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@article{DBLP:journals/nar/AfganBBBBCCCCEG16,
author = {Enis Afgan and
Dannon Baker and
Marius van den Beek and
Daniel J. Blankenberg and
Dave Bouvier and
Martin Cech and
John Chilton and
Dave Clements and
Nate Coraor and
Carl Eberhard and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Aysam Guerler and
Jennifer Hillman{-}Jackson and
Gregory Von Kuster and
Eric Rasche and
Nicola Soranzo and
Nitesh Turaga and
James Taylor and
Anton Nekrutenko and
Jeremy Goecks},
title = {The Galaxy platform for accessible, reproducible and collaborative
biomedical analyses: 2016 update},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W3--W10},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw343},
doi = {10.1093/NAR/GKW343},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfganBBBBCCCCEG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AgrawalBUSCRG16,
author = {Piyush Agrawal and
Sherry Bhalla and
Salman Sadullah Usmani and
Sandeep Singh and
Kumardeep Chaudhary and
Gajendra P. S. Raghava and
Ankur Gautam},
title = {CPPsite 2.0: a repository of experimentally validated cell-penetrating
peptides},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1098--1103},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1266},
doi = {10.1093/NAR/GKV1266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AgrawalBUSCRG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlbrechtLBL16,
author = {Felipe Albrecht and
Markus List and
Christoph Bock and
Thomas Lengauer},
title = {DeepBlue epigenomic data server: programmatic data retrieval and analysis
of epigenome region sets},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W581--W586},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw211},
doi = {10.1093/NAR/GKW211},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AlbrechtLBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Alonso-BarbaRWM16,
author = {Juan Ignacio Alonso{-}Barba and
Raza{-}Ur Rahman and
Joachim Wittbrodt and
Juan L. Mateo},
title = {{MEPD:} medaka expression pattern database, genes and more},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {819--821},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1029},
doi = {10.1093/NAR/GKV1029},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Alonso-BarbaRWM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Alonso-LopezGLP16,
author = {Diego Alonso{-}L{\'{o}}pez and
Miguel A. Guti{\'{e}}rrez and
Katia P. Lopes and
Carlos Prieto and
Rodrigo Santamar{\'{\i}}a and
Javier De Las Rivas},
title = {{APID} interactomes: providing proteome-based interactomes with controlled
quality for multiple species and derived networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W529--W535},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw363},
doi = {10.1093/NAR/GKW363},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Alonso-LopezGLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlvaNSL16,
author = {Vikram Alva and
Seung{-}Zin Nam and
Johannes S{\"{o}}ding and
Andrei N. Lupas},
title = {The {MPI} bioinformatics Toolkit as an integrative platform for advanced
protein sequence and structure analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W410--W415},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw348},
doi = {10.1093/NAR/GKW348},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AlvaNSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AnDMC16,
author = {Omer An and
Giovanni Marco Dall'Olio and
Thanos P. Mourikis and
Francesca D. Ciccarelli},
title = {{NCG} 5.0: updates of a manually curated repository of cancer genes
and associated properties from cancer mutational screenings},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {992--999},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1123},
doi = {10.1093/NAR/GKV1123},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AnDMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndorfCPGHSBCVS16,
author = {Carson M. Andorf and
Ethalinda K. S. Cannon and
John L. Portwood II and
Jack M. Gardiner and
Lisa C. Harper and
Mary L. Schaeffer and
Bremen L. Braun and
Darwin A. Campbell and
Abhinav G. Vinnakota and
Venktanaga V. Sribalusu and
Miranda Huerta and
Kyoung Tak Cho and
Kokulapalan Wimalanathan and
Jacqueline D. Richter and
Emily D. Mauch and
Bhavani S. Rao and
Scott M. Birkett and
Taner Z. Sen and
Carolyn J. Lawrence{-}Dill},
title = {MaizeGDB update: new tools, data and interface for the maize model
organism database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1195--1201},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1007},
doi = {10.1093/NAR/GKV1007},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndorfCPGHSBCVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Aoki-KinoshitaA16,
author = {Kiyoko F. Aoki{-}Kinoshita and
Sanjay Agravat and
Nobuyuki P. Aoki and
Sena Arpinar and
Richard D. Cummings and
Akihiro Fujita and
Noriaki Fujita and
Gerald M. Hart and
Stuart M. Haslam and
Toshisuke Kawasaki and
Masaaki Matsubara and
Kelley W. Moreman and
Shujiro Okuda and
Michael Pierce and
Ren{\'{e}} Ranzinger and
Toshihide Shikanai and
Daisuke Shinmachi and
Elena Solovieva and
Yoshinori Suzuki and
Shinichiro Tsuchiya and
Issaku Yamada and
William S. York and
Joseph Zaia and
Hisashi Narimatsu},
title = {GlyTouCan 1.0 - The international glycan structure repository},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1237--1242},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1041},
doi = {10.1093/NAR/GKV1041},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Aoki-KinoshitaA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AppasamyHRR16,
author = {Sri Devan Appasamy and
Hazrina Yusof Hamdani and
Effirul Ikhwan Ramlan and
Mohd Firdaus Raih},
title = {InterRNA: a database of base interactions in {RNA} structures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {266--271},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1186},
doi = {10.1093/NAR/GKV1186},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AppasamyHRR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ArndtGMSPLW16,
author = {David Arndt and
Jason R. Grant and
Ana Marcu and
Tanvir Sajed and
Allison Pon and
Yongjie Liang and
David S. Wishart},
title = {{PHASTER:} a better, faster version of the {PHAST} phage search tool},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W16--W21},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw387},
doi = {10.1093/NAR/GKW387},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ArndtGMSPLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AshkenazyAMCMPB16,
author = {Haim Ashkenazy and
Shiran Abadi and
Eric Martz and
Ofer Chay and
Itay Mayrose and
Tal Pupko and
Nir Ben{-}Tal},
title = {ConSurf 2016: an improved methodology to estimate and visualize evolutionary
conservation in macromolecules},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W344--W350},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw408},
doi = {10.1093/NAR/GKW408},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AshkenazyAMCMPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AttrillFGMARMc16,
author = {Helen Attrill and
Kathleen Falls and
Joshua L. Goodman and
Gillian H. Millburn and
Giulia Antonazzo and
Alix J. Rey and
Steven J. Marygold},
title = {FlyBase: establishing a Gene Group resource for \emph{Drosophila melanogaster}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {786--792},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1046},
doi = {10.1093/NAR/GKV1046},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AttrillFGMARMc16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BabickiAMLGMW16,
author = {Sasha Babicki and
David Arndt and
Ana Marcu and
Yongjie Liang and
Jason R. Grant and
Adam Maciejewski and
David S. Wishart},
title = {Heatmapper: web-enabled heat mapping for all},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W147--W153},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw419},
doi = {10.1093/NAR/GKW419},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BabickiAMLGMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BackesKMK16,
author = {Christina Backes and
Qurratulain T. Khaleeq and
Eckart Meese and
Andreas Keller},
title = {miEAA: microRNA enrichment analysis and annotation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W110--W116},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw345},
doi = {10.1093/NAR/GKW345},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BackesKMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaggerSSLPSWRP16,
author = {Frederik Otzen Bagger and
Damir Sasivarevic and
Sina Hadi Sohi and
Linea G{\o}ricke Laursen and
Sachin Pundhir and
Casper Kaae S{\o}nderby and
Ole Winther and
Nicolas Rapin and
Bo T. Porse},
title = {BloodSpot: a database of gene expression profiles and transcriptional
programs for healthy and malignant haematopoiesis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {917--924},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1101},
doi = {10.1093/NAR/GKV1101},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaggerSSLPSWRP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BakerBRLC16,
author = {Erich J. Baker and
Jason A. Bubier and
Timothy Reynolds and
Michael A. Langston and
Elissa J. Chesler},
title = {GeneWeaver: data driven alignment of cross-species genomics in biology
and disease},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {555--559},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1329},
doi = {10.1093/NAR/GKV1329},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BakerBRLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BendlSSVMBD16,
author = {Jaroslav Bendl and
Jan Stourac and
Eva Sebestova and
Ondrej Vavra and
Milos Musil and
Jan Brezovsky and
Jir{\'{\i}} Damborsk{\'{y}}},
title = {HotSpot Wizard 2.0: automated design of site-specific mutations and
smart libraries in protein engineering},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W479--W487},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw416},
doi = {10.1093/NAR/GKW416},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BendlSSVMBD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Benson16,
