- 2003
- Nancy M. Amato, Ken A. Dill, Guang Song:
Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures. J. Comput. Biol. 10(3/4): 239-255 (2003) - Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma:
Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. J. Comput. Biol. 10(3/4): 257-281 (2003) - Alberto Apostolico, Mary Ellen Bock, Stefano Lonardi:
Monotony of Surprise and Large-Scale Quest for Unusual Words. J. Comput. Biol. 10(3/4): 283-311 (2003) - Peter F. Arndt, Christopher B. Burge, Terence Hwa:
DNA Sequence Evolution with Neighbor-Dependent Mutation. J. Comput. Biol. 10(3/4): 313-322 (2003) - Magnus Åstrand:
Contrast Normalization of Oligonucleotide Arrays. J. Comput. Biol. 10(1): 95-102 (2003) - Vineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph:
Haplotyping as Perfect Phylogeny: A Direct Approach. J. Comput. Biol. 10(3/4): 323-340 (2003) - Ziv Bar-Joseph, Georg K. Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon:
Continuous Representations of Time-Series Gene Expression Data. J. Comput. Biol. 10(3/4): 341-356 (2003) - Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Yakhini:
Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem. J. Comput. Biol. 10(3/4): 373-384 (2003) - Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir:
The Restriction Scaffold Problem. J. Comput. Biol. 10(3/4): 385-398 (2003) - Sèverine Bérard, Eric Rivals:
Comparison of Minisatellites. J. Comput. Biol. 10(3/4): 357-372 (2003) - Jeremy Buhler:
Provably Sensitive Indexing Strategies for Biosequence Similarity Search. J. Comput. Biol. 10(3/4): 399-417 (2003) - Sujay Chattopadhyay, Jayprokas Chakrabarti:
Temporal Changes in Phosphoglycerate Kinase Coding Sequences: A Quantitative Measure. J. Comput. Biol. 10(1): 83-93 (2003) - Fan R. K. Chung, Linyuan Lu, T. Gregory Dewey, David J. Galas:
Duplication Models for Biological Networks. J. Comput. Biol. 10(5): 677-687 (2003) - Barry Cohen, Steven Skiena:
Natural Selection and Algorithmic Design of mRNA. J. Comput. Biol. 10(3/4): 419-432 (2003) - Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun:
Prediction of Protein Function Using Protein-Protein Interaction Data. J. Comput. Biol. 10(6): 947-960 (2003) - Ron O. Dror, Jonathan G. Murnick, Nicola J. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young:
Bayesian Estimation of Transcript Levels Using a General Model of Array Measurement Noise. J. Comput. Biol. 10(3/4): 433-452 (2003) - Dannie Durand, David Sankoff:
Tests for Gene Clustering. J. Comput. Biol. 10(3/4): 453-482 (2003) - Eleazar Eskin, William Stafford Noble, Yoram Singer:
Protein Family Classification Using Sparse Markov Transducers. J. Comput. Biol. 10(2): 187-213 (2003) - Daniel Faller, Henning U. Voss, Jens Timmer, Uwe Hobohm:
Normalization of DNA-Microarray Data by Nonlinear Correlation Maximization. J. Comput. Biol. 10(5): 751-762 (2003) - Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir:
Handling Long Targets and Errors in Sequencing by Hybridization. J. Comput. Biol. 10(3/4): 483-497 (2003) - Samuel A. Heath, Franco P. Preparata, Joel Young:
Sequencing by Hybridization by Cooperating Direct and Reverse Spectra. J. Comput. Biol. 10(3/4): 499-508 (2003) - Lenwood S. Heath, John Paul C. Vergara:
Sorting by Short Swaps. J. Comput. Biol. 10(5): 775-789 (2003) - Frank K. Hwang, Yu-Chi Liu:
Error-Tolerant Pooling Designs with Inhibitors. J. Comput. Biol. 10(2): 231-236 (2003) - Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu:
Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. J. Comput. Biol. 10(6): 981-995 (2003) - Henrik Jönsson, Bo Söderberg:
An Approximate Maximum Likelihood Approach, Applied to Phylogenetic Trees. J. Comput. Biol. 10(5): 737-749 (2003) - M. Kathleen Kerr:
Linear Models for Microarray Data Analysis: Hidden Similarities and Differences. J. Comput. Biol. 10(6): 891-901 (2003) - Yinglei Lai, Deepali Shinde, Norman Arnheim, Fengzhu Sun:
The Mutation Process of Microsatellites During the Polymerase Chain Reaction. J. Comput. Biol. 10(2): 143-155 (2003) - Fumei Lam, Marina Alexandersson, Lior Pachter:
Picking Alignments from (Steiner) Trees. J. Comput. Biol. 10(3/4): 509-520 (2003) - Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald:
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. J. Comput. Biol. 10(3/4): 521-536 (2003) - Xueliang Li, Zimao Li, Lusheng Wang:
The Inverse Problems for Some Topological Indices in Combinatorial Chemistry. J. Comput. Biol. 10(1): 47-55 (2003)