default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDEric Rivals
Person information
- affiliation: CNRS & Univ. Montpellier, France
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[i9]Eric Rivals, Pengfei Wang:
Counting overlapping pairs of strings. CoRR abs/2405.09393 (2024)- 2023
- [j32]Marie Mille, Julie Ripoll
, Bastien Cazaux, Eric Rivals:
dipwmsearch: a Python package for searching di-PWM motifs. Bioinform. 39(4) (2023) - [j31]Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals:
EPIK: precise and scalable evolutionary placement with informative k-mers. Bioinform. 39(12) (2023) - [j30]Carole Chevalier, Jérôme Dorignac, Yahaya Ibrahim, Armelle Choquet, Alexandre David, Julie Ripoll, Eric Rivals, Frédéric Geniet, Nils-Ole Walliser, John Palmeri, Andrea Parmeggiani, Jean-Charles Walter:
Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model. PLoS Comput. Biol. 19(10) (2023) - [j29]Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi:
Computing Phylo-$k$k-Mers. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2889-2897 (2023) - [c29]Eric Rivals, Michelle Sweering, Pengfei Wang:
Convergence of the Number of Period Sets in Strings. ICALP 2023: 100:1-100:14 - [c28]Estéban Gabory, Eric Rivals, Michelle Sweering, Hilde Verbeek, Pengfei Wang:
Periodicity of Degenerate Strings. PSC 2023: 42-56 - 2022
- [i8]Eric Rivals, Michelle Sweering, Pengfei Wang:
Convergence of the number of period sets in strings. CoRR abs/2209.08926 (2022) - 2021
- [j28]Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals:
PEWO: a collection of workflows to benchmark phylogenetic placement. Bioinform. 36(21): 5264-5266 (2021) - [j27]Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi:
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. Bioinform. 36(22-23): 5351-5360 (2021) - [c27]Sangsoo Park, Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals:
A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs. CPM 2021: 22:1-22:9 - [i7]Sangsoo Park, Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals:
A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs. CoRR abs/2102.12824 (2021) - 2020
- [j26]Bastien Cazaux, Eric Rivals:
Hierarchical Overlap Graph. Inf. Process. Lett. 155 (2020) - [c26]Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals:
Efficient Construction of Hierarchical Overlap Graphs. SPIRE 2020: 277-290 - [i6]Bastien Cazaux, Eric Rivals:
Greedy-reduction from Shortest Linear Superstring to Shortest Circular Superstring. CoRR abs/2012.08878 (2020)
2010 – 2019
- 2019
- [j25]Bastien Cazaux, Guillaume Castel, Eric Rivals:
AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees. Bioinform. 35(17): 3163-3165 (2019) - [j24]Bastien Cazaux, Thierry Lecroq, Eric Rivals:
Linking indexing data structures to de Bruijn graphs: Construction and update. J. Comput. Syst. Sci. 104: 165-183 (2019) - [c25]Bastien Cazaux, Eric Rivals:
Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding. CPM 2019: 24:1-24:20 - 2018
- [j23]Bastien Cazaux, Eric Rivals:
Relationship between superstring and compression measures: New insights on the greedy conjecture. Discret. Appl. Math. 245: 59-64 (2018) - [c24]David Martin, Vincent Maillol, Eric Rivals:
Fast and Accurate Genome-Scale Identification of DNA-Binding Sites. BIBM 2018: 201-205 - [c23]Bastien Cazaux, Eric Rivals:
Superstrings with multiplicities. CPM 2018: 21:1-21:16 - [c22]Bastien Cazaux, Samuel Juhel, Eric Rivals:
Practical lower and upper bounds for the Shortest Linear Superstring. SEA 2018: 18:1-18:14 - [i5]Bastien Cazaux, Eric Rivals:
Hierarchical Overlap Graph. CoRR abs/1802.04632 (2018) - [i4]Bastien Cazaux, Eric Rivals:
Strong link between BWT and XBW via Aho-Corasick automaton and applications to Run-Length Encoding. CoRR abs/1805.10070 (2018) - 2017
- [j22]Leena Salmela, Riku Walve, Eric Rivals, Esko Ukkonen:
Accurate self-correction of errors in long reads using de Bruijn graphs. Bioinform. 33(6): 799-806 (2017) - [c21]Rodrigo Cánovas, Eric Rivals:
Full Compressed Affix Tree Representations. DCC 2017: 102-111 - [c20]Sylvain Pulicani, Pijus Simonaitis, Eric Rivals, Krister M. Swenson:
Rearrangement Scenarios Guided by Chromatin Structure. RECOMB-CG 2017: 141-155 - [i3]Rodrigo Cánovas, Bastien Cazaux, Eric Rivals:
The Compressed Overlap Index. CoRR abs/1707.05613 (2017) - 2016
- [j21]Antoine Limasset, Bastien Cazaux, Eric Rivals, Pierre Peterlongo:
Read mapping on de Bruijn graphs. BMC Bioinform. 17: 237 (2016) - [j20]Bastien Cazaux, Eric Rivals:
The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings. Discret. Appl. Math. 212: 48-60 (2016) - [j19]Bastien Cazaux, Eric Rivals:
A linear time algorithm for Shortest Cyclic Cover of Strings. J. Discrete Algorithms 37: 56-67 (2016) - [c19]Bastien Cazaux, Gustavo Sacomoto, Eric Rivals:
Superstring Graph: A New Approach for Genome Assembly. AAIM 2016: 39-52 - [c18]Bastien Cazaux, Rodrigo Cánovas, Eric Rivals:
Shortest DNA Cyclic Cover in Compressed Space. DCC 2016: 536-545 - 2015
- [j18]Raluca Uricaru, Célia Michotey, Hélène Chiapello, Eric Rivals:
YOC, A new strategy for pairwise alignment of collinear genomes. BMC Bioinform. 16: 111:1-111:16 (2015) - [c17]Bastien Cazaux, Thierry Lecroq, Eric Rivals:
Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree. LATA 2015: 109-120 - 2014
- [j17]Leena Salmela, Eric Rivals:
LoRDEC: accurate and efficient long read error correction. Bioinform. 30(24): 3506-3514 (2014) - [j16]Bastien Cazaux, Eric Rivals:
Reverse engineering of compact suffix trees and links: A novel algorithm. J. Discrete Algorithms 28: 9-22 (2014) - [c16]Bastien Cazaux, Thierry Lecroq, Eric Rivals:
From Indexing Data Structures to de Bruijn Graphs. CPM 2014: 89-99 - [c15]Bastien Cazaux, Eric Rivals:
Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings. Stringology 2014: 148-161 - 2013
- [c14]Niko Välimäki, Eric Rivals:
Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data. ISBRA 2013: 237-248 - 2012
- [i2]Eric Rivals, Nicolas Philippe, Mikaël Salson, Martine Léonard, Therese Commes, Thierry Lecroq:
A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections. ERCIM News 2012(89) (2012) - 2011
- [j15]Nicolas Philippe, Mikaël Salson, Thierry Lecroq, Martine Léonard, Therese Commes, Eric Rivals:
Querying large read collections in main memory: a versatile data structure. BMC Bioinform. 12: 242 (2011) - [j14]Raluca Uricaru, Alban Mancheron, Eric Rivals:
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. J. Comput. Biol. 18(9): 1141-1154 (2011) - [c13]Annie Chateau, Pierre Riou, Eric Rivals:
Approximate Common Intervals in Multiple Genome Comparison. BIBM 2011: 131-134 - 2010
- [c12]Raluca Uricaru, Alban Mancheron, Eric Rivals:
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. RECOMB-CG 2010: 161-172 - [i1]Eric Rivals, Alban Mancheron, Raluca Uricaru:
Reliable Bacterial Genome Comparison Tools. ERCIM News 2010(82): 17 (2010)
2000 – 2009
- 2009
- [c11]Eric Rivals, Leena Salmela, Petteri Kiiskinen, Petri Kalsi, Jorma Tarhio:
mpscan: Fast Localisation of Multiple Reads in Genomes. WABI 2009: 246-260 - 2008