author = {Gary Benson},
title = {Editorial: Nucleic Acids Research annual Web Server Issue in 2016},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W1--W2},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw460},
doi = {10.1093/NAR/GKW460},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Benson16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BhattacharyaC16,
author = {Anindya Bhattacharya and
Yan Cui},
title = {SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA
interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1005--1010},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1220},
doi = {10.1093/NAR/GKV1220},
timestamp = {Mon, 25 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BhattacharyaC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BhattacharyaNCC16,
author = {Debswapna Bhattacharya and
Jackson Nowotny and
Renzhi Cao and
Jianlin Cheng},
title = {3Drefine: an interactive web server for efficient protein structure
refinement},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W406--W409},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw336},
doi = {10.1093/NAR/GKW336},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BhattacharyaNCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlomKSJBEG16,
author = {Jochen Blom and
Julian Kreis and
Sebastian Sp{\"{a}}nig and
Tobias Juhre and
Claire Bertelli and
Corinna Ernst and
Alexander Goesmann},
title = {{EDGAR} 2.0: an enhanced software platform for comparative gene content
analyses},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W22--W28},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw255},
doi = {10.1093/NAR/GKW255},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlomKSJBEG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoucheLTP16,
author = {Fr{\'{e}}d{\'{e}}ric Bouch{\'{e}} and
Guillaume Lobet and
Pierre Tocquin and
Claire P{\'{e}}rilleux},
title = {{FLOR-ID:} an interactive database of flowering-time gene networks
in \emph{Arabidopsis thaliana}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1167--1171},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1054},
doi = {10.1093/NAR/GKV1054},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BoucheLTP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BouyioukosBEK16,
author = {Costas Bouyioukos and
Fran{\c{c}}ois Bucchini and
Mohamed Elati and
Fran{\c{c}}ois K{\'{e}}p{\`{e}}s},
title = {{GREAT:} a web portal for Genome Regulatory Architecture Tools},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W77--W82},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw384},
doi = {10.1093/NAR/GKW384},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BouyioukosBEK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrandlMVLHR16,
author = {Holger Brandl and
HongKee Moon and
Miquel Vila{-}Farr{\'{e}} and
Shang{-}Yun Liu and
Ian Henry and
Jochen C. Rink},
title = {PlanMine - a mineable resource of planarian biology and biodiversity},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {764--773},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1148},
doi = {10.1093/NAR/GKV1148},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BrandlMVLHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrozovicMDDMSPL16,
author = {Matija Brozovic and
Cyril Martin and
Christelle Dantec and
Delphine Dauga and
Micka{\"{e}}l Mendez and
Paul Simion and
Madeline Percher and
Baptiste Laporte and
C{\'{e}}line Scornavacca and
Anna Di Gregorio and
Shigeki Fujiwara and
Mathieu Gineste and
Elijah K. Lowe and
Jacques Piette and
Claudia Racioppi and
Filomena Ristoratore and
Yasunori Sasakura and
Naohito Takatori and
C. Titus Brown and
Fr{\'{e}}d{\'{e}}ric Delsuc and
Emmanuel J. P. Douzery and
Carmela Gissi and
Alex McDougall and
Hiroki Nishida and
Hitoshi Sawada and
Billie J. Swalla and
Hitoyoshi Yasuo and
Patrick Lemaire},
title = {{ANISEED} 2015: a digital framework for the comparative developmental
biology of ascidians},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {808--818},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv966},
doi = {10.1093/NAR/GKV966},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BrozovicMDDMSPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultEBKRG16,
author = {Carol J. Bult and
Janan T. Eppig and
Judith A. Blake and
James A. Kadin and
Joel E. Richardson},
title = {Mouse genome database 2016},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {840--847},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1211},
doi = {10.1093/NAR/GKV1211},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultEBKRG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BurnsKLCJL16,
author = {Jonathan Burns and
Denys Kukushkin and
Kelsi Lindblad and
Xiao Chen and
Natasa Jonoska and
Laura F. Landweber},
title = {{\textless}mds{\_}ies{\_}db{\textgreater}: a database of ciliate genome
rearrangements},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {703--709},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1190},
doi = {10.1093/NAR/GKV1190},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurnsKLCJL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CalvoCM16,
author = {Sarah E. Calvo and
Karl R. Clauser and
Vamsi K. Mootha},
title = {MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1251--1257},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1003},
doi = {10.1093/NAR/GKV1003},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CalvoCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiBFFFKKKLMO16,
author = {Ron Caspi and
Richard Billington and
Luciana Ferrer and
Hartmut Foerster and
Carol A. Fulcher and
Ingrid M. Keseler and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Lukas A. Mueller and
Quang Ong and
Suzanne M. Paley and
Pallavi Subhraveti and
Daniel S. Weaver and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes and the BioCyc
collection of pathway/genome databases},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {471--480},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1164},
doi = {10.1093/NAR/GKV1164},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiBFFFKKKLMO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CernyBS16,
author = {Jir{\'{\i}} Cern{\'{y}} and
Paul{\'{\i}}na Boz{\'{\i}}kov{\'{a}} and
Bohdan Schneider},
title = {{DNATCO:} assignment of {DNA} conformers at dnatco.org},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W284--W287},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw381},
doi = {10.1093/NAR/GKW381},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CernyBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChakrabartyP16,
author = {Broto Chakrabarty and
Nita Parekh},
title = {{NAPS:} Network Analysis of Protein Structures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W375--W382},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw383},
doi = {10.1093/NAR/GKW383},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChakrabartyP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChanL16,
author = {Patricia P. Chan and
Todd M. Lowe},
title = {GtRNAdb 2.0: an expanded database of transfer {RNA} genes identified
in complete and draft genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {184--189},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1309},
doi = {10.1093/NAR/GKV1309},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChanL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChangHRAKRS16,
author = {Yi{-}Chien Chang and
Zhenjun Hu and
John Rachlin and
Brian P. Anton and
Simon Kasif and
Richard J. Roberts and
Martin Steffen},
title = {{COMBREX-DB:} an experiment centered database of protein function:
knowledge, predictions and knowledge gaps},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {330--335},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1324},
doi = {10.1093/NAR/GKV1324},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChangHRAKRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenZLYJ16,
author = {Lihong Chen and
Dandan Zheng and
Bo Liu and
Jian Yang and
Qi Jin},
title = {{VFDB} 2016: hierarchical and refined dataset for big data analysis
- 10 years on},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {694--697},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1239},
doi = {10.1093/NAR/GKV1239},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenZLYJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChisangaKPAKBMS16,
author = {David Chisanga and
Shivakumar Keerthikumar and
Mohashin Pathan and
Dinuka Ariyaratne and
Hina Kalra and
Stephanie Boukouris and
Nidhi Abraham Mathew and
Haidar Al Saffar and
Lahiru Gangoda and
Ching{-}Seng Ang and
Oliver M. Sieber and
John M. Mariadason and
Ramanuj Dasgupta and
Naveen K. Chilamkurti and
Suresh Mathivanan},
title = {Colorectal cancer atlas: An integrative resource for genomic and proteomic
annotations from colorectal cancer cell lines and tissues},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {969--974},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1097},
doi = {10.1093/NAR/GKV1097},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChisangaKPAKBMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChorevGC16,
author = {Michal Chorev and
Lotem Guy and
Liran Carmel},
title = {JuncDB: an exon-exon junction database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {101--109},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1142},
doi = {10.1093/NAR/GKV1142},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChorevGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChouCSHLLYHWTTH16,
author = {Chih{-}Hung Chou and
Nai{-}Wen Chang and
Sirjana Shrestha and
Sheng{-}Da Hsu and
Yu{-}Ling Lin and
Wei{-}Hsiang Lee and
Chi{-}Dung Yang and
Hsiao{-}Chin Hong and
Ting{-}Yen Wei and
Siang{-}Jyun Tu and
Tzi{-}Ren Tsai and
Shu{-}Yi Ho and
Ting{-}Yan Jian and
Hsin{-}Yi Wu and
Pin{-}Rong Chen and
Nai{-}Chieh Lin and
Hsin{-}Tzu Huang and
Tzu{-}Ling Yang and
Chung{-}Yuan Pai and
Chun{-}San Tai and
Wen{-}Liang Chen and
Chia{-}Yen Huang and
Chun{-}Chi Liu and
Shun{-}Long Weng and
Kuang{-}Wen Liao and
Wen{-}Lian Hsu and
Hsien{-}Da Huang},
