- Carol J. Bult, Judith A. Blake, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): integrating biology with the genome. Nucleic Acids Res. 32(Database-Issue): 476-481 (2004) - Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler:
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res. 32(Database-Issue): 262-266 (2004) - Zhi Wei Cao, Ying Xue, Lianyi Han, B. Xie, H. Zhou, C. J. Zheng, Honghuang Lin, Yu Zong Chen:
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. Nucleic Acids Res. 32(Web-Server-Issue): 679-685 (2004) - Sònia Casillas, Antonio Barbadilla:
PDA: a pipeline to explore and estimate polymorphism in large DNA databases. Nucleic Acids Res. 32(Web-Server-Issue): 166-169 (2004) - Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole:
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32(Web-Server-Issue): 624-627 (2004) - John-Marc Chandonia, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner:
The ASTRAL Compendium in 2004. Nucleic Acids Res. 32(Database-Issue): 189-192 (2004) - Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004) - Roy R. Chaudhuri, Arshad M. Khan, Mark J. Pallen:
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Res. 32(Database-Issue): 296-299 (2004) - Ming Chen, Susana Lin, Ralf Hofestädt:
STCDB: Signal Transduction Classification Database. Nucleic Acids Res. 32(Database-Issue): 456-458 (2004) - Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman:
The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface. Nucleic Acids Res. 32(Database-Issue): 578-581 (2004) - Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams:
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res. 32(Web-Server-Issue): 441-444 (2004) - Karen R. Christie, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry:
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 32(Database-Issue): 311-314 (2004) - Giridhar Chukkapalli, Chittibabu Guda, Shankar Subramaniam:
SledgeHMMER: a web server for batch searching the Pfam database. Nucleic Acids Res. 32(Web-Server-Issue): 542-544 (2004) - Hee-Joon Chung, Mingoo Kim, Chan Hee Park, Jihoon Kim, Ju Han Kim:
ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics. Nucleic Acids Res. 32(Web-Server-Issue): 460-464 (2004) - Jean-Baptiste Claude, Karsten Suhre, Cédric Notredame, Jean-Michel Claverie, Chantal Abergel:
CaspR: a web server for automated molecular replacement using homology modelling. Nucleic Acids Res. 32(Web-Server-Issue): 606-609 (2004) - Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho:
ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Res. 32(Web-Server-Issue): 96-99 (2004) - Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo:
PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res. 32(Web-Server-Issue): 242-248 (2004) - Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32(Database-Issue): 258-261 (2004)
- Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam:
MitoProteome: mitochondrial protein sequence database and annotation system. Nucleic Acids Res. 32(Database-Issue): 463-467 (2004) - David J. Craigon, Nick James, John Okyere, Janet Higgins, Joan Jotham, Sean T. May:
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32(Database-Issue): 575-577 (2004) - Tal Dagan, Rotem Sorek, Eilon Sharon, Gil Ast, Dan Graur:
AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Res. 32(Database-Issue): 489-492 (2004) - Ian W. Davis, Laura Weston Murray, Jane S. Richardson, David C. Richardson:
MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32(Web-Server-Issue): 615-619 (2004) - Alexander V. Diemand, Holger Scheib:
iMolTalk: an interactive, internet-based protein structure analysis server. Nucleic Acids Res. 32(Web-Server-Issue): 512-516 (2004) - Ye Ding, Chi Yu Chan, Charles E. Lawrence:
Sfold web server for statistical folding and rational design of nucleic acids. Nucleic Acids Res. 32(Web-Server-Issue): 135-141 (2004) - Petr Divina, Jirí Forejt:
The Mouse SAGE Site: database of public mouse SAGE libraries. Nucleic Acids Res. 32(Database-Issue): 482-483 (2004) - Todd J. Dolinsky, Jens Erik Nielsen, James Andrew McCammon, Nathan A. Baker:
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 32(Web-Server-Issue): 665-667 (2004) - Qunfeng Dong, Shannon D. Schlueter, Volker Brendel:
PlantGDB, plant genome database and analysis tools. Nucleic Acids Res. 32(Database-Issue): 354-359 (2004) - Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart:
PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res. 32(Web-Server-Issue): 660-664 (2004) - Peter Dudek, Didier Picard:
TROD: T7 RNAi Oligo Designer. Nucleic Acids Res. 32(Web-Server-Issue): 121-123 (2004) - François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie:
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis. Nucleic Acids Res. 32(Web-Server-Issue): 336-339 (2004)