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@article{DBLP:journals/bmcsb/AitkenA13,
author = {Stuart Aitken and
Ozgur E. Akman},
title = {Nested sampling for parameter inference in systems biology: application
to an exemplar circadian model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {72},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-72},
doi = {10.1186/1752-0509-7-72},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AitkenA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AmaraCCPCFBP13,
author = {Flavio Amara and
Riccardo Colombo and
Paolo Cazzaniga and
Dario Pescini and
Attila Csik{\'{a}}sz{-}Nagy and
Marco Falconi and
Daniela Besozzi and
Paolo Plevani},
title = {In vivo and in silico analysis of {PCNA} ubiquitylation in the activation
of the Post Replication Repair pathway in S. cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {24},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-24},
doi = {10.1186/1752-0509-7-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AmaraCCPCFBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AzmiBBPLYDRSM13,
author = {Asfar S. Azmi and
Aliccia Bollig{-}Fischer and
Bin Bao and
Bum{-}Joon Park and
Sun{-}Hye Lee and
Gyu Yong{-}Song and
Gregory Dyson and
Chandan K. Reddy and
Fazlul H. Sarkar and
Ramzi M. Mohammad},
title = {Systems analysis reveals a transcriptional reversal of the mesenchymal
phenotype induced by SNAIL-inhibitor {GN-25}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {85},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-85},
doi = {10.1186/1752-0509-7-85},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AzmiBBPLYDRSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BackZB13,
author = {Walter de Back and
Roland Zimm and
Lutz Brusch},
title = {Transdifferentiation of pancreatic cells by loss of contact-mediated
signaling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {77},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-77},
doi = {10.1186/1752-0509-7-77},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BackZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BaeRCHKK13,
author = {Taejeong Bae and
Kyoohyoung Rho and
Jin Woo Choi and
Katsuhisa Horimoto and
Wan Kyu Kim and
Sunghoon Kim},
title = {Identification of upstream regulators for prognostic expression signature
genes in colorectal cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {86},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-86},
doi = {10.1186/1752-0509-7-86},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BaeRCHKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarbaDLL13,
author = {Matthieu Barba and
Rapha{\"{e}}l Dutoit and
Christianne Legrain and
Bernard Labedan},
title = {Identifying reaction modules in metabolic pathways: bioinformatic
deduction and experimental validation of a new putative route in purine
catabolism},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {99},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-99},
doi = {10.1186/1752-0509-7-99},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BarbaDLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BaumlerMRP13,
author = {David J. Baumler and
Bing Ma and
Jennifer L. Reed and
Nicole T. Perna},
title = {Inferring ancient metabolism using ancestral core metabolic models
of enterobacteria},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {46},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-46},
doi = {10.1186/1752-0509-7-46},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BaumlerMRP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BershteynE13,
author = {Anna Bershteyn and
Philip A. Eckhoff},
title = {A model of {HIV} drug resistance driven by heterogeneities in host
immunity and adherence patterns},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {11},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-11},
doi = {10.1186/1752-0509-7-11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BershteynE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BesshoSSSMWKDJB13,
author = {Kazuhiko Bessho and
Kumar Shanmukhappa and
Rachel Sheridan and
Pranavkumar Shivakumar and
Reena Mourya and
Stephanie Walters and
Vivek Kaimal and
Eric Dilbone and
Anil G. Jegga and
Jorge A. Bezerra},
title = {Integrative genomics identifies candidate microRNAs for pathogenesis
of experimental biliary atresia},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {104},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-104},
doi = {10.1186/1752-0509-7-104},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BesshoSSSMWKDJB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BockmayrKGDB13,
author = {Michael Bockmayr and
Frederick Klauschen and
Balazs Gy{\"{o}}rffy and
Carsten Denkert and
Jan Budczies},
title = {New network topology approaches reveal differential correlation patterns
in breast cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {78},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-78},
doi = {10.1186/1752-0509-7-78},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BockmayrKGDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BogdalHKL13,
author = {Marta N. Bogdal and
Beata Hat and
Marek Kochanczyk and
Tomasz Lipniacki},
title = {Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator
Bcl-xL determine the type of the apoptotic logic gate},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {67},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-67},
doi = {10.1186/1752-0509-7-67},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BogdalHKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BonnetCRSBZ13,
author = {Eric Bonnet and
Laurence Calzone and
Daniel Rovera and
Gautier Stoll and
Emmanuel Barillot and
Andrei Yu. Zinovyev},
title = {BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways
using standard systems biology formats},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-18},
doi = {10.1186/1752-0509-7-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BonnetCRSBZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BorgosBSEJBENV13,
author = {Sven E. F. Borgos and
Sergio Bordel and
H{\aa}vard Sletta and
Helga Ertesv{\aa}g and
{\O}yvind M. Jakobsen and
Per Bruheim and
Trond E. Ellingsen and
Jens Nielsen and
Svein Valla},
title = {Mapping global effects of the anti-sigma factor MucA in Pseudomonas
fluorescens {SBW25} through genome-scale metabolic modeling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {19},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-19},
doi = {10.1186/1752-0509-7-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BorgosBSEJBENV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrenHDKA13,
author = {Anat Bren and
Yuval Hart and
Erez Dekel and
Daniel Koster and
Uri Alon},
title = {The last generation of bacterial growth in limiting nutrient},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {27},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-27},
doi = {10.1186/1752-0509-7-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrenHDKA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BryantSP13,
author = {William A. Bryant and
Michael J. E. Sternberg and
John W. Pinney},
title = {{AMBIENT:} Active Modules for Bipartite Networks - using high-throughput
transcriptomic data to dissect metabolic response},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {26},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-26},
doi = {10.1186/1752-0509-7-26},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BryantSP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13,
author = {Finja B{\"{u}}chel and
Nicolas Rodriguez and
Neil Swainston and
Clemens Wrzodek and
Tobias Czauderna and
Roland Keller and
Florian Mittag and
Michael Schubert and
Mihai Glont and
Martin Golebiewski and
Martijn P. van Iersel and
Sarah M. Keating and
Matthias Rall and
Michael Wybrow and
Henning Hermjakob and
Michael Hucka and
Douglas B. Kell and
Wolfgang M{\"{u}}ller and
Pedro Mendes and
Andreas Zell and
Claudine Chaouiya and
Julio Saez{-}Rodriguez and
Falk Schreiber and
Camille Laibe and
Andreas Dr{\"{a}}ger and
Nicolas Le Nov{\`{e}}re},
title = {Path2Models: large-scale generation of computational models from biochemical
pathway maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {116},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-116},
doi = {10.1186/1752-0509-7-116},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarreraJ13,
author = {Javier Carrera and
Alfonso Jaramillo},
title = {Automated design of bacterial genome sequences},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {108},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-108},
doi = {10.1186/1752-0509-7-108},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/CarreraJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChangXBP13,