title = {miRTarBase 2016: updates to the experimentally validated miRNA-target
interactions database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {239--247},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1258},
doi = {10.1093/NAR/GKV1258},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChouCSHLLYHWTTH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChowZWCHLCHYC16,
author = {Chi{-}Nga Chow and
Han{-}Qin Zheng and
Nai{-}Yun Wu and
Chia{-}Hung Chien and
Hsien{-}Da Huang and
Tzong{-}Yi Lee and
Yi{-}Fan Chiang{-}Hsieh and
Ping{-}Fu Hou and
Tien{-}Yi Yang and
Wen{-}Chi Chang},
title = {PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing
transcriptional regulatory networks in plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1154--1160},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1035},
doi = {10.1093/NAR/GKV1035},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChowZWCHLCHYC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChungCSLWWC16,
author = {I{-}Fang Chung and
Chen{-}Yang Chen and
Shih{-}Chieh Su and
Chia{-}Yang Li and
Kou{-}Juey Wu and
Hsei{-}Wei Wang and
Wei{-}Chung Cheng},
title = {DriverDBv2: a database for human cancer driver gene research},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {975--979},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1314},
doi = {10.1093/NAR/GKV1314},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChungCSLWWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClarkKLOS16,
author = {Karen Clark and
Ilene Karsch{-}Mizrachi and
David J. Lipman and
James Ostell and
Eric W. Sayers},
title = {GenBank},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {67--72},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1276},
doi = {10.1093/NAR/GKV1276},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ClarkKLOS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneKTC16,
author = {Guy Cochrane and
Ilene Karsch{-}Mizrachi and
Toshihisa Takagi},
title = {The International Nucleotide Sequence Database Collaboration},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {48--50},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1323},
doi = {10.1093/NAR/GKV1323},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CochraneKTC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CohenDWDEKMS16,
author = {Ofir Cohen and
Shany Doron and
Omri Wurtzel and
Daniel Dar and
Sarit Edelheit and
Iris Karunker and
Eran Mick and
Rotem Sorek},
title = {Comparative transcriptomics across the prokaryotic tree of life},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W46--W53},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw394},
doi = {10.1093/NAR/GKW394},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CohenDWDEKMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Consortium16,
title = {Information Commons for Rice {(IC4R)}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1172--1180},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1141},
doi = {10.1093/NAR/GKV1141},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Consortium16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookBFCBA16,
author = {Charles E. Cook and
Mary Todd Bergman and
Robert D. Finn and
Guy Cochrane and
Ewan Birney and
Rolf Apweiler},
title = {The European Bioinformatics Institute in 2016: Data growth and integration},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {20--26},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1352},
doi = {10.1093/NAR/GKV1352},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CookBFCBA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Coordinators16,
title = {Database resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {7--19},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1290},
doi = {10.1093/NAR/GKV1290},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Coordinators16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Dabrowski-Tumanski16,
author = {Pawel Dabrowski{-}Tumanski and
Wanda Niemyska and
Pawel Pasznik and
Joanna I. Sulkowska},
title = {LassoProt: server to analyze biopolymers with lassos},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W383--W389},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw308},
doi = {10.1093/NAR/GKW308},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Dabrowski-Tumanski16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DashCCCHKKRSUWW16,
author = {Sudhansu Dash and
Jacqueline D. Campbell and
Ethalinda K. S. Cannon and
Alan M. Cleary and
Wei Huang and
Scott R. Kalberer and
Vijay Karingula and
Alex G. Rice and
Jugpreet Singh and
Pooja E. Umale and
Nathan T. Weeks and
Andrew P. Wilkey and
Andrew D. Farmer and
Steven B. Cannon},
title = {Legume information system (LegumeInfo.org): a key component of a set
of federated data resources for the legume family},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1181--1188},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1159},
doi = {10.1093/NAR/GKV1159},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DashCCCHKKRSUWW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DelepineLCF16,
author = {Baudoin Del{\'{e}}pine and
Vincent Libis and
Pablo Carbonell and
Jean{-}Loup Faulon},
title = {SensiPath: computer-aided design of sensing-enabling metabolic pathways},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W226--W231},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw305},
doi = {10.1093/NAR/GKW305},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DelepineLCF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DhapolaC16,
author = {Parashar Dhapola and
Shantanu Chowdhury},
title = {QuadBase2: web server for multiplexed guanine quadruplex mining and
visualization},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W277--W283},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw425},
doi = {10.1093/NAR/GKW425},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DhapolaC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DinkelRMKUAMSKB16,
author = {Holger Dinkel and
Kim Van Roey and
Sushama Michael and
Manjeet Kumar and
Bora Uyar and
Brigitte Altenberg and
Vladislava Milchevskaya and
Melanie Schneider and
Helen K{\"{u}}hn and
Annika Behrendt and
Sophie Luise Dahl and
Victoria Damerell and
Sandra Diebel and
Sara Kalman and
Steffen Klein and
Arne C. Knudsen and
Christina M{\"{a}}der and
Sabina Merrill and
Angelina Staudt and
Vera Thiel and
Lukas Welti and
Norman E. Davey and
Francesca Diella and
Toby J. Gibson},
title = {{ELM} 2016 - data update and new functionality of the eukaryotic linear
motif resource},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {294--300},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1291},
doi = {10.1093/NAR/GKV1291},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DinkelRMKUAMSKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DousseJZ16,
author = {Aline Dousse and
Thomas Junier and
Evgeny M. Zdobnov},
title = {{CEGA} - a catalog of conserved elements from genomic alignments},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {96--100},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1163},
doi = {10.1093/NAR/GKV1163},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DousseJZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DunbarKLMNRGKPD16,
author = {James Dunbar and
Konrad Krawczyk and
Jinwoo Leem and
Claire Marks and
Jaroslaw Nowak and
Cristian Regep and
Guy Georges and
Sebastian Kelm and
Bojana Popovic and
Charlotte M. Deane},
title = {SAbPred: a structure-based antibody prediction server},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W474--W478},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw361},
doi = {10.1093/NAR/GKW361},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DunbarKLMNRGKPD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EichingerNPJAR16,
author = {Valerie Eichinger and
Thomas Nussbaumer and
Alexander Platzer and
Marc{-}Andr{\'{e}} Jehl and
Roland Arnold and
Thomas Rattei},
title = {EffectiveDB - updates and novel features for a better annotation of
bacterial secreted proteins and Type III, IV, {VI} secretion systems},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {669--674},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1269},
doi = {10.1093/NAR/GKV1269},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EichingerNPJAR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ElsikTDUENH16,
author = {Christine G. Elsik and
Aditi Tayal and
Colin M. Diesh and
Deepak R. Unni and
Marianne L. Emery and
Hung N. Nguyen and
Darren E. Hagen},
title = {Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {793--800},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1208},
doi = {10.1093/NAR/GKV1208},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ElsikTDUENH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ElsikUDTENH16,
author = {Christine G. Elsik and
Deepak R. Unni and
Colin M. Diesh and
Aditi Tayal and
Marianne L. Emery and
Hung N. Nguyen and
Darren E. Hagen},
title = {Bovine Genome Database: new tools for gleaning function from the \emph{Bos
taurus} genome},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {834--839},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1077},
doi = {10.1093/NAR/GKV1077},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ElsikUDTENH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EsguerraSBSG16,
author = {Mauricio Esguerra and
Alexey Siretskiy and
Xabier Bello and
Jessica Sallander and
Hugo Guti{\'{e}}rrez{-}de{-}Ter{\'{a}}n},
title = {GPCR-ModSim: {A} comprehensive web based solution for modeling G-protein
coupled receptors},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W455--W462},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw403},
doi = {10.1093/NAR/GKW403},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EsguerraSBSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FabregatSGGHHJJ16,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Phani V. Garapati and
Marc Gillespie and
Kerstin Hausmann and
Robin Haw and
Bijay Jassal and
Steven Jupe and
Florian Korninger and
Sheldon J. McKay and
Lisa Matthews and
Bruce May and
Marija Milacic and
Karen Rothfels and
Veronica Shamovsky and
Marissa Webber and
