-3-030-42266-0\_2},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/OliveiraJFBDD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SiqueiraBDD20,
author = {Gabriel Siqueira and
Klairton Lima Brito and
Ulisses Dias and
Zanoni Dias},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Heuristics for Reversal Distance Between Genomes with Duplicated Genes},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {29--40},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_3},
doi = {10.1007/978-3-030-42266-0\_3},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/SiqueiraBDD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WilliamsM20,
author = {Lucia Williams and
Brendan Mumey},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {41--48},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_4},
doi = {10.1007/978-3-030-42266-0\_4},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WilliamsM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/YuZS20,
author = {Zhe Yu and
Chunfang Zheng and
David Sankoff},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Gaps and Runs in Syntenic Alignments},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {49--60},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_5},
doi = {10.1007/978-3-030-42266-0\_5},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/YuZS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2020,
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
publisher = {Springer},
year = {2020},
note = {Due to {COVID-19} postponed to AlCoB 2021.},
url = {https://doi.org/10.1007/978-3-030-42266-0},
doi = {10.1007/978-3-030-42266-0},
isbn = {978-3-030-42265-3},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AvdeyevAA19,
author = {Pavel Avdeyev and
Maria Atamanova and
Max A. Alekseyev},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving,
and Aliquoting Problems},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {97--111},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_7},
doi = {10.1007/978-3-030-18174-1\_7},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AvdeyevAA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/DavotCGW19,
author = {Tom Davot and
Annie Chateau and
Rodolphe Giroudeau and
Mathias Weller},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {New Polynomial-Time Algorithm Around the Scaffolding Problem},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {25--38},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_2},
doi = {10.1007/978-3-030-18174-1\_2},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/DavotCGW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/GuerriniR19,
author = {Veronica Guerrini and
Giovanna Rosone},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Lightweight Metagenomic Classification via eBWT},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {112--124},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_8},
doi = {10.1007/978-3-030-18174-1\_8},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/GuerriniR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Kahramanogullari19,
author = {Ozan Kahramanogullari},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Enumerating Dominant Pathways in Biological Networks by Information
Flow Analysis},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {39--51},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_3},
doi = {10.1007/978-3-030-18174-1\_3},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Kahramanogullari19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LeSMZRW19,
author = {Thien Le and
Aaron Sy and
Erin K. Molloy and
Qiuyi (Richard) Zhang and
Satish Rao and
Tandy J. Warnow},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Using {INC} Within Divide-and-Conquer Phylogeny Estimation},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {167--178},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_12},
doi = {10.1007/978-3-030-18174-1\_12},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LeSMZRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Levy-JurgensonT19,
author = {Alona Levy{-}Jurgenson and
Xavier Tekpli and
Vessela N. Kristensen and
Zohar Yakhini},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Predicting Methylation from Sequence and Gene Expression Using Deep
Learning with Attention},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {179--190},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_13},
doi = {10.1007/978-3-030-18174-1\_13},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Levy-JurgensonT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MaharajOH19,
author = {Sridevi Maharaj and
Zarin Ohiba and
Wayne B. Hayes},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Comparing Different Graphlet Measures for Evaluating Network Model
Fits to BioGRID {PPI} Networks},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {52--67},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_4},
doi = {10.1007/978-3-030-18174-1\_4},
timestamp = {Wed, 26 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/MaharajOH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/NousiainenIL19,
author = {Kari Nousiainen and
Jukka Intosalmi and
Harri L{\"{a}}hdesm{\"{a}}ki},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {A Mathematical Model for Enhancer Activation Kinetics During Cell
Differentiation},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {191--202},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_14},
doi = {10.1007/978-3-030-18174-1\_14},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/NousiainenIL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/PetingiS19,
author = {Louis Petingi and
Tamar Schlick},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {68--79},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_5},
doi = {10.1007/978-3-030-18174-1\_5},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/PetingiS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/RahmanP19,
author = {Atif Rahman and
Lior Pachter},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Transcript Abundance Estimation and the Laminar Packing Problem},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {203--211},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_15},
doi = {10.1007/978-3-030-18174-1\_15},
timestamp = {Thu, 26 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/RahmanP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ShlemovK19,
author = {Alexander Shlemov and
