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21st CMSB 2023: Luxembourg City, Luxembourg
- Jun Pang
, Joachim Niehren
:
Computational Methods in Systems Biology - 21st International Conference, CMSB 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings. Lecture Notes in Computer Science 14137, Springer 2023, ISBN 978-3-031-42696-4 - Paolo Ballarini, Mahmoud Bentriou, Paul-Henry Cournède:
A Formal Approach for Tuning Stochastic Oscillators. 1-17 - Nikola Benes
, Lubos Brim
, Samuel Pastva
, David Safránek
, Eva Smijáková:
Phenotype Control of Partially Specified Boolean Networks. 18-35 - Lorenzo Contento
, Paul Stapor
, Daniel Weindl
, Jan Hasenauer
:
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI. 36-43 - Rocco De Nicola, Luca Di Stefano, Omar Inverso, Serenella Valiani:
Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants. 44-61 - Pelin Gundogdu
, Miriam Payá-Milans
, Inmaculada Alamo-Alvarez
, Isabel A. Nepomuceno-Chamorro
, Joaquín Dopazo
, Carlos Loucera
:
Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder. 62-77 - Mathieu Hemery, François Fages:
On Estimating Derivatives of Input Signals in Biochemistry. 78-96 - Ulysse Herbach
:
Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting. 97-105 - Alexander Leguizamon-Robayo, Antonio Jiménez-Pastor
, Mirco Tribastone, Max Tschaikowski
, Andrea Vandin
:
Approximate Constrained Lumping of Polynomial Differential Equations. 106-123 - Joachim Niehren, Cédric Lhoussaine, Athénaïs Vaginay:
Core SBML and Its Formal Semantics. 124-143 - Elisabeth Remy, Paul Ruet:
Average Sensitivity of Nested Canalizing Multivalued Functions. 144-156 - Sara Riva, Jean-Marie Lagniez, Gustavo Magaña López, Loïc Paulevé:
Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks. 157-174 - Takehide Soh
, Morgan Magnin
, Daniel Le Berre
, Mutsunori Banbara
, Naoyuki Tamura
:
SAF: SAT-Based Attractor Finder in Asynchronous Automata Networks. 175-183 - Honglu Sun
, Maxime Folschette
, Morgan Magnin
:
Condition for Periodic Attractor in 4-Dimensional Repressilators. 184-201 - Elisa Tonello
, Loïc Paulevé
:
Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction. 202-219 - Lilly Maria Treml
:
3D Hybrid Cellular Automata for Cardiac Electrophysiology: A Concept Study. 220-235 - Lancelot Wathieu, Gus Henry Smith, Luis Ceze, Chris Thachuk:
Fridge Compiler: Optimal Circuits from Molecular Inventories. 236-252 - Iryna Zabaikina
, Pavol Bokes
, Abhyudai Singh
:
Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. 253-268
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