Joel Weiser and
Mark Williams and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The Reactome pathway Knowledgebase},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {481--487},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1351},
doi = {10.1093/NAR/GKV1351},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FabregatSGGHHJJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FallmannSTKH16,
author = {J{\"{o}}rg Fallmann and
Vitaly Sedlyarov and
Andrea Tanzer and
Pavel Kovarik and
Ivo L. Hofacker},
title = {AREsite2: an enhanced database for the comprehensive investigation
of AU/GU/U-rich elements},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {90--95},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1238},
doi = {10.1093/NAR/GKV1238},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FallmannSTKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FanSARKX16,
author = {Yannan Fan and
Keith Siklenka and
Simran K. Arora and
Paula Ribeiro and
Sarah Kimmins and
Jianguo Xia},
title = {miRNet - dissecting miRNA-target interactions and functional associations
through network-based visual analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W135--W141},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw288},
doi = {10.1093/NAR/GKW288},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FanSARKX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnCEEMMPPQSST16,
author = {Robert D. Finn and
Penelope Coggill and
Ruth Y. Eberhardt and
Sean R. Eddy and
Jaina Mistry and
Alex L. Mitchell and
Simon C. Potter and
Marco Punta and
Matloob Qureshi and
Amaia Sangrador{-}Vegas and
Gustavo A. Salazar and
John G. Tate and
Alex Bateman},
title = {The Pfam protein families database: towards a more sustainable future},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {279--285},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1344},
doi = {10.1093/NAR/GKV1344},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FinnCEEMMPPQSST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlissiDMTJNJLP16,
author = {Areski Flissi and
Yoann Dufresne and
Juraj Michalik and
Laurie Tonon and
St{\'{e}}phane Janot and
Laurent No{\'{e}} and
Philippe Jacques and
Val{\'{e}}rie Lecl{\`{e}}re and
Maude Pupin},
title = {Norine, the knowledgebase dedicated to non-ribosomal peptides, is
now open to crowdsourcing},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1113--1118},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1143},
doi = {10.1093/NAR/GKV1143},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlissiDMTJNJLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlodenTCMNC16,
author = {Evan W. Floden and
Paolo Di Tommaso and
Maria Chatzou and
Cedrik Magis and
C{\'{e}}dric Notredame and
Jia{-}Ming Chang},
title = {PSI/TM-Coffee: a web server for fast and accurate multiple sequence
alignments of regular and transmembrane proteins using homology extension
on reduced databases},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W339--W343},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw300},
doi = {10.1093/NAR/GKW300},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlodenTCMNC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ForsterBKHDMFL16,
author = {Samuel C. Forster and
Hilary P. Browne and
Nitin Kumar and
Martin Hunt and
Hubert Denise and
Alex L. Mitchell and
Robert D. Finn and
Trevor D. Lawley},
title = {{HPMCD:} the database of human microbial communities from metagenomic
datasets and microbial reference genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {604--609},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1216},
doi = {10.1093/NAR/GKV1216},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ForsterBKHDMFL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Furio-TariTGEC16,
author = {Pedro Furi{\'{o}}{-}Tar{\'{\i}} and
Sonia Tarazona and
Toni Gabald{\'{o}}n and
Anton J. Enright and
Ana Conesa},
title = {spongeScan: {A} web for detecting microRNA binding elements in lncRNA
sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W176--W180},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw443},
doi = {10.1093/NAR/GKW443},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Furio-TariTGEC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaillardSD16,
author = {Thomas Gaillard and
Roland H. Stote and
Annick Dejaegere},
title = {PSSweb: protein structural statistics web server},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W401--W405},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw332},
doi = {10.1093/NAR/GKW332},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/GaillardSD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GallartPLSC16,
author = {Andreu Paytuv{\'{\i}} Gallart and
Antonio Hermoso Pulido and
Irantzu Anzar Mart{\'{\i}}nez de Lagr{\'{a}}n and
Walter Sanseverino and
Riccardo Aiese Cigliano},
title = {{GREENC:} a Wiki-based database of plant lncRNAs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1161--1166},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1215},
doi = {10.1093/NAR/GKV1215},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GallartPLSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroSSLM16,
author = {Socorro Gama{-}Castro and
Heladia Salgado and
Alberto Santos{-}Zavaleta and
Daniela Ledezma{-}Tejeida and
Luis Mu{\~{n}}iz{-}Rascado and
Jair Santiago Garc{\'{\i}}a{-}Sotelo and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Irma Mart{\'{\i}}nez{-}Flores and
Lucia Pannier and
Jaime Abraham Castro{-}Mondrag{\'{o}}n and
Alejandra Medina{-}Rivera and
Hilda Solano{-}Lira and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ernesto P{\'{e}}rez{-}Rueda and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Liliana Porr{\'{o}}n{-}Sotelo and
Alejandra L{\'{o}}pez{-}Fuentes and
Anastasia Hern{\'{a}}ndez{-}Koutoucheva and
Victor del Moral{-}Ch{\'{a}}vez and
Fabio Rinaldi and
Julio Collado{-}Vides},
title = {RegulonDB version 9.0: high-level integration of gene regulation,
coexpression, motif clustering and beyond},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {133--143},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1156},
doi = {10.1093/NAR/GKV1156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroSSLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GandhimathiGHMS16,
author = {Arumugam Gandhimathi and
Pritha Ghosh and
Sridhar Hariharaputran and
Oommen K. Mathew and
Ramanathan Sowdhamini},
title = {{PASS2} database for the structure-based sequence alignment of distantly
related {SCOP} domain superfamilies: update to version 5 and added
features},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {410--414},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1205},
doi = {10.1093/NAR/GKV1205},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GandhimathiGHMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GauthierRGSSSM16,
author = {Nicholas Paul Gauthier and
Ed Reznik and
Jianjiong Gao and
Sel{\c{c}}uk Onur S{\"{u}}mer and
Nikolaus Schultz and
Chris Sander and
Martin L. Miller},
title = {MutationAligner: a resource of recurrent mutation hotspots in protein
domains in cancer},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {986--991},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1132},
doi = {10.1093/NAR/GKV1132},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GauthierRGSSSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GazzoDCBADSL16,
author = {Andrea M. Gazzo and
Dorien Daneels and
Elisa Cilia and
Maryse Bonduelle and
Marc Abramowicz and
Sonia Van Dooren and
Guillaume Smits and
Tom Lenaerts},
title = {{NAR} Breakthrough Article: {DIDA:} {A} curated and annotated digenic
diseases database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {900--907},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1068},
doi = {10.1093/NAR/GKV1068},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GazzoDCBADSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GeorgakilasVZVP16,
author = {Georgios K. Georgakilas and
Ioannis S. Vlachos and
Konstantinos Zagganas and
Thanasis Vergoulis and
Maria D. Paraskevopoulou and
Ilias Kanellos and
Panayiotis Tsanakas and
Dimitris Dellis and
Athanasios Fevgas and
Theodore Dalamagas and
Artemis G. Hatzigeorgiou},
title = {DIANA-miRGen v3.0: accurate characterization of microRNA promoters
and their regulators},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {190--195},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1254},
doi = {10.1093/NAR/GKV1254},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GeorgakilasVZVP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GibsonAACCGHJKL16,
author = {Richard Gibson and
Blaise T. F. Alako and
Clara Amid and
Ana Cerde{\~{n}}o{-}T{\'{a}}rraga and
Iain Cleland and
Neil Goodgame and
Petra ten Hoopen and
Suran Jayathilaka and
Simon Kay and
Rasko Leinonen and
Xin Liu and
Swapna Pallreddy and
Nima Pakseresht and
Jeena Rajan and
Marc Rossello and
Nicole Silvester and
Dimitriy Smirnov and
Ana Luisa Toribio and
Daniel Vaughan and
Vadim Zalunin and
Guy Cochrane},
title = {Biocuration of functional annotation at the European nucleotide archive},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {58--66},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1311},
doi = {10.1093/NAR/GKV1311},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GibsonAACCGHJKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GilsonLBNHC16,
author = {Michael K. Gilson and
Tiqing Liu and
Michael Baitaluk and
George Nicola and
Linda Hwang and
Jenny Chong},
title = {BindingDB in 2015: {A} public database for medicinal chemistry, computational
chemistry and systems pharmacology},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1045--1053},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1072},
doi = {10.1093/NAR/GKV1072},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GilsonLBNHC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GohlkeNODP16,
author = {Bj{\"{o}}rn{-}Oliver Gohlke and
Janette Nickel and
Raik Otto and
Mathias Dunkel and
Robert Preissner},
title = {CancerResource - updated database of cancer-relevant proteins, mutations
