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Joshua D. Wofford , Paul A. Lindahl : A mathematical model of iron import and trafficking in wild-type and Mrs3/4ΔΔ yeast cells. BMC Syst. Biol. 13 (1 ) : 23:1-23:16 (2019 )share record
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Lili Wu , Hongli Wang , Qi Ouyang : Constructing network topologies for multiple signal-encoding functions. BMC Syst. Biol. 13 (1 ) : 6:1-6:13 (2019 )share record
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Hansheng Xue , Jiajie Peng , Xuequn Shang : Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO. BMC Syst. Biol. 13-S (2 ) : 34:1-34:12 (2019 )export record
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Laurence Yang , Ali Ebrahim , Colton J. Lloyd , Michael A. Saunders , Bernhard O. Palsson : DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression. BMC Syst. Biol. 13 (1 ) : 2:1-2:15 (2019 )export record
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Mary Qu Yang , Sherman Morton Weissman , William Yang , Jialing Zhang , Allon Canaan , Renchu Guan : Correction to: MISC: missing imputation for single-cell RNA sequencing data. BMC Syst. Biol. 13 (1 ) : 13:1 (2019 )export record
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Qichang Yang , Jing Wu , Jian Zhao , Tianyi Xu , Zhongming Zhao , Xiaofeng Song , Ping Han : Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells. BMC Syst. Biol. 13 (1 ) : 14:1 (2019 )share record
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Xiaoxin Ye , Joshua Wing Kei Ho : Ultrafast clustering of single-cell flow cytometry data using FlowGrid. BMC Syst. Biol. 13-S (2 ) : 35:1-35:8 (2019 )share record
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Hong Zeng , Aidong Yang : Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways. BMC Syst. Biol. 13 (1 ) : 3:1-3:18 (2019 )export record
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Yuqi Zhao , Deepali Jhamb , Le Shu , Douglas Arneson , Deepak K. Rajpal , Xia Yang : Multi-omics integration reveals molecular networks and regulators of psoriasis. BMC Syst. Biol. 13 (1 ) : 8:1-8:14 (2019 )export record
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journals/bmcsb/ZubairovaVOED19 share record
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Ulyana S. Zubairova , Pavel Yu. Verman , Polina A. Oshchepkova , Alina S. Elsukova , Alexey V. Doroshkov : LSM-W2: laser scanning microscopy worker for wheat leaf surface morphology. BMC Syst. Biol. 13-S (1 ) : 33-44 (2019 )2018 share record
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Rajat Anand , Dipanka Sarmah , Samrat Chatterjee : Extracting proteins involved in disease progression using temporally connected networks. BMC Syst. Biol. 12 (1 ) : 78:1-78:13 (2018 )export record
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journals/bmcsb/AshtianiSRHWMJ18 share record
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Minoo Ashtiani , Ali Salehzadeh-Yazdi , Zahra Razaghi-Moghadam , Holger Hennig , Olaf Wolkenhauer , Mehdi Mirzaie , Mohieddin Jafari : A systematic survey of centrality measures for protein-protein interaction networks. BMC Syst. Biol. 12 (1 ) : 80:1-80:17 (2018 )export record
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journals/bmcsb/BelorkarVW18 share record
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Abha Belorkar , Rajanikanth Vadigepalli , Limsoon Wong : SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data. BMC Syst. Biol. 12 (S-2 ) : 93-108 (2018 )export record
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journals/bmcsb/BuigaETS18 share record
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Petronela Buiga , Ari Elson , Lydia Tabernero , Jean-Marc Schwartz : Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis. BMC Syst. Biol. 12 (1 ) : 13-24 (2018 )share record
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Yan-feng Cao , Shi-feng Wang , Xi Li , Yan-ling Zhang , Yanjiang Qiao : The anticancer mechanism investigation of Tanshinone IIA by pharmacological clustering in protein network. BMC Syst. Biol. 12 (1 ) : 90:1-90:12 (2018 )export record
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journals/bmcsb/CasagrandaTRG18 share record
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Stefano Casagranda , Suzanne Touzeau , Delphine Ropers , Jean-Luc Gouzé : Principal process analysis of biological models. BMC Syst. Biol. 12 (1 ) : 68:1-68:26 (2018 )share record
