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2020 – today
- 2023
[j19]Yueh-Hua Tu, Hsueh-Fen Juan
, Hsuan-Cheng Huang:
Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts. Briefings Bioinform. 24(2) (2023)- [j18]Kai-Pu Chen, Chia-Lang Hsu, Yen-Jen Oyang, Hsuan-Cheng Huang, Hsueh-Fen Juan:
BIC: a database for the transcriptional landscape of bacteria in cancer. Nucleic Acids Res. 51(D1): 1205-1211 (2023) - 2022
- [j17]Kuei-Yueh Ko, Cho-Yi Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis. Bioinform. 38(3): 763-769 (2022) - 2021
- [j16]Ting-Fu Chen, Yu-Chuan Chang, Yi Hsiao, Ko-Han Lee, Yu-Chun Hsiao, Yu-Hsiang Lin, Yi-Chin Ethan Tu, Hsuan-Cheng Huang, Chien-Yu Chen, Hsueh-Fen Juan:
DockCoV2: a drug database against SARS-CoV-2. Nucleic Acids Res. 49(Database-Issue): D1152-D1159 (2021) - 2020
- [c3]Chia-Ying Wu, Arthur Chun-Chieh Shih, Hsuan-Cheng Huang, Chun-Ping Yu, Chien-Chang Chen:
Refined Prediction of Mouse and Human Actions Based on A Data-Selective Multiple-Stage Approach of 3D Convolutional Neural Networks. TAAI 2020: 242-247
2010 – 2019
- 2019
- [j15]Yun-Ru Chen, Hsuan-Cheng Huang, Chen-Ching Lin:
Regulatory feedback loops bridge the human gene regulatory network and regulate carcinogenesis. Briefings Bioinform. 20(3): 976-984 (2019) - 2017
- [j14]Chia-Lang Hsu, Jiankai Wang, Pei-Chun Lu, Hsuan-Cheng Huang, Hsueh-Fen Juan:
DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics. Bioinform. 33(22): 3664-3666 (2017) - 2015
- [j13]Li-Ling Lin, Hsuan-Cheng Huang, Hsueh-Fen Juan:
Circadian systems biology in Metazoa. Briefings Bioinform. 16(6): 1008-1024 (2015) - 2014
- [j12]Ken-Chi Yang, Chia-Lang Hsu, Chen-Ching Lin, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Mirin: identifying microRNA regulatory modules in protein-protein interaction networks. Bioinform. 30(17): 2527-2528 (2014) - 2013
- [j11]Szu-Chin Fu, Hsuan-Cheng Huang, Paul Horton, Hsueh-Fen Juan:
ValidNESs: a database of validated leucine-rich nuclear export signals. Nucleic Acids Res. 41(Database-Issue): 338-343 (2013) - 2012
- [j10]Cho-Yi Chen, Shui-Tein Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Lengthening of 3′UTR increases with morphological complexity in animal evolution. Bioinform. 28(24): 3178-3181 (2012) - [j9]Chen-Ching Lin, Ya-Jen Chen, Cho-Yi Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Crosstalk between transcription factors and microRNAs in human protein interaction network. BMC Syst. Biol. 6: 18 (2012) - 2011
- [j8]Cho-Yi Chen, Shui-Tein Chen, Chiou-Shann Fuh, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. BMC Bioinform. 12(S-1): S41 (2011) - [j7]Chien-Wei Tseng, Chen-Ching Lin, Chiung-Nien Chen, Hsuan-Cheng Huang, Hsueh-Fen Juan:
Integrative network analysis reveals active microRNAs and their functions in gastric cancer. BMC Syst. Biol. 5: 99 (2011) - [c2]Yu-Cheng Liu, Po-I Chiu, Hsuan-Cheng Huang, Vincent S. Tseng:
Prediction of Essential Genes by Mining Gene Ontology Semantics. ISBRA 2011: 49-60 - 2010
- [j6]Timothy H. Wu, Ian Chang, Lichieh Julie Chu, Hsuan-Cheng Huang, Wailap V. Ng:
Modularity of Escherichia coli sRNA regulation revealed by sRNA-target and protein network analysis. BMC Bioinform. 11(S-7): S11 (2010) - [j5]Chen-Ching Lin, Jen-Tsung Hsiang, Chia-Yi Wu, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy. BMC Syst. Biol. 4: 138 (2010)
2000 – 2009
- 2008
- [j4]Yu-Ching Fang, Hsuan-Cheng Huang, Hsueh-Fen Juan:
MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinform. 9 (2008) - 2006
- [j3]Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang:
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. J. Comput. Chem. 27(9): 1020-1032 (2006) - 2004
- [j2]Chia-Chin Wu, Hsuan-Cheng Huang, Hsueh-Fen Juan, Shui-Tein Chen:
GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data. Bioinform. 20(18): 3691-3693 (2004) - [j1]Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004) - [c1]Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. BIBE 2004: 427-433
Coauthor Index
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