and interacting drugs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {932--937},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1283},
doi = {10.1093/NAR/GKV1283},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GohlkeNODP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GressRBKK16,
author = {Alexander Gre{\ss} and
Vasily Ramensky and
Joachim B{\"{u}}ch and
Andreas Keller and
Olga V. Kalinina},
title = {StructMAn: annotation of single-nucleotide polymorphisms in the structural
context},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W463--W468},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw364},
doi = {10.1093/NAR/GKW364},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GressRBKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GreuterLHR16,
author = {Daniel Greuter and
Alexander Loy and
Matthias Horn and
Thomas Rattei},
title = {probeBase - an online resource for rRNA-targeted oligonucleotide probes
and primers: new features 2016},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {586--589},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1232},
doi = {10.1093/NAR/GKV1232},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GreuterLHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuoDQW16,
author = {Liyuan Guo and
Yang Du and
Susu Qu and
Jing Wang},
title = {rVarBase: an updated database for regulatory features of human variants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {888--893},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1107},
doi = {10.1093/NAR/GKV1107},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuoDQW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuoLZ16,
author = {Jing Guo and
Hui Liu and
Jie Zheng},
title = {SynLethDB: synthetic lethality database toward discovery of selective
and sensitive anticancer drug targets},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1011--1017},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1108},
doi = {10.1093/NAR/GKV1108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuoLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HamadaOKSKFMA16,
author = {Michiaki Hamada and
Yukiteru Ono and
Hisanori Kiryu and
Kengo Sato and
Yuki Kato and
Tsukasa Fukunaga and
Ryota Mori and
Kiyoshi Asai},
title = {Rtools: a web server for various secondary structural analyses on
single {RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W302--W307},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw337},
doi = {10.1093/NAR/GKW337},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HamadaOKSKFMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HaoJYWZGY16,
author = {Ge{-}Fei Hao and
Wen Jiang and
Yuan{-}Nong Ye and
Feng{-}Xu Wu and
Xiao{-}Lei Zhu and
Feng{-}Biao Guo and
Guangfu Yang},
title = {{ACFIS:} a web server for fragment-based drug discovery},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W550--W556},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw393},
doi = {10.1093/NAR/GKW393},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HaoJYWZGY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HastingsODEKMTS16,
author = {Janna Hastings and
Gareth I. Owen and
Adriano Dekker and
Marcus Ennis and
Namrata Kale and
Venkatesh Muthukrishnan and
Steve Turner and
Neil Swainston and
Pedro Mendes and
Christoph Steinbeck},
title = {ChEBI in 2016: Improved services and an expanding collection of metabolites},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1214--1219},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1031},
doi = {10.1093/NAR/GKV1031},
timestamp = {Fri, 24 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HastingsODEKMTS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeCDYQZLHHRGDLW16,
author = {Bifang He and
Guoshi Chai and
Yaocong Duan and
Zhiqiang Yan and
Liuyang Qiu and
Huixiong Zhang and
Zechun Liu and
Qiang He and
Ke Han and
Beibei Ru and
Feng{-}Biao Guo and
Hui Ding and
Hao Lin and
Xianlong Wang and
Nini Rao and
Peng Zhou and
Jian Huang},
title = {{BDB:} biopanning data bank},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1127--1132},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1100},
doi = {10.1093/NAR/GKV1100},
timestamp = {Mon, 18 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeCDYQZLHHRGDLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeHXHJLHB16,
author = {Song He and
Haochen He and
Wenjian Xu and
Xin Huang and
Shuai Jiang and
Fei Li and
Fuchu He and
Xiaochen Bo},
title = {{ICM:} a web server for integrated clustering of multi-dimensional
biomedical data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W154--W159},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw378},
doi = {10.1093/NAR/GKW378},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeHXHJLHB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeZGLCH16,
author = {Zilong He and
Huangkai Zhang and
Shenghan Gao and
Martin J. Lercher and
Wei{-}Hua Chen and
Songnian Hu},
title = {Evolview v2: an online visualization and management tool for customized
and annotated phylogenetic trees},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W236--W241},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw370},
doi = {10.1093/NAR/GKW370},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeZGLCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HolmL16,
author = {Liisa Holm and
Laura M. Laakso},
title = {Dali server update},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W351--W355},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw357},
doi = {10.1093/NAR/GKW357},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HolmL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HospitalACCBDBT16,
author = {Adam Hospital and
Pau Andrio and
Cesare Cugnasco and
Laia Cod{\'{o}} and
Yolanda Becerra and
Pablo D. Dans and
Federica Battistini and
Jordi Torres and
Josep Ram{\'{o}}n Go{\~{n}}i and
Modesto Orozco and
Josep Lluis Gelp{\'{\i}}},
title = {BIGNASim: a NoSQL database structure and analysis portal for nucleic
acids simulation data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {272--278},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1301},
doi = {10.1093/NAR/GKV1301},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HospitalACCBDBT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoweBCCCDDDGGHK16,
author = {Kevin L. Howe and
Bruce J. Bolt and
Scott Cain and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
James Done and
Thomas A. Down and
Sibyl Gao and
Christian A. Grove and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Jane Lomax and
Yuling Li and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Paulo A. S. Nuin and
Michael Paulini and
Daniela Raciti and
Gary Schindelman and
Eleanor Stanley and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Adam Wright and
Karen Yook and
Matthew Berriman and
Paul J. Kersey and
Tim Schedl and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2016: expanding to enable helminth genomic research},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {774--780},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1217},
doi = {10.1093/NAR/GKV1217},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoweBCCCDDDGGHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HrabeLSRJG16,
author = {Thomas Hrabe and
Zhanwen Li and
Mayya Sedova and
Piotr Rotkiewicz and
Lukasz Jaroszewski and
Adam Godzik},
title = {PDBFlex: exploring flexibility in protein structures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {423--428},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1316},
doi = {10.1093/NAR/GKV1316},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HrabeLSRJG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HsinMAKWKK16,
author = {Kun{-}Yi Hsin and
Yukiko Matsuoka and
Yoshiyuki Asai and
Kyota Kamiyoshi and
Tokiko Watanabe and
Yoshihiro Kawaoka and
Hiroaki Kitano},
title = {systemsDock: a web server for network pharmacology-based prediction
and analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W507--W513},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw335},
doi = {10.1093/NAR/GKW335},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HsinMAKWKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuPR16,
author = {Zhi{-}Liang Hu and
Carissa A. Park and
James M. Reecy},
title = {Developmental progress and current status of the Animal QTLdb},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {827--833},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1233},
doi = {10.1093/NAR/GKV1233},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuangSKHJCHL16,
author = {Kai{-}Yao Huang and
Min{-}Gang Su and
Hui{-}Ju Kao and
Yun{-}Chung Hsieh and
Jhih{-}Hua Jhong and
Kuang{-}Hao Cheng and
Hsien{-}Da Huang and
Tzong{-}Yi Lee},
title = {dbPTM 2016: 10-year anniversary of a resource for post-translational
modification of proteins},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {435--446},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1240},
doi = {10.1093/NAR/GKV1240},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuangSKHJCHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubleyFCEJBSW16,
author = {Robert Hubley and
Robert D. Finn and
Jody Clements and
Sean R. Eddy and
Thomas A. Jones and
Weidong Bao and
Arian F. A. Smit and
Travis J. Wheeler},
title = {The Dfam database of repetitive {DNA} families},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {81--89},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1272},
doi = {10.1093/NAR/GKV1272},
timestamp = {Thu, 23 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubleyFCEJBSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasSFC16,
author = {Jaime Huerta{-}Cepas and
Damian Szklarczyk and
Kristoffer Forslund and
Helen Cook and
Davide Heller and
Mathias C. Walter and
Thomas Rattei and
Daniel R. Mende and
Shinichi Sunagawa and
Michael Kuhn and
Lars Juhl Jensen and
Christian von Mering and
Peer Bork},
title = {eggNOG 4.5: a hierarchical orthology framework with improved functional
annotations for eukaryotic, prokaryotic and viral sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {286--293},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1248},