Anton I. Korobeynikov},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {PathRacer: Racing Profile {HMM} Paths on Assembly Graph},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {80--94},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_6},
doi = {10.1007/978-3-030-18174-1\_6},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/ShlemovK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Warnow19,
author = {Tandy J. Warnow},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {3--21},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_1},
doi = {10.1007/978-3-030-18174-1\_1},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Warnow19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WrightK019,
author = {Christopher Wright and
Sriram Krishnamoorthy and
Milind Kulkarni},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {{MULKSG:} MULtiple {K} Simultaneous Graph Assembly},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {125--136},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_9},
doi = {10.1007/978-3-030-18174-1\_9},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WrightK019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/XiaoCR19,
author = {Peng Xiao and
Xingyu Cai and
Sanguthevar Rajasekaran},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Efficient Algorithms for Finding Edit-Distance Based Motifs},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {212--223},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_16},
doi = {10.1007/978-3-030-18174-1\_16},
timestamp = {Wed, 04 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/XiaoCR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ZanettiCM19,
author = {Jo{\~{a}}o Paulo Pereira Zanetti and
Leonid Chindelevitch and
Jo{\~{a}}o Meidanis},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {137--151},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_10},
doi = {10.1007/978-3-030-18174-1\_10},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ZanettiCM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ZanettiCM19a,
author = {Jo{\~{a}}o Paulo Pereira Zanetti and
Leonid Chindelevitch and
Jo{\~{a}}o Meidanis},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Generalizations of the Genomic Rank Distance to Indels},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {152--164},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_11},
doi = {10.1007/978-3-030-18174-1\_11},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ZanettiCM19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2019,
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1},
doi = {10.1007/978-3-030-18174-1},
isbn = {978-3-030-18173-4},
timestamp = {Tue, 09 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Akutsu18,
author = {Tatsuya Akutsu},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Analysis and Control of Boolean Networks},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {3--7},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_1},
doi = {10.1007/978-3-319-91938-6\_1},
timestamp = {Tue, 17 May 2022 11:54:28 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Akutsu18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AlexandrinoLD18,
author = {Alexsandro Oliveira Alexandrino and
Carla Negri Lintzmayer and
Zanoni Dias},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted
Operations},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {53--64},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_5},
doi = {10.1007/978-3-319-91938-6\_5},
timestamp = {Tue, 10 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AlexandrinoLD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BritoODD18,
author = {Klairton Lima Brito and
Andre Rodrigues Oliveira and
Ulisses Dias and
Zanoni Dias},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Heuristics for the Sorting Signed Permutations by Reversals and Transpositions
Problem},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {65--75},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_6},
doi = {10.1007/978-3-319-91938-6\_6},
timestamp = {Tue, 10 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BritoODD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ChengDPQWLW18,
author = {Ricson Cheng and
Matthew Dohlen and
Chen Pekker and
Gabriel Quiroz and
Jincheng Wang and
Ran Libeskind{-}Hadas and
Yi{-}Chieh Wu},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Reconciliation Feasibility of Non-binary Gene Trees Under a Duplication-Loss-Coalescence
Model},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {11--23},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_2},
doi = {10.1007/978-3-319-91938-6\_2},
timestamp = {Thu, 21 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ChengDPQWLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Czeizler0P18,
author = {Eugen Czeizler and
Alexandru Popa and
Victor Popescu},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Fixed Parameter Algorithms and Hardness of Approximation Results for
the Structural Target Controllability Problem},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {103--114},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_9},
doi = {10.1007/978-3-319-91938-6\_9},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Czeizler0P18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Gunawan18,
author = {Andreas D. M. Gunawan},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Solving the Tree Containment Problem for Reticulation-Visible Networks
in Linear Time},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {24--36},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_3},
doi = {10.1007/978-3-319-91938-6\_3},
timestamp = {Thu, 21 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Gunawan18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/IerselJJMZ18,
author = {Leo van Iersel and
Remie Janssen and
Mark Jones and
Yukihiro Murakami and
Norbert Zeh},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Polynomial-Time Algorithms for Phylogenetic Inference Problems},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {37--49},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_4},
doi = {10.1007/978-3-319-91938-6\_4},
timestamp = {Thu, 05 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/IerselJJMZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MirandaLD18,
author = {Guilherme Henrique Santos Miranda and
Carla Negri Lintzmayer and
Zanoni Dias},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Sorting Permutations by Limited-Size Operations},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {76--87},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_7},