author = {Roger L. Chang and
Lei Xie and
Philip E. Bourne and
Bernhard O. Palsson},
title = {Antibacterial mechanisms identified through structural systems pharmacology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {102},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-102},
doi = {10.1186/1752-0509-7-102},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChangXBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13,
author = {Claudine Chaouiya and
Duncan B{\'{e}}renguier and
Sarah M. Keating and
Aur{\'{e}}lien Naldi and
Martijn P. van Iersel and
Nicolas Rodriguez and
Andreas Dr{\"{a}}ger and
Finja B{\"{u}}chel and
Thomas Cokelaer and
Bryan M. Kowal and
Benjamin Wicks and
Emanuel J. V. Gon{\c{c}}alves and
Julien Dorier and
Michel Page and
Pedro T. Monteiro and
Axel von Kamp and
Ioannis Xenarios and
Hidde de Jong and
Michael Hucka and
Steffen Klamt and
Denis Thieffry and
Nicolas Le Nov{\`{e}}re and
Julio Saez{-}Rodriguez and
Tom{\'{a}}s Helikar},
title = {{SBML} qualitative models: a model representation format and infrastructure
to foster interactions between qualitative modelling formalisms and
tools},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {135},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-135},
doi = {10.1186/1752-0509-7-135},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChengFSG13,
author = {Chao Cheng and
Yao Fu and
Linsheng Shen and
Mark Gerstein},
title = {Identification of yeast cell cycle regulated genes based on genomic
features},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {70},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-70},
doi = {10.1186/1752-0509-7-70},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChengFSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChoWZTNC13,
author = {Hyunju Cho and
Ming Wu and
Linxia Zhang and
Ryan Thompson and
Aritro Nath and
Christina Chan},
title = {Signaling dynamics of palmitate-induced {ER} stress responses mediated
by {ATF4} in HepG2 cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {9},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-9},
doi = {10.1186/1752-0509-7-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChoWZTNC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoskunCLDOO13,
author = {Sarp A. Coskun and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Nicola Lai and
Ranjan K. Dash and
Z. Meral {\"{O}}zsoyoglu and
Gultekin {\"{O}}zsoyoglu},
title = {An online model composition tool for system biology models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {88},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-88},
doi = {10.1186/1752-0509-7-88},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CoskunCLDOO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrespoPJS13,
author = {Isaac Crespo and
Thanneer M. Perumal and
Wiktor Jurkowski and
Antonio del Sol},
title = {Detecting cellular reprogramming determinants by differential stability
analysis of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {140},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-140},
doi = {10.1186/1752-0509-7-140},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrespoPJS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DeminSSCPFBD13,
author = {Oleg O. Demin and
Sergey V. Smirnov and
Victor V. Sokolov and
Lourdes Cucurull{-}Sanchez and
C{\'{e}}sar Pichardo{-}Almarza and
M. Victoria Flores and
Neil Benson and
Oleg V. Demin},
title = {Modeling of celiac disease immune response and the therapeutic effect
of potential drugs},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {56},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-56},
doi = {10.1186/1752-0509-7-56},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DeminSSCPFBD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DentN13,
author = {Jennifer E. Dent and
Christine Nardini},
title = {From desk to bed: Computational simulations provide indication for
rheumatoid arthritis clinical trials},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {10},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-10},
doi = {10.1186/1752-0509-7-10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DentN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EbrahimLPH13,
author = {Ali Ebrahim and
Joshua A. Lerman and
Bernhard {\O}. Palsson and
Daniel R. Hyduke},
title = {COBRApy: COnstraints-Based Reconstruction and Analysis for Python},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {74},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-74},
doi = {10.1186/1752-0509-7-74},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/EbrahimLPH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ErgulerPD13,
author = {Kamil Erguler and
Myrtani Pieri and
Constantinos Deltas},
title = {A mathematical model of the unfolded protein stress response reveals
the decision mechanism for recovery, adaptation and apoptosis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {16},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-16},
doi = {10.1186/1752-0509-7-16},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ErgulerPD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FazekasKTMPDZSLFVCK13,
author = {D{\'{a}}vid Fazekas and
Mih{\'{a}}ly Koltai and
D{\'{e}}nes T{\"{u}}rei and
Dezs{\"{o}} M{\'{o}}dos and
M{\'{a}}t{\'{e}} P{\'{a}}lfy and
Zolt{\'{a}}n D{\'{u}}l and
Lilian Zs{\'{a}}kai and
M{\'{a}}t{\'{e}} Szalay{-}Beko and
Katalin Lenti and
Ill{\'{e}}s J. Farkas and
Tibor Vellai and
Peter Csermely and
Tam{\'{a}}s Korcsm{\'{a}}ros},
title = {SignaLink 2 - a signaling pathway resource with multi-layered regulatory
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-7},
doi = {10.1186/1752-0509-7-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FazekasKTMPDZSLFVCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FeltusFGS13,
author = {F. Alex Feltus and
Stephen P. Ficklin and
Scott M. Gibson and
Melissa C. Smith},
title = {Maximizing capture of gene co-expression relationships through pre-clustering
of input expression samples: an Arabidopsis case study},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {44},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-44},
doi = {10.1186/1752-0509-7-44},
timestamp = {Wed, 05 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FeltusFGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FlottmannKKK13,
author = {Max Fl{\"{o}}ttmann and
Falko Krause and
Edda Klipp and
Marcus Krantz},
title = {Reaction-contingency based bipartite Boolean modelling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {58},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-58},
doi = {10.1186/1752-0509-7-58},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FlottmannKKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Freyre-GonzalezMMMPG13,
author = {Julio A. Freyre{-}Gonz{\'{a}}lez and
Alejandra M. Manjarrez{-}Casas and
Enrique Merino and
Mario Martinez{-}Nu{\~{n}}ez and
Ernesto P{\'{e}}rez{-}Rueda and
Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os},
title = {Lessons from the modular organization of the transcriptional regulatory
network of Bacillus subtilis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {127},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-127},
doi = {10.1186/1752-0509-7-127},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Freyre-GonzalezMMMPG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GathererG13,
author = {Derek Gatherer and
Vashti Galpin},
title = {Rosen's (M, {R)} system in process algebra},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {128},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-128},
doi = {10.1186/1752-0509-7-128},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GathererG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Gelius-DietrichDFL13,
author = {Gabriel Gelius{-}Dietrich and
Abdelmoneim Amer Desouki and
Claus Fritzemeier and
Martin J. Lercher},
title = {sybil - Efficient constraint-based modelling in {R}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {125},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-125},
doi = {10.1186/1752-0509-7-125},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Gelius-DietrichDFL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhersiS13,
author = {Dario Ghersi and
Mona Singh},
title = {Disentangling function from topology to infer the network properties
of disease genes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {5},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-5},
doi = {10.1186/1752-0509-7-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhersiS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhoshBMAC13,
author = {Soma Ghosh and
Priyanka Baloni and
Sumanta Mukherjee and
Praveen Anand and
Nagasuma R. Chandra},