doi = {10.1093/NAR/GKV1248},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasSFC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsbergMMRHHVBVG16,
author = {Vignir {\'{I}}sberg and
Stefan Mordalski and
Christian Munk and
Krzysztof Rataj and
Kasper Harps{\o}e and
Alexander S. Hauser and
Bas Vroling and
Andrzej J. Bojarski and
Gert Vriend and
David E. Gloriam},
title = {GPCRdb: an information system for {G} protein-coupled receptors},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {356--364},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1178},
doi = {10.1093/NAR/GKV1178},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsbergMMRHHVBVG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsmerRTGPH16,
author = {Jochen Ismer and
Alexander S. Rose and
Johanna K. S. Tiemann and
Andrean Goede and
Robert Preissner and
Peter W. Hildebrand},
title = {{SL2:} an interactive webtool for modeling of missing segments in
proteins},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W390--W394},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw297},
doi = {10.1093/NAR/GKW297},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsmerRTGPH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
author = {Jon C. Ison and
Kristoffer Rapacki and
Herv{\'{e}} M{\'{e}}nager and
Mat{\'{u}}s Kalas and
Emil Rydza and
Piotr Chmura and
Christian Anthon and
Niall Beard and
Karel Berka and
Dan M. Bolser and
Tim Booth and
Anthony Bretaudeau and
Jan Brezovsky and
Rita Casadio and
Gianni Cesareni and
Frederik Coppens and
Michael Cornell and
Gianmauro Cuccuru and
Kristian Davidsen and
Gianluca Della Vedova and
Tunca Dogan and
Olivia Doppelt{-}Azeroual and
Laura Emery and
Elisabeth Gasteiger and
Thomas Gatter and
Tatyana Goldberg and
Marie Grosjean and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Manuela Helmer{-}Citterich and
Hans Ienasescu and
Vassilios Ioannidis and
Martin Closter Jespersen and
Rafael C. Jim{\'{e}}nez and
Nick S. Juty and
Peter Juvan and
Maximilian Koch and
Camille Laibe and
Jing{-}Woei Li and
Luana Licata and
Fabien Mareuil and
Ivan Micetic and
Rune M{\o}llegaard Friborg and
S{\'{e}}bastien Moretti and
Chris Morris and
Steffen M{\"{o}}ller and
Aleksandra Nenadic and
Hedi Peterson and
Giuseppe Profiti and
Peter M. Rice and
Paolo Romano and
Paola Roncaglia and
Rabie Saidi and
Andrea Schafferhans and
Veit Schw{\"{a}}mmle and
Callum Smith and
Maria Maddalena Sperotto and
Heinz Stockinger and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Silvio C. E. Tosatto and
Victor de la Torre and
Paolo Uva and
Allegra Via and
Guy Yachdav and
Federico Zambelli and
Gert Vriend and
Burkhard Rost and
Helen E. Parkinson and
Peter L{\o}ngreen and
S{\o}ren Brunak},
title = {Tools and data services registry: a community effort to document bioinformatics
resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {38--47},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1116},
doi = {10.1093/NAR/GKV1116},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JehlMSHD16,
author = {Peter Jehl and
Jean Manguy and
Denis C. Shields and
Desmond G. Higgins and
Norman E. Davey},
title = {ProViz - a web-based visualization tool to investigate the functional
and evolutionary features of protein sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W11--W15},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw265},
doi = {10.1093/NAR/GKW265},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JehlMSHD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JeongSKSCCCNK16,
author = {Hyeonsoo Jeong and
Samsun Sung and
Taehyung Kwon and
Minseok Seo and
Kelsey Caetano{-}Anoll{\'{e}}s and
Sang Ho Choi and
Seoae Cho and
Arshan Nasir and
Heebal Kim},
title = {HGTree: database of horizontally transferred genes determined by tree
reconciliation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {610--619},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1245},
doi = {10.1093/NAR/GKV1245},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JeongSKSCCCNK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JosephBBI16,
author = {Shaini Joseph and
Ram Shankar Barai and
Rasika Bhujbalrao and
Susan Idicula{-}Thomas},
title = {{PCOSKB:} {A} KnowledgeBase on genes, diseases, ontology terms and
biochemical pathways associated with PolyCystic Ovary Syndrome},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1032--1035},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1146},
doi = {10.1093/NAR/GKV1146},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JosephBBI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KanehisaSKFT16,
author = {Minoru Kanehisa and
Yoko Sato and
Masayuki Kawashima and
Miho Furumichi and
Mao Tanabe},
title = {{KEGG} as a reference resource for gene and protein annotation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {457--462},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1070},
doi = {10.1093/NAR/GKV1070},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KanehisaSKFT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerseyAABBCCDFG16,
author = {Paul Julian Kersey and
James E. Allen and
Irina M. Armean and
Sanjay Boddu and
Bruce J. Bolt and
Denise Carvalho{-}Silva and
Mikkel B. Christensen and
Paul Davis and
Lee J. Falin and
Christoph Grabmueller and
Jay C. Humphrey and
Arnaud Kerhornou and
Julia Khobova and
Naveen K. Aranganathan and
Nicholas Langridge and
Ernesto Lowy{-}Gallego and
Mark D. McDowall and
Uma Maheswari and
Michael Nuhn and
Chuang Kee Ong and
Bert Overduin and
Michael Paulini and
Helder Pedro and
Emily Perry and
Giulietta Spudich and
Electra Tapanari and
Brandon Walts and
Gareth Williams and
Marcela K. Tello{-}Ruiz and
Joshua C. Stein and
Sharon Wei and
Doreen Ware and
Daniel M. Bolser and
Kevin L. Howe and
Eugene Kulesha and
Daniel Lawson and
Gareth Maslen and
Daniel M. Staines},
title = {Ensembl Genomes 2016: more genomes, more complexity},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {574--580},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1209},
doi = {10.1093/NAR/GKV1209},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KerseyAABBCCDFG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KhalidAWP16,
author = {Fahad Khalid and
Jos{\'{e}} Aguilar{-}Rodr{\'{\i}}guez and
Andreas Wagner and
Joshua L. Payne},
title = {Genonets server - a web server for the construction, analysis and
visualization of genotype networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W70--W76},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw313},
doi = {10.1093/NAR/GKW313},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KhalidAWP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KhanZ16,
author = {Aziz Khan and
Xuegong Zhang},
title = {dbSUPER: a database of super-enhancers in mouse and human genome},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {164--171},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1002},
doi = {10.1093/NAR/GKV1002},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KhanZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimCVPEHNWMCPAR16,
author = {Mara Kim and
Brian A. Cooper and
Rohit Venkat and
Julie B. Phillips and
Haley R. Eidem and
Jibril Hirbo and
Sashank Nutakki and
Scott M. Williams and
Louis J. Muglia and
J. Anthony Capra and
Kenneth Petren and
Patrick Abbot and
Antonis Rokas and
Kriston L. McGary},
title = {GEneSTATION 1.0: a synthetic resource of diverse evolutionary and
functional genomic data for studying the evolution of pregnancy-associated
tissues and phenotypes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {908--916},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1137},
doi = {10.1093/NAR/GKV1137},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimCVPEHNWMCPAR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimCZZ16,
author = {Pora Kim and
Feixiong Cheng and
Junfei Zhao and
Zhongming Zhao},
title = {ccmGDB: a database for cancer cell metabolism genes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {959--968},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1128},
doi = {10.1093/NAR/GKV1128},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimCZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimHKSKYSSML16,
author = {Eiru Kim and
Sohyun Hwang and
Hyojin Kim and
Hongseok Shim and
Byunghee Kang and
Sunmo Yang and
Jae Ho Shim and
Seung Yeon Shin and
Edward M. Marcotte and
Insuk Lee},
title = {MouseNet v2: a database of gene networks for studying the laboratory
mouse and eight other model vertebrates},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {848--854},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1155},
doi = {10.1093/NAR/GKV1155},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KimHKSKYSSML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimKAK016,
author = {Hyerin Kim and
NaNa Kang and
Kyuhyeon An and
Jae Hyung Koo and
Min{-}Soo Kim},
title = {MRPrimerW: a tool for rapid design of valid high-quality primers for
multiple target qPCR experiments},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W259--W266},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw380},
doi = {10.1093/NAR/GKW380},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimKAK016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimTBCFGHHHSWYZ16,
author = {Sunghwan Kim and
Paul A. Thiessen and
Evan Bolton and
Jie Chen and
Gang Fu and
Asta Gindulyte and
Lianyi Han and
Jane He and
Siqian He and
Benjamin A. Shoemaker and
Jiyao Wang and
Bo Yu and
Jian Zhang and
Stephen H. Bryant},
title = {PubChem Substance and Compound databases},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1202--1213},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv951},
doi = {10.1093/NAR/GKV951},
timestamp = {Tue, 26 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KimTBCFGHHHSWYZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KingLDMFLEPL16,
author = {Zachary A. King and
Justin Lu and
Andreas Dr{\"{a}}ger and
Philip Miller and
Stephen Federowicz and
Joshua A. Lerman and
Ali Ebrahim and
Bernhard O. Palsson and
Nathan E. Lewis},
title = {BiGG Models: {A} platform for integrating, standardizing and sharing
genome-scale models},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {515--522},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1049},