doi = {10.1007/978-3-319-91938-6\_7},
timestamp = {Tue, 10 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MirandaLD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Mou18,
author = {Chenqi Mou},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Symbolic Detection of Steady States of Autonomous Differential Biological
Systems by Transformation into Block Triangular Form},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {115--127},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_10},
doi = {10.1007/978-3-319-91938-6\_10},
timestamp = {Tue, 10 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Mou18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Silvestre-RyanH18,
author = {Jordi Silvestre{-}Ryan and
Ian H. Holmes},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Consensus Decoding of Recurrent Neural Network Basecallers},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {128--139},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_11},
doi = {10.1007/978-3-319-91938-6\_11},
timestamp = {Tue, 09 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/Silvestre-RyanH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/TsarevSS18,
author = {Sergey P. Tsarev and
Maria Y. Senashova and
Michael G. Sadovsky},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Fast Algorithm for Vernier Search of Long Repeats in {DNA} Sequences
with Bounded Error Density},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {88--99},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_8},
doi = {10.1007/978-3-319-91938-6\_8},
timestamp = {Tue, 10 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/TsarevSS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WijayaLAHTN18,
author = {Ezra B. Wijaya and
Erwandy Lim and
David Agustriawan and
Chien{-}Hung Huang and
Jeffrey J. P. Tsai and
Ka{-}Lok Ng},
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Utilize Imputation Method and Meta-analysis to Identify DNA-Methylation-Mediated
microRNAs in Ovarian Cancer},
booktitle = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
pages = {140--153},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6\_12},
doi = {10.1007/978-3-319-91938-6\_12},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WijayaLAHTN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2018,
editor = {Jesper Jansson and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology - 5th International Conference,
AlCoB 2018, Hong Kong, China, June 25-26, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10849},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-91938-6},
doi = {10.1007/978-3-319-91938-6},
isbn = {978-3-319-91937-9},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/0001BDPR17,
author = {Stefano Beretta and
Paola Bonizzoni and
Luca Denti and
Marco Previtali and
Raffaella Rizzi},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern
Matching to a Hypertext},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {49--61},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_3},
doi = {10.1007/978-3-319-58163-7\_3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/0001BDPR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Biehl17,
author = {Michael Biehl},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Biomedical Applications of Prototype Based Classifiers and Relevance
Learning},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {3--23},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_1},
doi = {10.1007/978-3-319-58163-7\_1},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Biehl17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ConteGMTV17,
author = {Alessio Conte and
Roberto Grossi and
Andrea Marino and
Lorenzo Tattini and
Luca Versari},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {A Fast Algorithm for Large Common Connected Induced Subgraphs},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {62--74},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_4},
doi = {10.1007/978-3-319-58163-7\_4},
timestamp = {Sun, 18 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ConteGMTV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/GerrishH17,
author = {Philip J. Gerrish and
Nick Hengartner},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Inferring the Distribution of Fitness Effects {(DFE)} of Newly-Arising
Mutations Using Samples Taken from Evolving Populations in Real Time},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {103--114},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_7},
doi = {10.1007/978-3-319-58163-7\_7},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/GerrishH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/IslamM17,
author = {T. M. Rezwanul Islam and
Ian McQuillan},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {{CSA-X:} Modularized Constrained Multiple Sequence Alignment},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {143--154},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_10},
doi = {10.1007/978-3-319-58163-7\_10},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/IslamM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/IsomurodovLS17,
author = {Javlon E. Isomurodov and
Alexander A. Loboda and
Alexey A. Sergushichev},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Ranking Vertices for Active Module Recovery Problem},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {75--84},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_5},
doi = {10.1007/978-3-319-58163-7\_5},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/IsomurodovLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/JanssonRS17,
author = {Jesper Jansson and
Ramesh Rajaby and
Wing{-}Kin Sung},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {An Efficient Algorithm for the Rooted Triplet Distance Between Galled
Trees},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {115--126},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_8},
doi = {10.1007/978-3-319-58163-7\_8},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/JanssonRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Kahramanogullari17,
author = {Ozan Kahramanogullari},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Quantifying Information Flow in Chemical Reaction Networks},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {155--166},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_11},