title = {A multi-level multi-scale approach to study essential genes in Mycobacterium
tuberculosis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {132},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-132},
doi = {10.1186/1752-0509-7-132},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhoshBMAC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GonzalesKSM13,
author = {Kevin Gonzales and
{\"{O}}m{\"{u}}r Kayik{\c{c}}i and
David G. Schaeffer and
Paul M. Magwene},
title = {Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces
cerevisiae cAMP-PKA pathway},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {40},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-40},
doi = {10.1186/1752-0509-7-40},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GonzalesKSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Greenfest-AllenMPS13,
author = {Emily Greenfest{-}Allen and
Jeffrey Malik and
James Palis and
Christian J. Stoeckert Jr.},
title = {Stat and interferon genes identified by network analysis differentially
regulate primitive and definitive erythropoiesis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {38},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-38},
doi = {10.1186/1752-0509-7-38},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Greenfest-AllenMPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Guillen-GosalbezMASJ13,
author = {Gonzalo Guill{\'{e}}n{-}Gos{\'{a}}lbez and
Antoni Mir{\'{o}} and
Rui Alves and
Albert Sorribas and
Laureano Jim{\'{e}}nez},
title = {Identification of regulatory structure and kinetic parameters of biochemical
networks via mixed-integer dynamic optimization},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {113},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-113},
doi = {10.1186/1752-0509-7-113},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Guillen-GosalbezMASJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeFW13,
author = {Fei He and
Vincent Fromion and
Hans V. Westerhoff},
title = {(Im)Perfect robustness and adaptation of metabolic networks subject
to metabolic and gene-expression regulation: marrying control engineering
with metabolic control analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {131},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-131},
doi = {10.1186/1752-0509-7-131},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeFW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HettlingAHBGB13,
author = {Hannes Hettling and
David J. C. Alders and
Jaap Heringa and
Thomas W. Binsl and
A. B. Johan Groeneveld and
Johannes H. G. M. van Beek},
title = {Computational estimation of tricarboxylic acid cycle fluxes using
noisy {NMR} data from cardiac biopsies},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {82},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-82},
doi = {10.1186/1752-0509-7-82},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HettlingAHBGB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HockNHWLTWPT13,
author = {Sabrina Hock and
Yen{-}Kar Ng and
Jan Hasenauer and
Dominik M. Wittmann and
Dominik Lutter and
Dietrich Tr{\"{u}}mbach and
Wolfgang Wurst and
Nilima Prakash and
Fabian J. Theis},
title = {Sharpening of expression domains induced by transcription and microRNA
regulation within a spatio-temporal model of mid-hindbrain boundary
formation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {48},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-48},
doi = {10.1186/1752-0509-7-48},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HockNHWLTWPT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoffmannS13,
author = {Max Hoffmann and
Ulrich S. Schwarz},
title = {A kinetic model for RNA-interference of focal adhesions},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-2},
doi = {10.1186/1752-0509-7-2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoffmannS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HusiSDMVOM13,
author = {Holger Husi and
Maria Sanchez{-}Ni{\~{n}}o and
Christian Delles and
William Mullen and
Antonia Vlahou and
Alberto Ortiz Arduan and
Harald Mischak},
title = {A combinatorial approach of Proteomics and Systems Biology in unravelling
the mechanisms of acute kidney injury {(AKI):} involvement of {NMDA}
receptor {GRIN1} in murine {AKI}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {110},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-110},
doi = {10.1186/1752-0509-7-110},
timestamp = {Tue, 22 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/HusiSDMVOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IberG13,
author = {Dagmar Iber and
Christian Geyter},
title = {Computational modelling of bovine ovarian follicle development},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {60},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-60},
doi = {10.1186/1752-0509-7-60},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IberG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ImamND13,
author = {Saheed Imam and
Daniel R. Noguera and
Timothy J. Donohue},
title = {Global insights into energetic and metabolic networks in Rhodobacter
sphaeroides},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {89},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-89},
doi = {10.1186/1752-0509-7-89},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ImamND13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IorioSB13,
author = {Francesco Iorio and
Julio Saez{-}Rodriguez and
Diego di Bernardo},
title = {Network based elucidation of drug response: from modulators to targets},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {139},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-139},
doi = {10.1186/1752-0509-7-139},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/IorioSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JinZ13,
author = {Suoqin Jin and
Xiufen Zou},
title = {Construction of the influenza {A} virus infection-induced cell-specific
inflammatory regulatory network based on mutual information and optimization},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {105},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-105},
doi = {10.1186/1752-0509-7-105},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JinZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JohnD13,
author = {Peter C. St. John and
Francis J. Doyle},
title = {Estimating confidence intervals in predicted responses for oscillatory
biological models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {71},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-71},
doi = {10.1186/1752-0509-7-71},
timestamp = {Fri, 07 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JohnD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JooPF13,
author = {Jaewook Joo and
Steven J. Plimpton and
Jean{-}Loup Faulon},
title = {Statistical ensemble analysis for simulating extrinsic noise-driven
response in NF-{\(\kappa\)}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {45},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-45},
doi = {10.1186/1752-0509-7-45},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JooPF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JordaSCPHGFAW13,
author = {Joel Jord{\`{a}} and
Camilo Suarez and
Marc Carnicer and
Angela ten Pierick and
Joseph J. Heijnen and
Walter M. van Gulik and
Pau Ferrer and
Joan Albiol and
Aljoscha Wahl},
title = {Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics
and instationary \({}^{\mbox{13}}\)C flux analysis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {17},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-17},
doi = {10.1186/1752-0509-7-17},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JordaSCPHGFAW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KahramanogullariL13,
author = {Ozan Kahramanogullari and
James F. Lynch},
title = {Stochastic flux analysis of chemical reaction networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {133},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-133},
doi = {10.1186/1752-0509-7-133},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KahramanogullariL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KellerDTFZARNHPZD13,
author = {Roland Keller and
Alexander D{\"{o}}rr and
Akito Tabira and
Akira Funahashi and
Michael J. Ziller and
Richard R. Adams and
Nicolas Rodriguez and
Nicolas Le Nov{\`{e}}re and
Noriko Hiroi and
Hannes Planatscher and
Andreas Zell and
Andreas Dr{\"{a}}ger},
title = {The systems biology simulation core algorithm},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {55},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-55},
doi = {10.1186/1752-0509-7-55},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KellerDTFZARNHPZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimHZ13,
author = {Soo{-}Jin Kim and
JungWoo Ha and
Byoung{-}Tak Zhang},