- [j13]François Nicolas, Eric Rivals:
Hardness of optimal spaced seed design. J. Comput. Syst. Sci. 74(5): 831-849 (2008) - 2007
- [j12]Sébastien Leclercq, Eric Rivals, Philippe Jarne:
Detecting microsatellites within genomes: significant variation among algorithms. BMC Bioinform. 8 (2007) - [j11]Ezekiel F. Adebiyi, Eric Rivals:
Detection of recombination in variable number tandem repeat sequences. South Afr. Comput. J. 39: 1-7 (2007) - [j10]François Nicolas, Eric Rivals:
Longest common subsequence problem for unoriented and cyclic strings. Theor. Comput. Sci. 370(1-3): 1-18 (2007) - 2006
- [c10]Olivier Bodini, Eric Rivals:
Tiling an Interval of the Discrete Line. CPM 2006: 117-128 - 2005
- [j9]François Nicolas, Eric Rivals:
Hardness results for the center and median string problems under the weighted and unweighted edit distances. J. Discrete Algorithms 3(2-4): 390-415 (2005) - [c9]François Nicolas, Eric Rivals:
Hardness of Optimal Spaced Seed Design. CPM 2005: 144-155 - 2004
- [j8]Olivier Delgrange, Eric Rivals:
STAR: an algorithm to Search for Tandem Approximate Repeats. Bioinform. 20(16): 2812-2820 (2004) - [j7]Eric Rivals:
A Survey On Algorithmic Aspects Of Tandem Repeats Evolution. Int. J. Found. Comput. Sci. 15(2): 225-257 (2004) - 2003
- [j6]Sven Rahmann, Eric Rivals:
On The Distribution Of The Number Of Missing Words In Random Texts. Comb. Probab. Comput. 12(1): 73-87 (2003) - [j5]Sèverine Bérard, Eric Rivals:
Comparison of Minisatellites. J. Comput. Biol. 10(3/4): 357-372 (2003) - [j4]Eric Rivals, Sven Rahmann:
Combinatorics of periods in strings. J. Comb. Theory A 104(1): 95-113 (2003) - [c8]François Nicolas, Eric Rivals:
Complexities of the Centre and Median String Problems. CPM 2003: 315-327 - 2002
- [c7]Sèverine Bérard, Eric Rivals:
Comparison of minisatellites. RECOMB 2002: 67-76 - 2001
- [c6]Eric Rivals, Sven Rahmann:
Combinatorics of Periods in Strings. ICALP 2001: 615-626 - 2000
- [c5]Sven Rahmann, Eric Rivals:
Exact and Efficient Computation of the Expected Number of Missing and Common Words in Random Texts. CPM 2000: 375-387
1990 – 1999
- 1999
- [j3]Jean-Stéphane Varré, Jean-Paul Delahaye, Eric Rivals:
Transformation distances: a family of dissimilarity measures based on movements of segments. Bioinform. 15(3): 194-202 (1999) - [c4]Olivier Delgrange, Max Dauchet, Eric Rivals:
Location of Repetitive Regions in Sequences By Optimizing A Compression Method. Pacific Symposium on Biocomputing 1999: 254-265 - [c3]Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron:
q-gram based database searching using a suffix array (QUASAR). RECOMB 1999: 77-83 - 1998
- [j2]Eric Rivals, Jean-Paul Delahaye:
Optimal Representation in Average Using Kolmogorov Complexity. Theor. Comput. Sci. 200(1-2): 261-287 (1998) - [c2]Jean-Stéphane Varré, Jean-Paul Delahaye, Eric Rivals:
The transformation distance: A dissimilarity measure based an movements of segments. German Conference on Bioinformatics 1998 - 1997
- [j1]Eric Rivals, Olivier Delgrange, Jean-Paul Delahaye, Max Dauchet, Marie-Odile Delorme, Alain Hénaut, Emmanuelle Ollivier:
Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences. Comput. Appl. Biosci. 13(2): 131-136 (1997) - 1996
- [c1]Eric Rivals, Jean-Paul Delahaye, Max Dauchet, Olivier Delgrange:
A Guaranteed Compression Scheme for Repetitive DNA Sequences. Data Compression Conference 1996: 453
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:12 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