doi = {10.1093/NAR/GKV1049},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KingLDMFLEPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KittsCTCHSSTXZD16,
author = {Paul A. Kitts and
Deanna M. Church and
Fran{\c{c}}oise Thibaud{-}Nissen and
Jinna Choi and
Vichet Hem and
Victor Sapojnikov and
Robert G. Smith and
Tatiana A. Tatusova and
Charlie Xiang and
Andrey Zherikov and
Michael DiCuccio and
Terence D. Murphy and
Kim D. Pruitt and
Avi Kimchi},
title = {Assembly: a resource for assembled genomes at {NCBI}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {73--80},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1226},
doi = {10.1093/NAR/GKV1226},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KittsCTCHSSTXZD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KlementzDLTEDES16,
author = {Dennis Klementz and
Kersten D{\"{o}}ring and
Xavier Lucas and
Kiran K. Telukunta and
Anika Erxleben and
Denise Deubel and
Astrid Erber and
Irene Santillana and
Oliver S. Thomas and
Andreas Bechthold and
Stefan G{\"{u}}nther},
title = {StreptomeDB 2.0 - an extended resource of natural products produced
by streptomycetes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {509--514},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1319},
doi = {10.1093/NAR/GKV1319},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KlementzDLTEDES16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KooistraKLLEG16,
author = {Albert J. Kooistra and
Georgi K. Kanev and
Oscar P. J. van Linden and
Rob Leurs and
Iwan J. P. de Esch and
Chris de Graaf},
title = {{KLIFS:} a structural kinase-ligand interaction database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {365--371},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1082},
doi = {10.1093/NAR/GKV1082},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KooistraKLLEG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KotlyarPSJ16,
author = {Max Kotlyar and
Chiara Pastrello and
Nicholas Sheahan and
Igor Jurisica},
title = {Integrated interactions database: tissue-specific view of the human
and model organism interactomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {536--541},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1115},
doi = {10.1093/NAR/GKV1115},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KotlyarPSJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuhnLJB16,
author = {Michael Kuhn and
Ivica Letunic and
Lars Juhl Jensen and
Peer Bork},
title = {The {SIDER} database of drugs and side effects},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1075--1079},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1075},
doi = {10.1093/NAR/GKV1075},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KuhnLJB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KulakovskiyVYSK16,
author = {Ivan V. Kulakovskiy and
Ilya E. Vorontsov and
Ivan S. Yevshin and
Anastasiia V. Soboleva and
Artem S. Kasianov and
Haitham Ashoor and
Wail Ba{-}alawi and
Vladimir B. Bajic and
Yulia A. Medvedeva and
Fedor A. Kolpakov and
Vsevolod J. Makeev},
title = {{HOCOMOCO:} expansion and enhancement of the collection of transcription
factor binding sites models},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {116--125},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1249},
doi = {10.1093/NAR/GKV1249},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KulakovskiyVYSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuleshovJRFDWKJ16,
author = {Maxim V. Kuleshov and
Matthew R. Jones and
Andrew D. Rouillard and
Nicolas F. Fernandez and
Qiaonan Duan and
Zichen Wang and
Simon Koplev and
Sherry L. Jenkins and
Kathleen M. Jagodnik and
Alexander Lachmann and
Michael G. McDermott and
Caroline D. Monteiro and
Gregory W. Gundersen and
Avi Ma'ayan},
title = {Enrichr: a comprehensive gene set enrichment analysis web server 2016
update},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W90--W97},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw377},
doi = {10.1093/NAR/GKW377},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KuleshovJRFDWKJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KunduruNR16,
author = {Bharathi Reddy Kunduru and
Sanjana Anilkumar Nair and
Thenmalarchelvi Rathinavelan},
title = {{EK3D:} an \emph{E}. \emph{coli} {K} antigen 3-dimensional structure
database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {675--681},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1313},
doi = {10.1093/NAR/GKV1313},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KunduruNR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KutmonRNHWBMWSM16,
author = {Martina Kutmon and
Anders Riutta and
Nuno Nunes and
Kristina Hanspers and
Egon L. Willighagen and
Anwesha Bohler and
Jonathan M{\'{e}}lius and
Andra Waagmeester and
Sravanthi R. Sinha and
Ryan A. Miller and
Susan L. Coort and
Elisa Cirillo and
Bart Smeets and
Chris T. A. Evelo and
Alexander R. Pico},
title = {WikiPathways: capturing the full diversity of pathway knowledge},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {488--494},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1024},
doi = {10.1093/NAR/GKV1024},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KutmonRNHWBMWSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuwaharaACG16,
author = {Hiroyuki Kuwahara and
Meshari Alazmi and
Xuefeng Cui and
Xin Gao},
title = {{MRE:} a web tool to suggest foreign enzymes for the biosynthesis
pathway design with competing endogenous reactions in mind},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W217--W225},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw342},
doi = {10.1093/NAR/GKW342},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KuwaharaACG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LabbeKZVNLMVS16,
author = {C{\'{e}}line M. Labb{\'{e}} and
M{\'{e}}laine A. Kuenemann and
Barbara Zarzycka and
Gert Vriend and
Gerry A. F. Nicolaes and
David Lagorce and
Maria A. Miteva and
Bruno O. Villoutreix and
Olivier Sperandio},
title = {iPPI-DB: an online database of modulators of protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {542--547},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv982},
doi = {10.1093/NAR/GKV982},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LabbeKZVNLMVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LabunMGTV16,
author = {Kornel Labun and
Tessa G. Montague and
James A. Gagnon and
Summer B. Thyme and
Eivind Valen},
title = {{CHOPCHOP} v2: a web tool for the next generation of {CRISPR} genome
engineering},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W272--W276},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw398},
doi = {10.1093/NAR/GKW398},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LabunMGTV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LamDDSALLOL16,
author = {Su Datt Lam and
Natalie L. Dawson and
Sayoni Das and
Ian Sillitoe and
Paul Ashford and
David A. Lee and
Sonja Lehtinen and
Christine A. Orengo and
Jonathan G. Lees},
title = {Gene3D: expanding the utility of domain assignments},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {404--409},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1231},
doi = {10.1093/NAR/GKV1231},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LamDDSALLOL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LamiableTRVDT16,
author = {Alexis Lamiable and
Pierre Th{\'{e}}venet and
Julien Rey and
Marek Vavrusa and
Philippe Derreumaux and
Pierre Tuff{\'{e}}ry},
title = {{PEP-FOLD3:} faster de novo structure prediction for linear peptides
in solution and in complex},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W449--W454},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw329},
doi = {10.1093/NAR/GKW329},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LamiableTRVDT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LandrumLBBCCGHH16,
author = {Melissa J. Landrum and
Jennifer M. Lee and
Mark Benson and
Garth R. Brown and
Chen Chao and
Shanmuga Chitipiralla and
Baoshan Gu and
Jennifer Hart and
Douglas Hoffman and
Jeffrey Hoover and
Wonhee Jang and
Kenneth S. Katz and
Michael Ovetsky and
George R. Riley and
Amanjeev Sethi and
Ray E. Tully and
Ricardo Villamar{\'{\i}}n{-}Salom{\'{o}}n and
Wendy S. Rubinstein and
Donna R. Maglott},
title = {ClinVar: public archive of interpretations of clinically relevant
variants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {862--868},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1222},
doi = {10.1093/NAR/GKV1222},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LandrumLBBCCGHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LaskerSMMDMS16,
author = {Keren Lasker and
Jared M. Schrader and
Yifei Men and
Tyler Marshik and
David L. Dill and
Harley H. McAdams and
Lucy Shapiro},
title = {CauloBrowser: {A} systems biology resource for \emph{Caulobacter crescentus}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {640--645},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1050},
doi = {10.1093/NAR/GKV1050},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LaskerSMMDMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LawsonPBHSHLLPS16,
author = {Catherine L. Lawson and
Ardan Patwardhan and
Matthew L. Baker and
Corey Hryc and
Eduardo Sanz{-}Garc{\'{\i}}a and
Brian P. Hudson and
Ingvar C. Lagerstedt and
Steven J. Ludtke and
Grigore Pintilie and
Raul Sala and
John D. Westbrook and
Helen M. Berman and
Gerard J. Kleywegt and
Wah Chiu},
title = {EMDataBank unified data resource for 3DEM},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {396--403},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1126},
doi = {10.1093/NAR/GKV1126},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LawsonPBHSHLLPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeHCSLKK16,
author = {Jongin Lee and
Woonyoung Hong and
Minah Cho and
Mikang Sim and
Daehwan Lee and
Younhee Ko and
Jaebum Kim},
title = {Synteny Portal: a web-based application portal for synteny block analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W35--W40},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw310},