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Sang-Mok Choo , Byunghyun Ban , Jae Il Joo , Kwang-Hyun Cho : The phenotype control kernel of a biomolecular regulatory network. BMC Syst. Biol. 12 (1 ) : 49:1-49:15 (2018 )export record
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Steven B. Cogill , Anand K. Srivastava , Mary Qu Yang , Liangjiang Wang : Co-expression of long non-coding RNAs and autism risk genes in the developing human brain. BMC Syst. Biol. 12 (7 ) : 65-73 (2018 )export record
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journals/bmcsb/ConradKHKMVGJBV18 share record
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Theresia Conrad , Olaf Kniemeyer , Sebastian Henkel , Thomas Krüger , D. J. Mattern , Vito Valiante , Reinhard Guthke , I. D. Jacobsen , Axel A. Brakhage , Sebastian Vlaic , Jörg Linde : Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. BMC Syst. Biol. 12 (1 ) : 88:1-88:18 (2018 )export record
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Daniel Cook , Sirisha Achanta , Jan B. Hoek , Babatunde A. Ogunnaike , Rajanikanth Vadigepalli : Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics. BMC Syst. Biol. 12 (1 ) : 86:1-86:29 (2018 )share record
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Fangshu Cui , Bo Yuan : Fixation probability of a beneficial mutation conferring decreased generation time in changing environments. BMC Syst. Biol. 12 (4 ) : 157-166 (2018 )share record
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Wentao Dai , Quanxue Li , Bing-Ya Liu , Yi-Xue Li , Yuan-Yuan Li : Differential networking meta-analysis of gastric cancer across Asian and American racial groups. BMC Syst. Biol. 12 (4 ) : 17-28 (2018 )export record
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Elena S. Dimitrova , Leslie A. Caromile , Reinhard C. Laubenbacher , Linda H. Shapiro : The innate immune response to ischemic injury: a multiscale modeling perspective. BMC Syst. Biol. 12 (1 ) : 50:1-50:13 (2018 )export record
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Xin Fang , Jonathan M. Monk , Nathan Mih , Bin Du , Anand Sastry , Erol S. Kavvas , Yara Seif , Larry Smarr , Bernhard O. Palsson : Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. BMC Syst. Biol. 12 (1 ) : 66:1-66:10 (2018 )export record
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journals/bmcsb/Folch-FortunyTH18 share record
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Abel Folch-Fortuny , Bas Teusink , Huub C. J. Hoefsloot , Age K. Smilde , Alberto Ferrer : Dynamic elementary mode modelling of non-steady state flux data. BMC Syst. Biol. 12 (1 ) : 71:1-71:15 (2018 )export record
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Håvard G. Frøysa , Shirin Fallahi , Nello Blaser : Evaluating model reduction under parameter uncertainty. BMC Syst. Biol. 12 (1 ) : 79:1-79:10 (2018 )export record
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journals/bmcsb/FuWHLJOZG18 share record
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Min Fu , Wenming Wu , Xiafei Hong , Qiuhua Liu , Jialin Jiang , Yaobin Ou , Yupei Zhao , Xinqi Gong : Hierarchical combinatorial deep learning architecture for pancreas segmentation of medical computed tomography cancer images. BMC Syst. Biol. 12 (4 ) : 119-127 (2018 )export record
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Ping Gong , Keri B. Donohue , Anne M. Mayo , Yuping Wang , Huixiao Hong , Mitchell S. Wilbanks , Natalie D. Barker , Xin Guan , Kurt A. Gust : Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans. BMC Syst. Biol. 12 (7 ) : 31-46 (2018 )export record
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journals/bmcsb/Gonzalez-Menendez18 share record
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Víctor González-Menéndez , Germán Martínez , Rachel Serrano , Francisca Muñoz , Jesús Martín , Olga Genilloud , José R. Tormo : Ultraviolet (IUV) and mass spectrometry (IMS) imaging for the deconvolution of microbial interactions. BMC Syst. Biol. 12 (5 ) : 91-97 (2018 )export record
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Mengjie Guo , Sicheng Lu , Hongming Huang , Yaohui Wang , Mary Qu Yang , Ye Yang , Zhimin Fan , Bin Jiang , Youping Deng : Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. BMC Syst. Biol. 12 (7 ) : 11-17 (2018 )