title = {Constructing higher-order miRNA-mRNA interaction networks in prostate
cancer via hypergraph-based learning},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {47},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-47},
doi = {10.1186/1752-0509-7-47},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KimHZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KlapaTTTM13,
author = {Maria I. Klapa and
Kalliopi Tsafou and
Evangelos Theodoridis and
Athanasios K. Tsakalidis and
Nicholas K. Moschonas},
title = {Reconstruction of the experimentally supported human protein interactome:
what can we learn?},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {96},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-96},
doi = {10.1186/1752-0509-7-96},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KlapaTTTM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KnupferBDN13,
author = {Christian Kn{\"{u}}pfer and
Clemens Beckstein and
Peter Dittrich and
Nicolas Le Nov{\`{e}}re},
title = {Structure, function, and behaviour of computational models in systems
biology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {43},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-43},
doi = {10.1186/1752-0509-7-43},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KnupferBDN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KotzeASADWG13,
author = {Helen L. Kotze and
Emily G. Armitage and
Kieran J. Sharkey and
James William Allwood and
Warwick B. Dunn and
Kaye J. Williams and
Royston Goodacre},
title = {A novel untargeted metabolomics correlation-based network analysis
incorporating human metabolic reconstructions},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {107},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-107},
doi = {10.1186/1752-0509-7-107},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KotzeASADWG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrengelHTAJ13,
author = {Annette Krengel and
Jan Hauth and
Marja{-}Riitta Taskinen and
Martin Adiels and
Mats Jirstrand},
title = {A continuous-time adaptive particle filter for estimations under measurement
time uncertainties with an application to a plasma-leucine mixed effects
model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-8},
doi = {10.1186/1752-0509-7-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KrengelHTAJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KrinnerRLS13,
author = {Axel Krinner and
Ingo Roeder and
Markus Loeffler and
Markus Scholz},
title = {Merging concepts - coupling an agent-based model of hematopoietic
stem cells with an {ODE} model of granulopoiesis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {117},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-117},
doi = {10.1186/1752-0509-7-117},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KrinnerRLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KumarBR13,
author = {Gaurav Kumar and
Edmond J. Breen and
Shoba Ranganathan},
title = {Identification of ovarian cancer associated genes using an integrated
approach in a Boolean framework},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {12},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-12},
doi = {10.1186/1752-0509-7-12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KumarBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KuoTT13,
author = {Tien{-}Chueh Kuo and
Tze{-}Feng Tian and
Yufeng Jane Tseng},
title = {3Omics: a web-based systems biology tool for analysis, integration
and visualization of human transcriptomic, proteomic and metabolomic
data},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {64},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-64},
doi = {10.1186/1752-0509-7-64},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KuoTT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KupersteinCPVCBZ13,
author = {Inna Kuperstein and
David P. A. Cohen and
Stuart Pook and
Eric Viara and
Laurence Calzone and
Emmanuel Barillot and
Andrei Yu. Zinovyev},
title = {NaviCell: a web-based environment for navigation, curation and maintenance
of large molecular interaction maps},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {100},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-100},
doi = {10.1186/1752-0509-7-100},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KupersteinCPVCBZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KutumovaZSK13,
author = {Elena Kutumova and
Andrei Yu. Zinovyev and
Ruslan N. Sharipov and
Fedor A. Kolpakov},
title = {Model composition through model reduction: a combined model of {CD95}
and NF-{\(\kappa\)}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {13},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-13},
doi = {10.1186/1752-0509-7-13},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/KutumovaZSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LasherRM13,
author = {Christopher D. Lasher and
Padmavathy Rajagopalan and
T. M. Murali},
title = {Summarizing cellular responses as biological process networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {68},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-68},
doi = {10.1186/1752-0509-7-68},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LasherRM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LawlerHBC13,
author = {Katherine Lawler and
Kim E. Hammond{-}Kosack and
Alvis Brazma and
Richard M. R. Coulson},
title = {Genomic clustering and co-regulation of transcriptional networks in
the pathogenic fungus Fusarium graminearum},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {52},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-52},
doi = {10.1186/1752-0509-7-52},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LawlerHBC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeHLCCYHLXC13,
author = {Yi{-}Ying Lee and
Chih{-}Yuan Hsu and
Ling{-}Jiun Lin and
Chih{-}Chun Chang and
Hsiao{-}Chun Cheng and
Tsung{-}Hsien Yeh and
Rei{-}Hsing Hu and
Che Lin and
Zhen Xie and
Bor{-}Sen Chen},
title = {Systematic design methodology for robust genetic transistors based
on {I/O} specifications via promoter-RBS libraries},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {109},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-109},
doi = {10.1186/1752-0509-7-109},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeHLCCYHLXC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeonMP13,
author = {Miguel Ponce de Leon and
Francisco Montero and
Juli Peret{\'{o}}},
title = {Solving gap metabolites and blocked reactions in genome-scale models:
application to the metabolic network of Blattabacterium cuenoti},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {114},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-114},
doi = {10.1186/1752-0509-7-114},
timestamp = {Mon, 25 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeonMP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiHZLW13,
author = {Pengping Li and
Xu Hua and
Zhen Zhang and
Jie Li and
Jin Wang},
title = {Characterization of regulatory features of housekeeping and tissue-specific
regulators within tissue regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {112},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-112},
doi = {10.1186/1752-0509-7-112},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiHZLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLZXLZSQZCX13,
author = {Ke{-}ning Li and
Zi{-}hui Li and
Ning Zhao and
Yaoqun Xu and
Yongjing Liu and
Yuanshuai Zhou and
Desi Shang and
Fujun Qiu and
Rui Zhang and
Zhi{-}qiang Chang and
Yan Xu},
title = {Functional analysis of microRNA and transcription factor synergistic
regulatory network based on identifying regulatory motifs in non-small
cell lung cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {122},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-122},
doi = {10.1186/1752-0509-7-122},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLZXLZSQZCX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiV13,
author = {Pu Li and
Quoc Dong Vu},
title = {Identification of parameter correlations for parameter estimation
in dynamic biological models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {91},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-91},
doi = {10.1186/1752-0509-7-91},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiangZSGZ13,
author = {Shide Liang and
Dandan Zheng and
Daron M. Standley and
Huarong Guo and
Chi Zhang},
title = {A novel function prediction approach using protein overlap networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {61},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-61},
doi = {10.1186/1752-0509-7-61},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiangZSGZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiebalMMLW13,
author = {Ulf W. Liebal and
Thomas Millat and
