- 2004
- Dmitry A. Afonnikov
, Nikolay A. Kolchanov
:
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Nucleic Acids Res. 32(Web-Server-Issue): 64-68 (2004) - Shandar Ahmad
, Akinori Sarai:
Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins. Nucleic Acids Res. 32(Web-Server-Issue): 104-107 (2004) - Keiko Akagi, Takeshi Suzuki, Robert M. Stephens, Nancy A. Jenkins, Neal G. Copeland:
RTCGD: retroviral tagged cancer gene database. Nucleic Acids Res. 32(Database-Issue): 523-527 (2004) - Wynand Alkema
, Öjvind Johansson, Jens Lagergren
, Wyeth W. Wasserman
:
MSCAN: identification of functional clusters of transcription factor binding sites. Nucleic Acids Res. 32(Web-Server-Issue): 195-198 (2004) - Nadim W. Alkharouf, Benjamin F. Matthews:
SGMD: the Soybean Genomics and Microarray Database. Nucleic Acids Res. 32(Database-Issue): 398-400 (2004) - Antonina Andreeva
, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 32(Database-Issue): 226-229 (2004) - Christophe Andreoli, Holger Prokisch
, K. Hörtnagel, Jakob C. Mueller, Martin Münsterkötter
, Curt Scharfe, Thomas Meitinger
:
MitoP2, an integrated database on mitochondrial proteins in yeast and man. Nucleic Acids Res. 32(Database-Issue): 459-462 (2004) - Mohd. Zeeshan Ansari, Gitanjali Yadav
, Rajesh S. Gokhale, Debasisa Mohanty
:
NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Res. 32(Web-Server-Issue): 405-413 (2004) - Kiyoko F. Aoki
, Atsuko Yamaguchi
, Nobuhisa Ueda, Tatsuya Akutsu
, Hiroshi Mamitsuka
, Susumu Goto, Minoru Kanehisa:
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res. 32(Web-Server-Issue): 267-272 (2004) - Rolf Apweiler
, Amos Bairoch
, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger
, Hongzhan Huang, Rodrigo Lopez
, Michele Magrane
, Maria Jesus Martin
, Darren A. Natale, Claire O'Donovan, Nicole Redaschi
, Lai-Su L. Yeh:
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32(Database-Issue): 115-119 (2004) - Masafumi Arai, Hironori Mitsuke, Masami Ikeda
, Jun-Xiong Xia, Takashi Kikuchi, Masanobu Satake, Toshio Shimizu:
ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability. Nucleic Acids Res. 32(Web-Server-Issue): 390-393 (2004) - György Babnigg, Carol S. Giometti:
GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes. Nucleic Acids Res. 32(Database-Issue): 582-585 (2004) - Pantelis G. Bagos
, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas:
PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins. Nucleic Acids Res. 32(Web-Server-Issue): 400-404 (2004) - Detlev Bannasch, Alexander Mehrle, Karl-Heinz Glatting, Rainer Pepperkok
, Annemarie Poustka, Stefan Wiemann
:
LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system. Nucleic Acids Res. 32(Database-Issue): 505-508 (2004) - Aurélien Barré, Antoine de Daruvar, Alain Blanchard
:
MolliGen, a database dedicated to the comparative genomics of Mollicutes. Nucleic Acids Res. 32(Database-Issue): 307-310 (2004) - Alex Bateman
, Lachlan James M. Coin
, Richard Durbin
, Robert D. Finn
, Volker Hollich, Sam Griffiths-Jones
, Ajay Khanna, Mhairi Marshall, Simon Moxon
, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy
:
The Pfam protein families database. Nucleic Acids Res. 32(Database-Issue): 138-141 (2004) - Thierry-Pascal Baum, Nicolas Pasqual, Florence Thuderoz, Vivien Hierle, Denys Chaume, Marie-Paule Lefranc, Evelyne Jouvin-Marche
, Patrice-Noël Marche
, Jacques Demongeot:
IMGT/GeneInfo: enhancing V(D)J recombination database accessibility. Nucleic Acids Res. 32(Database-Issue): 51-54 (2004) - K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai:
ProTherm, version 4.0: thermodynamic database for proteins and mutants. Nucleic Acids Res. 32(Database-Issue): 120-121 (2004) - Peter Bengert, Thomas Dandekar
:
Riboswitch finder tool for identification of riboswitch RNAs. Nucleic Acids Res. 32(Web-Server-Issue): 154-159 (2004) - Dennis A. Benson, Ilene Karsch-Mizrachi
, David J. Lipman, James Ostell, David L. Wheeler:
GenBank: update. Nucleic Acids Res. 32(Database-Issue): 23-26 (2004) - Frode S. Berven, Kristian Flikka, Harald B. Jensen, Ingvar Eidhammer:
BOMP: a program to predict integral ?barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Nucleic Acids Res. 32(Web-Server-Issue): 394-399 (2004) - Anirban Bhaduri, Ganesan Pugalenthi
, Nitin Gupta
, Ramanathan Sowdhamini:
iMOT: an interactive package for the selection of spatially interacting motifs. Nucleic Acids Res. 32(Web-Server-Issue): 602-605 (2004) - Manoj Bhasin
, G. P. S. Raghava
:
GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic Acids Res. 32(Web-Server-Issue): 383-389 (2004) - Manoj Bhasin
, G. P. S. Raghava
:
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST. Nucleic Acids Res. 32(Web-Server-Issue): 414-419 (2004) - T. Andrew Binkowski, Patrick Freeman, Jie Liang:
pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins. Nucleic Acids Res. 32(Web-Server-Issue): 555-558 (2004) - Ewan Birney
, T. Daniel Andrews, Paul Bevan
, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke
, Guy Coates
, Tony Cox, James A. Cuff
, Val Curwen, Tim Cutts, Thomas A. Down, Richard Durbin
, Eduardo Eyras
, Xosé M. Fernández-Suárez, Paul J. Gane
, B. Gibbins, James G. R. Gilbert
, Martin Hammond, H. Hotz, Vivek Iyer, Andreas Kähäri
, Kerstin Jekosch
, Arek Kasprzyk, Damian Keefe, Stephen Keenan
, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater
, Damian Smedley, James A. Smith
, William Spooner, Arne Stabenau, Jim Stalker, R. Storey
, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard:
Ensembl 2004. Nucleic Acids Res. 32(Database-Issue): 468-470 (2004) - Olivier Bodenreider:
The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res. 32(Database-Issue): 267-270 (2004) - Philip E. Bourne, Kenneth J. Addess, Wolfgang Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Kramer Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John D. Westbrook, Helen M. Berman
:
The distribution and query systems of the RCSB Protein Data Bank. Nucleic Acids Res. 32(Database-Issue): 223-225 (2004) - Manisha Brahmachary, S. P. T. Krishnan, Judice L. Y. Koh, Asif M. Khan, Seng Hong Seah, Tin Wee Tan, Vladimir Brusic, Vladimir B. Bajic:
ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res. 32(Database-Issue): 586-589 (2004) - Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern:
The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Res. 32(Web-Server-Issue): 41-44 (2004)