doi = {10.1007/978-3-319-58163-7\_11},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Kahramanogullari17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/OzdemirSBCHSWL17,
author = {Alex Ozdemir and
Michael Sheely and
Daniel Bork and
Ricson Cheng and
Reyna Hulett and
Jean Sung and
Jincheng Wang and
Ran Libeskind{-}Hadas},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss
Model},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {127--139},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_9},
doi = {10.1007/978-3-319-58163-7\_9},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/OzdemirSBCHSWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Pfaltz17,
author = {John L. Pfaltz},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Computational Processes that Appear to Model Human Memory},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {85--99},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_6},
doi = {10.1007/978-3-319-58163-7\_6},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Pfaltz17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/RosenEP17,
author = {Yohei Rosen and
Jordan Eizenga and
Benedict Paten},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Describing the Local Structure of Sequence Graphs},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {24--46},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_2},
doi = {10.1007/978-3-319-58163-7\_2},
timestamp = {Wed, 26 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/RosenEP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SilvaSTM17,
author = {Gabriel H. G. Silva and
Edans F. de O. Sandes and
George Teodoro and
Alba C. M. A. Melo},
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Parallel Biological Sequence Comparison in Linear Space with Multiple
Adjustable Bands},
booktitle = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
pages = {167--179},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7\_12},
doi = {10.1007/978-3-319-58163-7\_12},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/SilvaSTM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2017,
editor = {Daniel Figueiredo and
Carlos Mart{\'{\i}}n{-}Vide and
Diogo Pratas and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology - 4th International Conference,
AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10252},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-58163-7},
doi = {10.1007/978-3-319-58163-7},
isbn = {978-3-319-58162-0},
timestamp = {Fri, 14 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/BhattacharyyaM16,
author = {Sourya Bhattacharyya and
Jayanta Mukhopadhyay},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Accumulated Coalescence Rank and Excess Gene Count for Species Tree
Inference},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {93--105},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_8},
doi = {10.1007/978-3-319-38827-4\_8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/BhattacharyyaM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ChauveCP16,
author = {C{\'{e}}dric Chauve and
Julien Courtiel and
Yann Ponty},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Counting, Generating and Sampling Tree Alignments},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {53--64},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_5},
doi = {10.1007/978-3-319-38827-4\_5},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/ChauveCP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/CominLRV16,
author = {Carlo Comin and
Anthony Labarre and
Romeo Rizzi and
St{\'{e}}phane Vialette},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Sorting with Forbidden Intermediates},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {133--144},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_11},
doi = {10.1007/978-3-319-38827-4\_11},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/CominLRV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Faro16,
author = {Simone Faro},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Evaluation and Improvement of Fast Algorithms for Exact Matching on
Genome Sequences},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {145--157},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_12},
doi = {10.1007/978-3-319-38827-4\_12},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Faro16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Figueiredo16,
author = {Daniel Figueiredo},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Relating Bisimulations with Attractors in Boolean Network Models},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {17--25},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_2},
doi = {10.1007/978-3-319-38827-4\_2},
timestamp = {Fri, 14 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Figueiredo16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KmetK16,
author = {Tibor Kmet and
Maria Kmetova},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Neural Networks Simulation of Feeding Adaptations of Daphnia},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {26--37},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_3},
doi = {10.1007/978-3-319-38827-4\_3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/KmetK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Lopez-CamachoGG16,
author = {Esteban L{\'{o}}pez{-}Camacho and
Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and
Jos{\'{e}} Garc{\'{\i}}a{-}Nieto and
Antonio J. Nebro and
Jos{\'{e}} Francisco Aldana Montes},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {A New Multi-objective Approach for Molecular Docking Based on {RMSD}
and Binding Energy},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {65--77},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_6},
doi = {10.1007/978-3-319-38827-4\_6},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/Lopez-CamachoGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MneimnehA16,
author = {Saad Mneimneh and
Syed Ali Ahmed},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Gibbs/MCMC Sampling for Multiple {RNA} Interaction with Sub-optimal
Solutions},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {78--90},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_7},
doi = {10.1007/978-3-319-38827-4\_7},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MneimnehA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MykowieckaG16,
author = {Agnieszka Mykowiecka and
Pawel G{\'{o}}recki},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Bootstrapping Algorithms for Gene Duplication and Speciation Events},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {106--118},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_9},
