- Nicola Harte, Ville Silventoinen, Emmanuel Quevillon, Stephen Robinson, Kimmo Kallio, Xavier Fustero, Pravin Patel, Petteri Jokinen, Rodrigo Lopez
:
Public web-based services from the European Bioinformatics Institute. Nucleic Acids Res. 32(Web-Server-Issue): 3-9 (2004) - Peter M. Haverty, Martin C. Frith
, Zhiping Weng:
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis. Nucleic Acids Res. 32(Web-Server-Issue): 213-216 (2004) - Matthias Heinig
, Dmitrij Frishman:
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 32(Web-Server-Issue): 500-502 (2004) - Wolfgang Helmberg, Raymond Dunivin, Michael Feolo:
The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences. Nucleic Acids Res. 32(Web-Server-Issue): 173-175 (2004) - Andreas Henschel, Frank Buchholz
, Bianca Habermann
:
DEQOR: a web-based tool for the design and quality control of siRNAs. Nucleic Acids Res. 32(Web-Server-Issue): 113-120 (2004) - Henning Hermjakob
, Luisa Montecchi-Palazzi, Chris Lewington
, Sugath Mudali, Samuel Kerrien
, Sandra E. Orchard
, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch
, Gianni Cesareni, David James Sherman, Rolf Apweiler
:
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32(Database-Issue): 452-455 (2004) - Antonio Hermoso
, Daniel Aguilar, Francesc X. Avilés, Enrique Querol:
TrSDB: a proteome database of transcription factors. Nucleic Acids Res. 32(Database-Issue): 171-173 (2004) - Javier Herrero
, Juan M. Vaquerizas
, Fátima Al-Shahrour, Lucía Conde
, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte
, Joaquín Dopazo
:
New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Res. 32(Web-Server-Issue): 485-491 (2004) - Christiane Hertz-Fowler
, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou
, Paul Mooney, Adrian Tivey, Matthew Berriman
, Neil Hall, Kim Rutherford
, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell:
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32(Database-Issue): 339-343 (2004) - David P. Hill, Dale A. Begley, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Constance M. Smith
, Jon S. Beal, Lori E. Corbani, Judith A. Blake
, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): updates and enhancements. Nucleic Acids Res. 32(Database-Issue): 568-571 (2004) - Karsten Hiller
, Andreas Grote, Maurice Scheer, Richard Münch, Dieter Jahn
:
PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res. 32(Web-Server-Issue): 375-379 (2004) - Michael M. Hoffman
, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington:
AANT: the Amino Aciduchleotide Interaction Database. Nucleic Acids Res. 32(Database-Issue): 174-181 (2004) - Karsten Hokamp
, Fiona M. Roche, Michael Acab, Marc-Etienne Rousseau
, Byron Kuo, David L. Goode
, Dana Aeschliman, Jenny Bryan
, Lorne A. Babiuk, Robert E. W. Hancock, Fiona S. L. Brinkman
:
ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res. 32(Web-Server-Issue): 457-459 (2004) - Karsten Hokamp
, Kenneth H. Wolfe
:
PubCrawler: keeping up comfortably with PubMed and GenBank. Nucleic Acids Res. 32(Web-Server-Issue): 16-19 (2004) - Thierry Hotelier, Ludovic Renault
, Xavier Cousin
, Vincent Nègre, Pascale Marchot
, Arnaud Chatonnet
:
ESTHER, the database of the /?hydrolase fold superfamily of proteins. Nucleic Acids Res. 32(Database-Issue): 145-147 (2004) - Zhenjun Hu, Yutao Fu, Anason S. Halees
, Szymon M. Kielbasa
, Zhiping Weng:
SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation. Nucleic Acids Res. 32(Web-Server-Issue): 235-241 (2004) - Nicolas Hulo, Christian J. A. Sigrist
, Virginie Le Saux, Petra S. Langendijk-Genevaux
, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro
, Philipp Bucher, Amos Bairoch
:
Recent improvements to the PROSITE database. Nucleic Acids Res. 32(Database-Issue): 134-137 (2004) - Tien Huynh, Isidore Rigoutsos
:
The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update. Nucleic Acids Res. 32(Web-Server-Issue): 10-15 (2004) - Vladimir A. Ivanisenko
, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
:
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 32(Web-Server-Issue): 549-554 (2004) - Lars Juhl Jensen
, Julien Lagarde
, Christian von Mering
, Peer Bork
:
ArrayProspector: a web resource of functional associations inferred from microarray expression data. Nucleic Acids Res. 32(Web-Server-Issue): 445-448 (2004) - Quentin Kaas
, Manuel Ruiz, Marie-Paule Lefranc:
IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data. Nucleic Acids Res. 32(Database-Issue): 208-210 (2004) - Olga V. Kalinina
, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand
, Aleksandra B. Rakhmaninova:
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32(Web-Server-Issue): 424-428 (2004) - Minoru Kanehisa, Susumu Goto, Shuichi Kawashima
, Yasushi Okuno, Masahiro Hattori:
The KEGG resource for deciphering the genome. Nucleic Acids Res. 32(Database-Issue): 277-280 (2004) - Matti Kankainen
, Liisa Holm
:
POBO, transcription factor binding site verification with bootstrapping. Nucleic Acids Res. 32(Web-Server-Issue): 222-229 (2004) - Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane
, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente
, Ugis Sarkans, Jaak Vilo
, Alvis Brazma:
Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res. 32(Web-Server-Issue): 465-470 (2004) - Suresh Karanam, Carlos Sanchez Moreno:
CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets. Nucleic Acids Res. 32(Web-Server-Issue): 475-484 (2004) - Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent:
The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 32(Database-Issue): 493-496 (2004) - Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell
, Trey Ideker
:
PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Res. 32(Web-Server-Issue): 83-88 (2004) - Reed J. Kelso, Michael Buszczak, Ana T. Quiñones, Claudia Castiblanco, Stacy Mazzalupo, Lynn Cooley:
Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster. Nucleic Acids Res. 32(Database-Issue): 418-420 (2004) - Purvesh Khatri
, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici
:
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res. 32(Web-Server-Issue): 449-456 (2004)