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Arnab Bhattacharya , Sasha Levy , Adria LeBoeuf , Michelle Gaylord , Leslie Wilson , Ambuj K. Singh , Stuart C. Feinstein : A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics. BMC Bioinform. 9 (2008 )share record
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Harald Binder , Martin Schumacher : Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models. BMC Bioinform. 9 (2008 )export record
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Shameek Biswas , John D. Storey , Joshua M. Akey : Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis. BMC Bioinform. 9 (2008 )export record
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Danny A. Bitton , Michal J. Okoniewski , Yvonne Connolly , Crispin J. Miller : Exon level integration of proteomics and microarray data. BMC Bioinform. 9 (2008 )export record
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Marta Blangiardo , Sylvia Richardson : A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips. BMC Bioinform. 9 (2008 )export record
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Kevin Bleakley , Marie-Paule Lefranc , Gérard Biau : Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools. BMC Bioinform. 9 (2008 )export record
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Evert-Jan Blom , Sacha A. F. T. van Hijum , Klaas J. Hofstede , Remko Silvis , Jos B. T. M. Roerdink , Oscar P. Kuipers : DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinform. 9 (2008 )export record
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Jasmina Bogojeska , Thomas Lengauer , Jörg Rahnenführer : Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. 9 (2008 )export record
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Uta Bohnebeck , Thierry Lombardot , Renzo Kottmann , Frank Oliver Glöckner : MetaMine - A tool to detect and analyse gene patterns in their environmental context. BMC Bioinform. 9 (2008 )export record
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Andrew J. Bordner , Andrey A. Gorin : Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. BMC Bioinform. 9 (2008 )export record
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Ivan Borozan , Limin Chen , Bryan Paeper , Jenny E. Heathcote , Aled M. Edwards , Michael A. Katze , Zhaolei Zhang , Ian D. McGilvray : MAID : An effect size based model for microarray data integration across laboratories and platforms. BMC Bioinform. 9 (2008 )export record
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Salim Bougouffa , Jim Warwicker : Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces. BMC Bioinform. 9 (2008 )export record
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John Boyle , Christopher C. Cavnor , Sarah A. Killcoyne , Ilya Shmulevich : Systems biology driven software design for the research enterprise. BMC Bioinform. 9 (2008 )export record
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journals/bmcbi/BraistedKVMRWHFSFPP08 share record
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John C. Braisted , Srilatha Kuntumalla , Christine Vogel , Edward M. Marcotte , Alan R. Rodrigues , Rong Wang , Shih-Ting Huang , Erik S. Ferlanti , Alexander I. Saeed , Robert D. Fleischmann , Scott N. Peterson , Rembert Pieper : The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinform. 9 (2008 )share record
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Rosemary Braun , Leslie Cope , Giovanni Parmigiani : Identifying differential correlation in gene/pathway combinations. BMC Bioinform. 9 (2008 )export record
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Alfredo Braunstein , Roberto Mulet , Andrea Pagnani : Estimating the size of the solution space of metabolic networks. BMC Bioinform. 9 (2008 )export record
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Laurent Bréhélin , Jean-François Dufayard , Olivier Gascuel : PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. BMC Bioinform. 9 (2008 )share record
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Kevin Brick , Elisabetta Pizzi : A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins. BMC Bioinform. 9 (2008 )export record
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Matteo Brilli , Alessio Mengoni , Marco Fondi , Marco Bazzicalupo , Pietro Liò , Renato Fani : Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network. BMC Bioinform. 9 (2008 )export record
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Guy N. Brock , John R. Shaffer , Richard E. Blakesley , Meredith J. Lotz , George C. Tseng : Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes. BMC Bioinform. 9 (2008 )export record
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Brian L. Browning : PRESTO: Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies. BMC Bioinform. 9 (2008 )export record
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journals/bmcbi/BrusniakBCCEGLLMSVZAW08 share record
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Mi-Youn K. Brusniak , Bernd Bodenmiller , David S. Campbell , Kelly Cooke , James Eddes , Andrew Garbutt , Hollis Lau , Simon Letarte , Lukas N. Mueller , Vagisha Sharma , Olga Vitek , Ning Zhang , Ruedi Aebersold , Julian D. Watts : Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. BMC Bioinform. 9 (2008 )share record
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Kenneth Bryan , Lorraine Brennan , Padraig Cunningham : MetaFIND: A feature analysis tool for metabolomics data. BMC Bioinform. 9 (2008 )export record
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Markus Bundschus , Mathäus Dejori , Martin Stetter , Volker Tresp , Hans-Peter Kriegel : Extraction of semantic biomedical relations from text using conditional random fields. BMC Bioinform. 9 (2008 )export record
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Marcel Schmidt am Busch , Anne Lopes , Najette Amara , Christine Bathelt , Thomas Simonson : Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design. BMC Bioinform. 9 (2008 )export record
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William S. Bush , Todd L. Edwards , Scott M. Dudek , Brett A. McKinney , Marylyn D. Ritchie : Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinform. 9 (2008 )export record
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Max Bylesjö , Mattias Rantalainen , Jeremy K. Nicholson , Elaine Holmes , Johan Trygg : K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space. BMC Bioinform. 9 (2008 )export record
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Christopher Bystroff , Bobbie-Jo M. Webb-Robertson : Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure. BMC Bioinform. 9 (2008 )export record
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Daniel R. Caffrey , Elizabeth A. Lunney , Deborah J. Moshinsky : Prediction of specificity-determining residues for small-molecule kinase inhibitors. BMC Bioinform. 9 (2008 )export record
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David A. Cairns , David N. Perkins , Anthea J. Stanley , Douglas Thompson , Jennifer H. Barrett , Peter J. Selby , Rosamonde E. Banks : Integrated multi-level quality control for proteomic profiling studies using mass spectrometry. BMC Bioinform. 9 (2008 )