doi = {10.1007/978-3-319-38827-4\_9},
timestamp = {Fri, 17 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MykowieckaG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/PanchalAP16,
author = {Charmi Panchal and
Sepinoud Azimi and
Ion Petre},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Generating the Logicome of a Biological Network},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {38--49},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_4},
doi = {10.1007/978-3-319-38827-4\_4},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/PanchalAP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/RautiainenSM16,
author = {Mikko Rautiainen and
Leena Salmela and
Veli M{\"{a}}kinen},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Identification of Variant Compositions in Related Strains Without
Reference},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {158--170},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_13},
doi = {10.1007/978-3-319-38827-4\_13},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/RautiainenSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SankoffZLT16,
author = {David Sankoff and
Chunfang Zheng and
Eric Lyons and
Haibao Tang},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {The Trees in the Peaks},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {3--14},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_1},
doi = {10.1007/978-3-319-38827-4\_1},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/SankoffZLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/TsarevS16,
author = {Sergey P. Tsarev and
Michael G. Sadovsky},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {New Error Tolerant Method for Search of Long Repeats in {DNA} Sequences},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {171--182},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_14},
doi = {10.1007/978-3-319-38827-4\_14},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/TsarevS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/UrbiniSMS16,
author = {Laura Urbini and
Blerina Sinaimeri and
Catherine Matias and
Marie{-}France Sagot},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Robustness of the Parsimonious Reconciliation Method in Cophylogeny},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {119--130},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_10},
doi = {10.1007/978-3-319-38827-4\_10},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/UrbiniSMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2016,
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4},
doi = {10.1007/978-3-319-38827-4},
isbn = {978-3-319-38826-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AlKindyGCSPB15,
author = {Bassam AlKindy and
Christophe Guyeux and
Jean{-}Fran{\c{c}}ois Couchot and
Michel Salomon and
Christian Parisod and
Jacques M. Bahi},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well
Supported Phylogenetic Trees Based on Subsets of Chloroplastic Core
Genes},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {83--96},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_7},
doi = {10.1007/978-3-319-21233-3\_7},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AlKindyGCSPB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AlexeevPA15,
author = {Nikita Alexeev and
Anna Pologova and
Max A. Alekseyev},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Generalized Hultman Numbers and the Distribution of Multi-break Distances},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {3--12},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_1},
doi = {10.1007/978-3-319-21233-3\_1},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AlexeevPA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ChaudharyFB15,
author = {Ruchi Chaudhary and
David Fern{\'{a}}ndez{-}Baca and
J. Gordon Burleigh},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Constructing and Employing Tree Alignment Graphs for Phylogenetic
Synthesis},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {97--108},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_8},
doi = {10.1007/978-3-319-21233-3\_8},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ChaudharyFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/JanssonR15,
author = {Jesper Jansson and
Ramesh Rajaby},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {A More Practical Algorithm for the Rooted Triplet Distance},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {109--125},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_9},
doi = {10.1007/978-3-319-21233-3\_9},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/JanssonR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/JiangA15,
author = {Shuai Jiang and
Max A. Alekseyev},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Implicit Transpositions in Shortest {DCJ} Scenarios},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {13--24},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_2},
doi = {10.1007/978-3-319-21233-3\_2},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/JiangA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KrivakH15,
author = {Radoslav Kriv{\'{a}}k and
David Hoksza},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {{P2RANK:} Knowledge-Based Ligand Binding Site Prediction Using Aggregated
Local Features},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {41--52},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_4},
doi = {10.1007/978-3-319-21233-3\_4},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/KrivakH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LadroueK15,
author = {Christophe Ladroue and
Sara Kalvala},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Constraint-Based Genetic Compilation},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {25--38},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_3},
doi = {10.1007/978-3-319-21233-3\_3},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LadroueK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/NguyenR15,
author = {Quan Nguyen and
Teemu Roos},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Likelihood-Based Inference of Phylogenetic Networks from Sequence
Data by PhyloDAG},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {126--140},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_10},