Jon Marles{-}Wright and
Richard J. Lewis and
Olaf Wolkenhauer},
title = {Simulations of stressosome activation emphasize allosteric interactions
between RsbR and RsbT},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-3},
doi = {10.1186/1752-0509-7-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiebalMMLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuDCN13,
author = {Yuanhua Liu and
Valentina Devescovi and
Suning Chen and
Christine Nardini},
title = {Multilevel omic data integration in cancer cell lines: advanced annotation
and emergent properties},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {14},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-14},
doi = {10.1186/1752-0509-7-14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuDCN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MadarDBZPA13,
author = {Daniel Madar and
Erez Dekel and
Anat Bren and
Anat Zimmer and
Ziv Porat and
Uri Alon},
title = {Promoter activity dynamics in the lag phase of Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {136},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-136},
doi = {10.1186/1752-0509-7-136},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MadarDBZPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarchisioCWS13,
author = {Mario A. Marchisio and
Moreno Colaiacovo and
Ellis Whitehead and
J{\"{o}}rg Stelling},
title = {Modular, rule-based modeling for the design of eukaryotic synthetic
gene circuits},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {42},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-42},
doi = {10.1186/1752-0509-7-42},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MarchisioCWS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Martinez-PasamarAMMMGV13,
author = {Sara Martinez{-}Pasamar and
Elena Abad and
Beatriz Moreno and
Nieves V{\'{e}}lez de Mendiz{\'{a}}bal and
Ivan Martinez{-}Forero and
Jordi Garc{\'{\i}}a{-}Ojalvo and
Pablo Villoslada},
title = {Dynamic cross-regulation of antigen-specific effector and regulatory
{T} cell subpopulations and microglia in brain autoimmunity},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {34},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-34},
doi = {10.1186/1752-0509-7-34},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-PasamarAMMMGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MassucciDGMCMM13,
author = {Francesco Alessandro Massucci and
Mauro DiNuzzo and
Federico Giove and
Bruno Maraviglia and
Isaac P{\'{e}}rez Castillo and
Enzo Marinari and
Andrea De Martino},
title = {Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric
modeling perspective},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {103},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-103},
doi = {10.1186/1752-0509-7-103},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MassucciDGMCMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MatsuokaMKENHGSLWWFKK13,
author = {Yukiko Matsuoka and
Hiromi Matsumae and
Manami Katoh and
Amie J. Eisfeld and
Gabriele Neumann and
Takeshi Hase and
Samik Ghosh and
Jason E. Shoemaker and
Tiago J. S. Lopes and
Tokiko Watanabe and
Shinji Watanabe and
Satoshi Fukuyama and
Hiroaki Kitano and
Yoshihiro Kawaoka},
title = {A comprehensive map of the influenza {A} virus replication cycle},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {97},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-97},
doi = {10.1186/1752-0509-7-97},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MatsuokaMKENHGSLWWFKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MayburdB13,
author = {Anatoly L. Mayburd and
Ancha V. Baranova},
title = {Knowledge-based compact disease models identify new molecular players
contributing to early-stage Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {121},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-121},
doi = {10.1186/1752-0509-7-121},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MayburdB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MisraS13,
author = {Ashish Misra and
Ganesh Sriram},
title = {Network component analysis provides quantitative insights on an Arabidopsis
transcription factor-gene regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {126},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-126},
doi = {10.1186/1752-0509-7-126},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MisraS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MohammadiSG13,
author = {Shahin Mohammadi and
Shankar Subramaniam and
Ananth Grama},
title = {Inferring the effective TOR-dependent network: a computational study
in yeast},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {84},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-84},
doi = {10.1186/1752-0509-7-84},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MuellerBPM13,
author = {Thomas J. Mueller and
Bertram M. Berla and
Himadri B. Pakrasi and
Costas D. Maranas},
title = {Rapid construction of metabolic models for a family of Cyanobacteria
using a multiple source annotation workflow},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {142},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-142},
doi = {10.1186/1752-0509-7-142},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MuellerBPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NieY13,
author = {Yaling Nie and
Jingkai Yu},
title = {Mining breast cancer genes with a network based noise-tolerant approach},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {49},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-49},
doi = {10.1186/1752-0509-7-49},
timestamp = {Wed, 19 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NieY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NilufarMLP13,
author = {Sharmin Nilufar and
Anne Morrow and
Jonathan Lee and
Theodore J. Perkins},
title = {FiloDetect: automatic detection of filopodia from fluorescence microscopy
images},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {66},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-66},
doi = {10.1186/1752-0509-7-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NilufarMLP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NishioOIYUMT13,
author = {Yousuke Nishio and
Soichi Ogishima and
Masao Ichikawa and
Yohei Yamada and
Yoshihiro Usuda and
Tadashi Masuda and
Hiroshi Tanaka},
title = {Analysis of l-glutamic acid fermentation by using a dynamic metabolic
simulation model of Escherichia coli},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {92},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-92},
doi = {10.1186/1752-0509-7-92},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NishioOIYUMT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NohSSHKJCKC13,
author = {Kyungchul Noh and
Kyung Soon Shin and
Dongkwan Shin and
Jae Yeon Hwang and
June Sic Kim and
Joon Hwan Jang and
Chun Kee Chung and
Jun Soo Kwon and
Kwang{-}Hyun Cho},
title = {Impaired coupling of local and global functional feedbacks underlies
abnormal synchronization and negative symptoms of schizophrenia},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {30},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-30},
doi = {10.1186/1752-0509-7-30},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NohSSHKJCKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OguzLCWBT13,
author = {Cihan Oguz and
Teeraphan Laomettachit and
Katherine C. Chen and
Layne T. Watson and
William T. Baumann and
John J. Tyson},
title = {Optimization and model reduction in the high dimensional parameter
space of a budding yeast cell cycle model},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {53},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-53},
doi = {10.1186/1752-0509-7-53},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OguzLCWBT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OliveiraBBFIZ13,
author = {Juliana Oliveira and
Anderson de Brito and
Carla Braconi and
Caio de Melo Freire and
Atila Iamarino and
Paolo de Andrade Zanotto},
title = {Modularity and evolutionary constraints in a baculovirus gene regulatory
network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {87},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-87},
doi = {10.1186/1752-0509-7-87},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/OliveiraBBFIZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OoiM13,
author = {Hsu Kiang Ooi and
Lan Ma},
title = {Modeling heterogeneous responsiveness of intrinsic apoptosis pathway},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {65},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-65},
doi = {10.1186/1752-0509-7-65},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OoiM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OsterlundNBN13,
author = {Tobias {\"{O}}sterlund and
Intawat Nookaew and
Sergio Bordel and
