- 2023
- Paolo Ballarini, Mahmoud Bentriou, Paul-Henry Cournède:
A Formal Approach for Tuning Stochastic Oscillators. CMSB 2023: 1-17 - Nikola Benes
, Lubos Brim
, Samuel Pastva
, David Safránek
, Eva Smijáková:
Phenotype Control of Partially Specified Boolean Networks. CMSB 2023: 18-35 - Lorenzo Contento
, Paul Stapor
, Daniel Weindl
, Jan Hasenauer
:
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI. CMSB 2023: 36-43 - Pelin Gundogdu
, Miriam Payá-Milans
, Inmaculada Alamo-Alvarez
, Isabel A. Nepomuceno-Chamorro
, Joaquín Dopazo
, Carlos Loucera
:
Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder. CMSB 2023: 62-77 - Mathieu Hemery, François Fages:
On Estimating Derivatives of Input Signals in Biochemistry. CMSB 2023: 78-96 - Ulysse Herbach
:
Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting. CMSB 2023: 97-105 - Alexander Leguizamon-Robayo, Antonio Jiménez-Pastor
, Mirco Tribastone, Max Tschaikowski
, Andrea Vandin
:
Approximate Constrained Lumping of Polynomial Differential Equations. CMSB 2023: 106-123 - Rocco De Nicola, Luca Di Stefano, Omar Inverso, Serenella Valiani:
Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants. CMSB 2023: 44-61 - Joachim Niehren, Cédric Lhoussaine, Athénaïs Vaginay:
Core SBML and Its Formal Semantics. CMSB 2023: 124-143 - Elisabeth Remy, Paul Ruet:
Average Sensitivity of Nested Canalizing Multivalued Functions. CMSB 2023: 144-156 - Sara Riva, Jean-Marie Lagniez, Gustavo Magaña López, Loïc Paulevé:
Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks. CMSB 2023: 157-174 - Takehide Soh
, Morgan Magnin
, Daniel Le Berre
, Mutsunori Banbara
, Naoyuki Tamura
:
SAF: SAT-Based Attractor Finder in Asynchronous Automata Networks. CMSB 2023: 175-183 - Honglu Sun
, Maxime Folschette
, Morgan Magnin
:
Condition for Periodic Attractor in 4-Dimensional Repressilators. CMSB 2023: 184-201 - Elisa Tonello
, Loïc Paulevé
:
Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction. CMSB 2023: 202-219 - Lilly Maria Treml
:
3D Hybrid Cellular Automata for Cardiac Electrophysiology: A Concept Study. CMSB 2023: 220-235 - Lancelot Wathieu, Gus Henry Smith, Luis Ceze, Chris Thachuk:
Fridge Compiler: Optimal Circuits from Molecular Inventories. CMSB 2023: 236-252 - Iryna Zabaikina
, Pavol Bokes
, Abhyudai Singh
:
Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. CMSB 2023: 253-268 - Jun Pang
, Joachim Niehren
:
Computational Methods in Systems Biology - 21st International Conference, CMSB 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings. Lecture Notes in Computer Science 14137, Springer 2023, ISBN 978-3-031-42696-4 [contents] - 2022
- Georgios Argyris
, Alberto Lluch-Lafuente
, Mirco Tribastone
, Max Tschaikowski
, Andrea Vandin
:
An Extension of ERODE to Reduce Boolean Networks By Backward Boolean Equivalence. CMSB 2022: 294-301 - Svitlana Braichenko
, Ramon Grima
, Guido Sanguinetti
:
Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions. CMSB 2022: 239-258 - Fabricio Cravo, Matthias Függer, Thomas Nowak, Gayathri Prakash:
MobsPy: A Meta-species Language for Chemical Reaction Networks. CMSB 2022: 277-285 - Aurélien Desoeuvres
, Peter Szmolyan, Ovidiu Radulescu:
Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. CMSB 2022: 61-85 - Eléa Thibault Greugny
, Georgios N. Stamatas, François Fages:
Stability Versus Meta-stability in a Skin Microbiome Model. CMSB 2022: 179-197 - Martin Helfrich
, Milan Ceska
, Jan Kretínský
, Stefan Marticek
:
Abstraction-Based Segmental Simulation of Chemical Reaction Networks. CMSB 2022: 41-60 - Mathieu Hemery, François Fages:
Algebraic Biochemistry: A Framework for Analog Online Computation in Cells. CMSB 2022: 3-20 - Antonio Jiménez-Pastor
, Joshua Paul Jacob, Gleb Pogudin:
Exact Linear Reduction for Rational Dynamical Systems. CMSB 2022: 198-216 - Ville Laitinen
, Leo Lahti
:
Probabilistic Multivariate Early Warning Signals. CMSB 2022: 259-274 - Joachim Niehren
, Athénaïs Vaginay
, Cristian Versari:
Abstract Simulation of Reaction Networks via Boolean Networks. CMSB 2022: 21-40 - Samuel Pastva:
Variable Stabilisation in Boolean Monotonic Model Pools. CMSB 2022: 122-137 - Clémence Réda
, Andrée Delahaye-Duriez
:
Prioritization of Candidate Genes Through Boolean Networks. CMSB 2022: 89-121