doi = {10.1007/978-3-319-21233-3\_10},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/NguyenR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SchillerJHS15,
author = {Benjamin Schiller and
Sven Jager and
Kay Hamacher and
Thorsten Strufe},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {StreaM - {A} Stream-Based Algorithm for Counting Motifs in Dynamic
Graphs},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {53--67},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_5},
doi = {10.1007/978-3-319-21233-3\_5},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/SchillerJHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SonderbySNW15,
author = {S{\o}ren Kaae S{\o}nderby and
Casper Kaae S{\o}nderby and
Henrik Nielsen and
Ole Winther},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Convolutional {LSTM} Networks for Subcellular Localization of Proteins},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {68--80},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_6},
doi = {10.1007/978-3-319-21233-3\_6},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/SonderbySNW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/UlyantsevM15,
author = {Vladimir Ulyantsev and
Mikhail Melnik},
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Constructing Parsimonious Hybridization Networks from Multiple Phylogenetic
Trees Using a SAT-Solver},
booktitle = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
pages = {141--153},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3\_11},
doi = {10.1007/978-3-319-21233-3\_11},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/UlyantsevM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2015,
editor = {Adrian{-}Horia Dediu and
Francisco Hern{\'{a}}ndez Quiroz and
Carlos Mart{\'{\i}}n{-}Vide and
David A. Rosenblueth},
title = {Algorithms for Computational Biology - Second International Conference,
AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9199},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21233-3},
doi = {10.1007/978-3-319-21233-3},
isbn = {978-3-319-21232-6},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/AlthausHH14,
author = {Ernst Althaus and
Andreas Hildebrandt and
Anna Katharina Hildebrandt},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {A Greedy Algorithm for Hierarchical Complete Linkage Clustering},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {25--34},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_2},
doi = {10.1007/978-3-319-07953-0\_2},
timestamp = {Mon, 16 Sep 2019 15:22:41 +0200},
biburl = {https://dblp.org/rec/conf/alcob/AlthausHH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ArrudaDD14,
author = {Thiago da Silva Arruda and
Ulisses Dias and
Zanoni Dias},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Heuristics for the Sorting by Length-Weighted Inversions Problem on
Signed Permutations},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {59--70},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_5},
doi = {10.1007/978-3-319-07953-0\_5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ArrudaDD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ChateauG14,
author = {Annie Chateau and
Rodolphe Giroudeau},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Complexity and Polynomial-Time Approximation Algorithms around the
Scaffolding Problem},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {47--58},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_4},
doi = {10.1007/978-3-319-07953-0\_4},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ChateauG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/GalperinK14,
author = {Michael Y. Galperin and
Eugene V. Koonin},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Comparative Genomics Approaches to Identifying Functionally Related
Genes},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {1--24},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_1},
doi = {10.1007/978-3-319-07953-0\_1},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/GalperinK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/GrigorievKL14,
author = {Alexander Grigoriev and
Steven Kelk and
Nela Lekic},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On Low Treewidth Graphs and Supertrees},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {71--82},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_6},
doi = {10.1007/978-3-319-07953-0\_6},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/GrigorievKL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/HedtkeLMG14,
author = {Ivo Hedtke and
Ioana M. Lemnian and
Matthias M{\"{u}}ller{-}Hannemann and
Ivo Grosse},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On Optimal Read Trimming in Next Generation Sequencing and Its Complexity},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {83--94},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_7},
doi = {10.1007/978-3-319-07953-0\_7},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/HedtkeLMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/IancuGAP14,
author = {Bogdan Iancu and
Diana{-}Elena Gratie and
Sepinoud Azimi and
Ion Petre},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On the Implementation of Quantitative Model Refinement},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {95--106},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_8},
doi = {10.1007/978-3-319-07953-0\_8},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/IancuGAP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KojimaNMYSKN14,
author = {Kaname Kojima and
Naoki Nariai and
Takahiro Mimori and
Yumi Yamaguchi{-}Kabata and
Yukuto Sato and
Yosuke Kawai and
Masao Nagasaki},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {HapMonster: {A} Statistically Unified Approach for Variant Calling
and Haplotyping Based on Phase-Informative Reads},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {107--118},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_9},
doi = {10.1007/978-3-319-07953-0\_9},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/KojimaNMYSKN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LemaitreCP14,
author = {Claire Lemaitre and
Liviu Ciortuz and
Pierre Peterlongo},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints
from Raw {NGS} Reads},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {119--130},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_10},
doi = {10.1007/978-3-319-07953-0\_10},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LemaitreCP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LemarchandELS14,