Jens Nielsen},
title = {Mapping condition-dependent regulation of metabolism in yeast through
genome-scale modeling},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {36},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-36},
doi = {10.1186/1752-0509-7-36},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OsterlundNBN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PalssonHBZJOSPV13,
author = {Sirus Palsson and
Timothy P. Hickling and
Erica L. Bradshaw{-}Pierce and
Michael Zager and
Karin Jooss and
Peter O'Brien and
Mary E. Spilker and
Bernhard {\O}. Palsson and
Paolo Vicini},
title = {The development of a fully-integrated immune response model {(FIRM)}
simulator of the immune response through integration of multiple subset
models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {95},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-95},
doi = {10.1186/1752-0509-7-95},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PalssonHBZJOSPV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PertsovskayaADGV13,
author = {Inna Pertsovskaya and
Elena Abad and
N{\'{u}}ria Domedel{-}Puig and
Jordi Garc{\'{\i}}a{-}Ojalvo and
Pablo Villoslada},
title = {Transient oscillatory dynamics of interferon beta signaling in macrophages},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {59},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-59},
doi = {10.1186/1752-0509-7-59},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PertsovskayaADGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeyTCP13,
author = {Jon Pey and
Luis Tobalina and
Joaqu{\'{\i}}n Prada J. de Cisneros and
Francisco J. Planes},
title = {A network-based approach for predicting key enzymes explaining metabolite
abundance alterations in a disease phenotype},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {62},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-62},
doi = {10.1186/1752-0509-7-62},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeyTCP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PeyVRBP13,
author = {Jon Pey and
Kaspar Valgepea and
Angel Rubio and
John E. Beasley and
Francisco J. Planes},
title = {Integrating gene and protein expression data with genome-scale metabolic
networks to infer functional pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {134},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-134},
doi = {10.1186/1752-0509-7-134},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PeyVRBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PinnaHFFK13,
author = {Andrea Pinna and
Sandra Heise and
Robert J. Flassig and
Alberto de la Fuente and
Steffen Klamt},
title = {Reconstruction of large-scale regulatory networks based on perturbation
graphs and transitive reduction: improved methods and their evaluation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {73},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-73},
doi = {10.1186/1752-0509-7-73},
timestamp = {Mon, 08 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PinnaHFFK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PokhilkoMM13,
author = {Alexandra V. Pokhilko and
Paloma Mas and
Andrew J. Millar},
title = {Modelling the widespread effects of {TOC1} signalling on the plant
circadian clock and its outputs},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {23},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-23},
doi = {10.1186/1752-0509-7-23},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PokhilkoMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PradhanDP13,
author = {Meeta Pradhan and
Akshay Desai and
Mathew J. Palakal},
title = {Systems biology approach to stage-wise characterization of epigenetic
genes in lung adenocarcinoma},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {141},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-141},
doi = {10.1186/1752-0509-7-141},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PradhanDP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanLFLXLSCJLL13,
author = {Jihua Ran and
Hui Li and
Jianfeng Fu and
Ling Liu and
Yanchao Xing and
Xiumei Li and
Hongming Shen and
Yan Chen and
Xiaofang Jiang and
Yan Li and
Huiwu Li},
title = {Construction and analysis of the protein-protein interaction network
related to essential hypertension},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {32},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-32},
doi = {10.1186/1752-0509-7-32},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RanLFLXLSCJLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RanolaLLH13,
author = {John M. O. Ranola and
Peter Langfelder and
Kenneth Lange and
Steve Horvath},
title = {Cluster and propensity based approximation of a network},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {21},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-21},
doi = {10.1186/1752-0509-7-21},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RanolaLLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RauJN13,
author = {Andrea Rau and
Florence Jaffr{\'{e}}zic and
Gr{\'{e}}gory Nuel},
title = {Joint estimation of causal effects from observational and intervention
gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {111},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-111},
doi = {10.1186/1752-0509-7-111},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RauJN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RaySY13,
author = {Debjit Ray and
Yongchun Su and
Ping Ye},
title = {Dynamic modeling of yeast meiotic initiation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {37},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-37},
doi = {10.1186/1752-0509-7-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RaySY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RiemerRS13,
author = {S. Alexander Riemer and
Rene Rex and
Dietmar Schomburg},
title = {A metabolite-centric view on flux distributions in genome-scale metabolic
models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {33},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-33},
doi = {10.1186/1752-0509-7-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RiemerRS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Rodriguez-FernandezRKB13,
author = {Maria Rodriguez{-}Fernandez and
Markus Rehberg and
Andreas Kremling and
Julio R. Banga},
title = {Simultaneous model discrimination and parameter estimation in dynamic
models of cellular systems},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {76},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-76},
doi = {10.1186/1752-0509-7-76},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Rodriguez-FernandezRKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SaithongRKCSNSMC13,
author = {Treenut Saithong and
Oratai Rongsirikul and
Saowalak Kalapanulak and
Porntip Chiewchankaset and
Wanatsanan Siriwat and
Supatcharee Netrphan and
Malinee Suksangpanomrung and
Asawin Meechai and
Supapon Cheevadhanarak},
title = {Starch biosynthesis in cassava: a genome-based pathway reconstruction
and its exploitation in data integration},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {75},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-75},
doi = {10.1186/1752-0509-7-75},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SaithongRKCSNSMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SalernoCMBA13,
author = {Luca Salerno and
Carlo Cosentino and
Alessio Merola and
Declan G. Bates and
Francesco Amato},
title = {Validation of a model of the {GAL} regulatory system via robustness
analysis of its bistability characteristics},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {39},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-39},
doi = {10.1186/1752-0509-7-39},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SalernoCMBA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Sands13,
author = {Tim Sands},
title = {Annual acknowledgement of reviewers},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {35},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-35},
doi = {10.1186/1752-0509-7-35},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Sands13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SantraKK13,
author = {Tapesh Santra and
Walter Kolch and
Boris N. Kholodenko},
title = {Integrating Bayesian variable selection with Modular Response Analysis
to infer biochemical network topology},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {57},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-57},
doi = {10.1186/1752-0509-7-57},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SantraKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchaadtSHH13,
author = {Nadine S. Schaadt and
Anke Steinbach and
Rolf W. Hartmann and
Volkhard Helms},
title = {Rule-based regulatory and metabolic model for Quorum sensing in P.
