- Carol J. Bult, Judith A. Blake
, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): integrating biology with the genome. Nucleic Acids Res. 32(Database-Issue): 476-481 (2004) - Evelyn Camon, Michele Magrane
, Daniel Barrell
, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez
, Rolf Apweiler
:
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res. 32(Database-Issue): 262-266 (2004) - Zhi Wei Cao, Ying Xue
, Lianyi Han, B. Xie, H. Zhou, C. J. Zheng, Honghuang Lin
, Yuzong Chen
:
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. Nucleic Acids Res. 32(Web-Server-Issue): 679-685 (2004) - Sònia Casillas
, Antonio Barbadilla
:
PDA: a pipeline to explore and estimate polymorphism in large DNA databases. Nucleic Acids Res. 32(Web-Server-Issue): 166-169 (2004) - Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo
, Sabino Liuni, Flavio Mignone, Graziano Pesole
:
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32(Web-Server-Issue): 624-627 (2004) - John-Marc Chandonia
, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl
, Michael Levitt, Steven E. Brenner:
The ASTRAL Compendium in 2004. Nucleic Acids Res. 32(Database-Issue): 189-192 (2004) - Darby Tien-Hao Chang, Chien-Yu Chen
, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004) - Roy R. Chaudhuri
, Arshad M. Khan
, Mark J. Pallen:
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Res. 32(Database-Issue): 296-299 (2004) - Ming Chen
, Susana Lin, Ralf Hofestädt:
STCDB: Signal Transduction Classification Database. Nucleic Acids Res. 32(Database-Issue): 456-458 (2004) - Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman
:
The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface. Nucleic Acids Res. 32(Database-Issue): 578-581 (2004) - Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams
:
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res. 32(Web-Server-Issue): 441-444 (2004) - Karen R. Christie
, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski
, Selina S. Dwight, Stacia R. Engel
, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver
, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry
:
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 32(Database-Issue): 311-314 (2004) - Giridhar Chukkapalli, Chittibabu Guda, Shankar Subramaniam:
SledgeHMMER: a web server for batch searching the Pfam database. Nucleic Acids Res. 32(Web-Server-Issue): 542-544 (2004) - Hee-Joon Chung, Mingoo Kim, Chan Hee Park, Jihoon Kim, Ju Han Kim:
ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics. Nucleic Acids Res. 32(Web-Server-Issue): 460-464 (2004) - Jean-Baptiste Claude
, Karsten Suhre
, Cédric Notredame
, Jean-Michel Claverie
, Chantal Abergel
:
CaspR: a web server for automated molecular replacement using homology modelling. Nucleic Acids Res. 32(Web-Server-Issue): 606-609 (2004) - Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho:
ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Res. 32(Web-Server-Issue): 96-99 (2004) - Lucía Conde
, Juan M. Vaquerizas
, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente
, Mercedes Robledo
, Joaquín Dopazo
:
PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res. 32(Web-Server-Issue): 242-248 (2004) - Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32(Database-Issue): 258-261 (2004)
- Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam:
MitoProteome: mitochondrial protein sequence database and annotation system. Nucleic Acids Res. 32(Database-Issue): 463-467 (2004) - David J. Craigon, Nick James, John Okyere, Janet Higgins, Joan Jotham, Sean T. May
:
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32(Database-Issue): 575-577 (2004) - Tal Dagan
, Rotem Sorek, Eilon Sharon, Gil Ast, Dan Graur:
AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Res. 32(Database-Issue): 489-492 (2004) - Ian W. Davis, Laura Weston Murray, Jane S. Richardson, David C. Richardson:
MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32(Web-Server-Issue): 615-619 (2004) - Alexander V. Diemand, Holger Scheib:
iMolTalk: an interactive, internet-based protein structure analysis server. Nucleic Acids Res. 32(Web-Server-Issue): 512-516 (2004) - Ye Ding, Chi Yu Chan, Charles E. Lawrence:
Sfold web server for statistical folding and rational design of nucleic acids. Nucleic Acids Res. 32(Web-Server-Issue): 135-141 (2004) - Petr Divina, Jirí Forejt
:
The Mouse SAGE Site: database of public mouse SAGE libraries. Nucleic Acids Res. 32(Database-Issue): 482-483 (2004) - Todd J. Dolinsky, Jens Erik Nielsen
, James Andrew McCammon
, Nathan A. Baker
:
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 32(Web-Server-Issue): 665-667 (2004) - Qunfeng Dong, Shannon D. Schlueter, Volker Brendel:
PlantGDB, plant genome database and analysis tools. Nucleic Acids Res. 32(Database-Issue): 354-359 (2004) - Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart
:
PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res. 32(Web-Server-Issue): 660-664 (2004) - Peter Dudek, Didier Picard:
TROD: T7 RNAi Oligo Designer. Nucleic Acids Res. 32(Web-Server-Issue): 121-123 (2004) - François Enault, Karsten Suhre
, Olivier Poirot
, Chantal Abergel
, Jean-Michel Claverie
:
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis. Nucleic Acids Res. 32(Web-Server-Issue): 336-339 (2004)