author = {Laurent Lemarchand and
Reinhardt Euler and
Congping Lin and
Imogen Sparkes},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Modeling the Geometry of the Endoplasmic Reticulum Network},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {131--145},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_11},
doi = {10.1007/978-3-319-07953-0\_11},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/LemarchandELS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LintzmayerD14,
author = {Carla Negri Lintzmayer and
Zanoni Dias},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On Sorting of Signed Permutations by Prefix and Suffix Reversals and
Transpositions},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {146--157},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_12},
doi = {10.1007/978-3-319-07953-0\_12},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LintzmayerD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LintzmayerD14a,
author = {Carla Negri Lintzmayer and
Zanoni Dias},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On the Diameter of Rearrangement Problems},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {158--170},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_13},
doi = {10.1007/978-3-319-07953-0\_13},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LintzmayerD14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MaxwellCK14,
author = {Sean Maxwell and
Mark R. Chance and
Mehmet Koyut{\"{u}}rk},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Efficiently Enumerating All Connected Induced Subgraphs of a Large
Molecular Network},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {171--182},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_14},
doi = {10.1007/978-3-319-07953-0\_14},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/MaxwellCK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/MorenoDFW14,
author = {Liana Amaya Moreno and
Ozlem Defterli and
Armin F{\"{u}}genschuh and
Gerhard{-}Wilhelm Weber},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Vester's Sensitivity Model for Genetic Networks with Time-Discrete
Dynamics},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {35--46},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_3},
doi = {10.1007/978-3-319-07953-0\_3},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/MorenoDFW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/NarzisiMS14,
author = {Giuseppe Narzisi and
Bud Mishra and
Michael C. Schatz},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On Algorithmic Complexity of Biomolecular Sequence Assembly Problem},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {183--195},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_15},
doi = {10.1007/978-3-319-07953-0\_15},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/NarzisiMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/NoorAWSNN14,
author = {Amina Noor and
Aitzaz Ahmad and
Bilal Wajid and
Erchin Serpedin and
Mohamed N. Nounou and
Hazem N. Nounou},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {A Closed-Form Solution for Transcription Factor Activity Estimation
Using Network Component Analysis},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {196--207},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_16},
doi = {10.1007/978-3-319-07953-0\_16},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/NoorAWSNN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/OhtsukiNKMSKYSN14,
author = {Tomohiko Ohtsuki and
Naoki Nariai and
Kaname Kojima and
Takahiro Mimori and
Yukuto Sato and
Yosuke Kawai and
Yumi Yamaguchi{-}Kabata and
Tetsuo Shibuya and
Masao Nagasaki},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {{SVEM:} {A} Structural Variant Estimation Method Using Multi-mapped
Reads on Breakpoints},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {208--219},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_17},
doi = {10.1007/978-3-319-07953-0\_17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/OhtsukiNKMSKYSN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/PolychronopoulosKNPAG14,
author = {Dimitris Polychronopoulos and
Anastasia Krithara and
Christoforos Nikolaou and
Georgios Paliouras and
Yannis Almirantis and
George Giannakopoulos},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Analysis and Classification of Constrained {DNA} Elements with N-gram
Graphs and Genomic Signatures},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {220--234},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_18},
doi = {10.1007/978-3-319-07953-0\_18},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/PolychronopoulosKNPAG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/RosenbluethMCA14,
author = {David A. Rosenblueth and
Stalin Mu{\~{n}}oz and
Miguel Carrillo and
Eugenio Azpeitia},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Inference of Boolean Networks from Gene Interaction Graphs Using a
{SAT} Solver},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {235--246},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_19},
doi = {10.1007/978-3-319-07953-0\_19},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alcob/RosenbluethMCA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WandeltL14,
author = {Sebastian Wandelt and
Ulf Leser},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {{RRCA:} Ultra-Fast Multiple In-species Genome Alignments},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {247--261},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_20},
doi = {10.1007/978-3-319-07953-0\_20},
timestamp = {Sun, 21 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WandeltL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WohlersBDKA14,
author = {Inken Wohlers and
Mathilde Le Boudic{-}Jamin and
Hristo N. Djidjev and
Gunnar W. Klau and
Rumen Andonov},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Exact Protein Structure Classification Using the Maximum Contact Map
Overlap Metric},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {262--273},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_21},
doi = {10.1007/978-3-319-07953-0\_21},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WohlersBDKA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alcob/2014,
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0},
doi = {10.1007/978-3-319-07953-0},
isbn = {978-3-319-07952-3},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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