aeruginosa},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {81},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-81},
doi = {10.1186/1752-0509-7-81},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchaadtSHH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SenVR13,
author = {Partho Sen and
Henri J. Vial and
Ovidiu Radulescu},
title = {Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi
unravels crucial steps and relative importance of multiple pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {123},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-123},
doi = {10.1186/1752-0509-7-123},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SenVR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShiXZXLWZJGL13,
author = {Hongbo Shi and
Juan Xu and
Guangde Zhang and
Liangde Xu and
Chunquan Li and
Li Wang and
Zheng Zhao and
Wei Jiang and
Zheng Guo and
Xia Li},
title = {Walking the interactome to identify human miRNA-disease associations
through the functional link between miRNA targets and disease genes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {101},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-101},
doi = {10.1186/1752-0509-7-101},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShiXZXLWZJGL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShinCSHS13,
author = {Yong{-}Jun Shin and
Kai{-}Yuan Chen and
Ali H. Sayed and
Brandon Hencey and
Xiling Shen},
title = {Post-translational regulation enables robust p53 regulation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {83},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-83},
doi = {10.1186/1752-0509-7-83},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShinCSHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SimchaYAG13,
author = {David M. Simcha and
Laurent Younes and
Martin J. Aryee and
Donald Geman},
title = {Identification of direction in gene networks from expression and methylation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {118},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-118},
doi = {10.1186/1752-0509-7-118},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SimchaYAG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SlawekA13,
author = {Janusz Slawek and
Tomasz Arodz},
title = {{ENNET:} inferring large gene regulatory networks from expression
data using gradient boosting},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {106},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-106},
doi = {10.1186/1752-0509-7-106},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SlawekA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SmithS13,
author = {Graham R. Smith and
Daryl P. Shanley},
title = {Computational modelling of the regulation of Insulin signalling by
oxidative stress},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {41},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-41},
doi = {10.1186/1752-0509-7-41},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SmithS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SrivastavaHBPA13,
author = {Prashant K. Srivastava and
Richard P. Hull and
Jacques Behmoaras and
Enrico Petretto and
Timothy J. Aitman},
title = {JunD/AP1 regulatory network analysis during macrophage activation
in a rat model of crescentic glomerulonephritis},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {93},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-93},
doi = {10.1186/1752-0509-7-93},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaHBPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StobbeSTRKM13,
author = {Miranda D. Stobbe and
Morris A. Swertz and
Ines Thiele and
Trebor Rengaw and
Antoine H. C. van Kampen and
Perry D. Moerland},
title = {Consensus and conflict cards for metabolic pathway databases},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {50},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-50},
doi = {10.1186/1752-0509-7-50},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/StobbeSTRKM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TabbaaNSHJ13,
author = {Omar P. Tabbaa and
German Nudelman and
Stuart C. Sealfon and
Fernand Hayot and
Ciriyam Jayaprakash},
title = {Noise propagation through extracellular signaling leads to fluctuations
in gene expression},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {94},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-94},
doi = {10.1186/1752-0509-7-94},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TabbaaNSHJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13,
author = {Nicolas Tchitchek and
Amie J. Eisfeld and
Jennifer Tisoncik{-}Go and
Laurence Josset and
Lisa E. Gralinski and
Christophe B{\'{e}}cavin and
Susan C. Tilton and
Bobbie{-}Jo M. Webb{-}Robertson and
Martin T. Ferris and
Allison L. Totura and
Chengjun Li and
Gabriele Neumann and
Thomas O. Metz and
Richard D. Smith and
Katrina M. Waters and
Ralph S. Baric and
Yoshihiro Kawaoka and
Michael G. Katze},
title = {Specific mutations in {H5N1} mainly impact the magnitude and velocity
of the host response in mice},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {69},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-69},
doi = {10.1186/1752-0509-7-69},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TorchalaCKB13,
author = {Mieczyslaw Torchala and
Przemyslaw Chelminiak and
Michal Kurzynski and
Paul A. Bates},
title = {RaTrav: a tool for calculating mean first-passage times on biochemical
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {130},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-130},
doi = {10.1186/1752-0509-7-130},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TorchalaCKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TreloarSHMLMB13,
author = {Katrina K. Treloar and
Matthew J. Simpson and
Parvathi Haridas and
Kerry J. Manton and
David I. Leavesley and
Donald L. S. McElwain and
Ruth E. Baker},
title = {Multiple types of data are required to identify the mechanisms influencing
the spatial expansion of melanoma cell colonies},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {137},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-137},
doi = {10.1186/1752-0509-7-137},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TreloarSHMLMB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TrifonovPFR13,
author = {Vladimir Trifonov and
Laura Pasqualucci and
Riccardo Dalla Favera and
Raul Rabadan},
title = {MutComFocal: an integrative approach to identifying recurrent and
focal genomic alterations in tumor samples},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {25},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-25},
doi = {10.1186/1752-0509-7-25},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPFR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VafaeeRBJ13,
author = {Fatemeh Vafaee and
Daniela Rosu and
Fiona Broackes{-}Carter and
Igor Jurisica},
title = {Novel semantic similarity measure improves an integrative approach
to predicting gene functional associations},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {22},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-22},
doi = {10.1186/1752-0509-7-22},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VafaeeRBJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vazquez13,
author = {Alexei Vazquez},
title = {Optimization of personalized therapies for anticancer treatment},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {31},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-31},
doi = {10.1186/1752-0509-7-31},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Vital-LopezWR13,
author = {Francisco G. Vital{-}Lopez and
Anders Wallqvist and
Jaques Reifman},
title = {Bridging the gap between gene expression and metabolic phenotype via
kinetic models},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {63},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-63},
doi = {10.1186/1752-0509-7-63},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Vital-LopezWR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VogtCS13,
author = {Torsten Vogt and
Tobias Czauderna and
Falk Schreiber},
title = {Translation of {SBGN} maps: Process Description to Activity Flow},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {115},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-115},
doi = {10.1186/1752-0509-7-115},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VogtCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangLCHLCC13,
author = {Yu{-}Chao Wang and
Che Lin and
Ming{-}Ta Chuang and
Wen{-}Ping Hsieh and
Chung{-}Yu Lan and
Yung{-}Jen Chuang and
Bor{-}Sen Chen},
title = {Interspecies protein-protein interaction network construction for
characterization of host-pathogen interactions: a Candida albicans-zebrafish
interaction study},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {79},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-79},
doi = {10.1186/1752-0509-7-79},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangLCHLCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangPXLP13,
author = {Jianxin Wang and
Xiaoqing Peng and
Qianghua Xiao and
Min Li and
Yi Pan},
title = {An effective method for refining predicted protein complexes based
on protein activity and the mechanism of protein complex formation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {28},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-28},
doi = {10.1186/1752-0509-7-28},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangPXLP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangVHPW13,
author = {Qinghua Wang and
Keerthi Venkataramanan and
Hongzhan Huang and
Eleftherios T. Papoutsakis and
Cathy H. Wu},
title = {Transcription factors and genetic circuits orchestrating the complex,
multilayered response of Clostridium acetobutylicum to butanol and
butyrate stress},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {120},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-120},
doi = {10.1186/1752-0509-7-120},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangVHPW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberB13,
author = {Marc Weber and
Javier Buceta},
title = {Dynamics of the quorum sensing switch: stochastic and non-stationary
effects},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {6},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-6},
doi = {10.1186/1752-0509-7-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberHVGZD13,
author = {Michael Weber and
Sebastian Henkel and
Sebastian Vlaic and
Reinhard Guthke and
Everardus J. van Zoelen and
Dominik Driesch},
title = {Inference of dynamical gene-regulatory networks based on time-resolved
multi-stimuli multi-experiment data applying NetGenerator {V2.0}},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-1},
doi = {10.1186/1752-0509-7-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberHVGZD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberSKGZ13,
author = {Michael Weber and
Ana M. Sotoca and
Peter Kupfer and
Reinhard Guthke and
Everardus J. van Zoelen},
title = {Dynamic modelling of microRNA regulation during mesenchymal stem cell
differentiation},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {124},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-124},
doi = {10.1186/1752-0509-7-124},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeberSKGZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Williams-DeVaneRHBHGE13,
author = {ClarLynda R. Williams{-}DeVane and
David M. Reif and
Elaine Cohen Hubal and
Pierre R. Bushel and
Edward E. Hudgens and
Jane E. Gallagher and
Stephen W. Edwards},
title = {Decision tree-based method for integrating gene expression, demographic,
and clinical data to determine disease endotypes},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {119},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-119},
doi = {10.1186/1752-0509-7-119},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/Williams-DeVaneRHBHGE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WinklerF13,
author = {Jessica M. Winkler and
Howard S. Fox},
title = {Transcriptome meta-analysis reveals a central role for sex steroids
in the degeneration of hippocampal neurons in Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {51},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-51},
doi = {10.1186/1752-0509-7-51},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WinklerF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WinterbachMRWR13,
author = {Wynand Winterbach and
Piet Van Mieghem and
Marcel J. T. Reinders and
Huijuan Wang and
Dick de Ridder},
title = {Topology of molecular interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {90},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-90},
doi = {10.1186/1752-0509-7-90},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WinterbachMRWR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WintermuteLS13,
author = {Edwin H. Wintermute and
Tami D. Lieberman and
Pamela A. Silver},
title = {An objective function exploiting suboptimal solutions in metabolic
networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {98},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-98},
doi = {10.1186/1752-0509-7-98},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WintermuteLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WrzodekBRDZ13,
author = {Clemens Wrzodek and
Finja B{\"{u}}chel and
Manuel Ruff and
Andreas Dr{\"{a}}ger and
Andreas Zell},
title = {Precise generation of systems biology models from {KEGG} pathways},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {15},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-15},
doi = {10.1186/1752-0509-7-15},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WrzodekBRDZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangDMHJPD13,
author = {Ruoting Yang and
Bernie J. Daigle Jr. and
Seid Y. Muhie and
Rasha Hammamieh and
Marti Jett and
Linda R. Petzold and
Francis J. Doyle III},
title = {Core modular blood and brain biomarkers in social defeat mouse model
for post traumatic stress disorder},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {80},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-80},
doi = {10.1186/1752-0509-7-80},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangDMHJPD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YinV13,
author = {Weiwei Yin and
Eberhard O. Voit},
title = {Function and design of the Nox1 system in vascular smooth muscle cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {20},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-20},
doi = {10.1186/1752-0509-7-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YinV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousofshahiOLH13,
author = {Mona Yousofshahi and
Michael Orshansky and
Kyongbum Lee and
Soha Hassoun},
title = {Probabilistic strain optimization under constraint uncertainty},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {29},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-29},
doi = {10.1186/1752-0509-7-29},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiOLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YousofshahiUSH13,
author = {Mona Yousofshahi and
Ehsan Ullah and
Russell Stern and
Soha Hassoun},
title = {MC\({}^{\mbox{3}}\): a steady-state model and constraint consistency
checker for biochemical networks},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {129},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-129},
doi = {10.1186/1752-0509-7-129},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiUSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YvertONIFSO13,
author = {Ga{\"{e}}l Yvert and
Shinsuke Ohnuki and
Satoru Nogami and
Yasutaka Imanaga and
Steffen Fehrmann and
Joseph Schacherer and
Yoshikazu Ohya},
title = {Single-cell phenomics reveals intra-species variation of phenotypic
noise in yeast},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {54},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-54},
doi = {10.1186/1752-0509-7-54},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YvertONIFSO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangGS13,
author = {Xia Zhang and
M. Heather West Greenlee and
Jeanne M. Serb},
title = {EnRICH: Extraction and Ranking using Integration and Criteria Heuristics},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {4},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-4},
doi = {10.1186/1752-0509-7-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhouVWWWBO13,
author = {Yi Zhou and
Alexei Vazquez and
Aaron Wise and
Tomoko Warita and
Katsuhiko Warita and
Ziv Bar{-}Joseph and
Zolt{\'{a}}n N. Oltvai},
title = {Carbon catabolite repression correlates with the maintenance of near
invariant molecular crowding in proliferating E. coli cells},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {138},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-138},
doi = {10.1186/1752-0509-7-138},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhouVWWWBO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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