doi = {10.1093/NAR/GKW310},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeHCSLKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeS16,
author = {Gyu Rie Lee and
Chaok Seok},
title = {Galaxy7TM: flexible GPCR-ligand docking by structure refinement},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W502--W506},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw360},
doi = {10.1093/NAR/GKW360},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LesurfCWGKJMGC16,
author = {Robert Lesurf and
Kelsy C. Cotto and
Grace Wang and
Malachi Griffith and
Katayoon Kasaian and
Steven J. M. Jones and
Stephen B. Montgomery and
Obi L. Griffith},
title = {ORegAnno 3.0: a community-driven resource for curated regulatory annotation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {126--132},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1203},
doi = {10.1093/NAR/GKV1203},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LesurfCWGKJMGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LetunicB16,
author = {Ivica Letunic and
Peer Bork},
title = {Interactive tree of life (iTOL) v3: an online tool for the display
and annotation of phylogenetic and other trees},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W242--W245},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw290},
doi = {10.1093/NAR/GKW290},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LetunicB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeungKAVUKGW16,
author = {Yuk Yee Leung and
Pavel P. Kuksa and
Alexandre Amlie{-}Wolf and
Otto Valladares and
Lyle H. Ungar and
Sampath Kannan and
Brian D. Gregory and
Li{-}San Wang},
title = {{DASHR:} database of small human noncoding RNAs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {216--222},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1188},
doi = {10.1093/NAR/GKV1188},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeungKAVUKGW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiCYB16,
author = {Hongchun Li and
Yuan{-}Yu Chang and
Lee{-}Wei Yang and
Ivet Bahar},
title = {\emph{i}GNM 2.0: the Gaussian network model database for biomolecular
structural dynamics},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {415--422},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1236},
doi = {10.1093/NAR/GKV1236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiCYB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiDZZ16,
author = {Jun Li and
Xinbin Dai and
Zhaohong Zhuang and
Patrick Xuechun Zhao},
title = {LegumeIP 2.0 - a platform for the study of gene function and genome
evolution in legumes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1189--1194},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1237},
doi = {10.1093/NAR/GKV1237},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiDZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiLWB16,
author = {Hongjian Li and
Kwong{-}Sak Leung and
Man Hon Wong and
Pedro J. Ballester},
title = {{USR-VS:} a web server for large-scale prospective virtual screening
using ultrafast shape recognition techniques},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W436--W441},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw320},
doi = {10.1093/NAR/GKW320},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiLWB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiLWWNKYSCXW16,
author = {Mulin Jun Li and
Zipeng Liu and
Panwen Wang and
Maria P. Wong and
Matthew R. Nelson and
Jean{-}Pierre A. Kocher and
Meredith Yeager and
Pak Chung Sham and
Stephen J. Chanock and
Zhengyuan Xia and
Junwen Wang},
title = {GWASdb v2: an update database for human genetic variants identified
by genome-wide association studies},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {869--876},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1317},
doi = {10.1093/NAR/GKV1317},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiLWWNKYSCXW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiSGP16,
author = {Minghui Li and
Franco L. Simonetti and
Alexander Goncearenco and
Anna R. Panchenko},
title = {MutaBind estimates and interprets the effects of sequence variants
on protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W494--W501},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw374},
doi = {10.1093/NAR/GKW374},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiSGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiSLCHZL16,
author = {Jianrong Li and
Chuan{-}Hu Sun and
Wenyuan Li and
Rou{-}Fang Chao and
Chieh{-}Chen Huang and
Xianghong Jasmine Zhou and
Chun{-}Chi Liu},
title = {Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome
profiling in cancer cells},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {944--951},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1282},
doi = {10.1093/NAR/GKV1282},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiSLCHZL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LichtenbergHMKH16,
author = {Jens Lichtenberg and
Elisabeth F. Heuston and
Tejaswini Mishra and
Cheryl A. Keller and
Ross C. Hardison and
David M. Bodine},
title = {SBR-Blood: systems biology repository for hematopoietic cells},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {925--931},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1263},
doi = {10.1093/NAR/GKV1263},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LichtenbergHMKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LihCCCLCCHS16,
author = {T. Mamie Lih and
Wai{-}Kok Choong and
Chen{-}Chun Chen and
Cheng{-}Wei Cheng and
Hsin{-}Nan Lin and
Ching{-}Tai Chen and
Hui{-}Yin Chang and
Wen{-}Lian Hsu and
Ting{-}Yi Sung},
title = {MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein
identification},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W575--W580},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw254},
doi = {10.1093/NAR/GKW254},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LihCCCLCCHS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ListADDMB16,
author = {Markus List and
Nicolas Alcaraz and
Martin Dissing{-}Hansen and
Henrik J. Ditzel and
Jan Mollenhauer and
Jan Baumbach},
title = {KeyPathwayMinerWeb: online multi-omics network enrichment},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W98--W104},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw373},
doi = {10.1093/NAR/GKW373},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ListADDMB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuLSACLWHHCLH16,
author = {Yu{-}Chen Liu and
Jianrong Li and
Chuan{-}Hu Sun and
Erik Andrews and
Rou{-}Fang Chao and
Feng{-}Mao Lin and
Shun{-}Long Weng and
Sheng{-}Da Hsu and
Chieh{-}Chen Huang and
Chao Cheng and
Chun{-}Chi Liu and
Hsien{-}Da Huang},
title = {CircNet: a database of circular RNAs derived from transcriptome sequencing
data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {209--215},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv940},
doi = {10.1093/NAR/GKV940},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiuLSACLWHHCLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Lopez-BlancoCLC16,
author = {Jos{\'{e}} Ram{\'{o}}n L{\'{o}}pez{-}Blanco and
Alejandro Jes{\'{u}}s Canosa{-}Valls and
Yaohang Li and
Pablo Chac{\'{o}}n},
title = {{RCD+:} Fast loop modeling server},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W395--W400},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw395},
doi = {10.1093/NAR/GKW395},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Lopez-BlancoCLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Lopez-IbanezPC16,
author = {Javier L{\'{o}}pez{-}Ib{\'{a}}{\~{n}}ez and
Florencio Pazos and
Monica Chagoyen},
title = {{MBROLE} 2.0 - functional enrichment of chemical compounds},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W201--W204},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw253},
doi = {10.1093/NAR/GKW253},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Lopez-IbanezPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LoweC16,
author = {Todd M. Lowe and
Patricia P. Chan},
title = {tRNAscan-SE On-line: integrating search and context for analysis of
transfer {RNA} genes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W54--W57},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw413},
doi = {10.1093/NAR/GKW413},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LoweC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuaWKWVML16,
author = {Rhonald C. Lua and
Stephen J. Wilson and
Daniel M. Konecki and
Angela D. Wilkins and
Eric Venner and
Daniel H. Morgan and
Olivier Lichtarge},
title = {{UET:} a database of evolutionarily-predicted functional determinants
of protein sequences that cluster as functional sites in protein structures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {308--312},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1279},
doi = {10.1093/NAR/GKV1279},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LuaWKWVML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MagnusBDB16,
author = {Marcin Magnus and
Michal J. Boniecki and
Wayne Dawson and
Janusz M. Bujnicki},
title = {SimRNAweb: a web server for {RNA} 3D structure modeling with optional
restraints},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W315--W319},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw279},
doi = {10.1093/NAR/GKW279},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MagnusBDB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MalhisJG16,
author = {Nawar Malhis and
Matthew Jacobson and
J{\"{o}}rg Gsponer},
title = {MoRFchibi {SYSTEM:} software tools for the identification of MoRFs
in protein sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W488--W493},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw409},
doi = {10.1093/NAR/GKW409},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MalhisJG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaoXLLTCS16,
author = {Fengbiao Mao and
Luoyuan Xiao and
Xianfeng Li and
Jialong Liang and
Huajing Teng and
Wanshi Cai and
Zhongsheng Sun},
title = {RBP-Var: a database of functional variants involved in regulation
mediated by RNA-binding proteins},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {154--163},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1308},
doi = {10.1093/NAR/GKV1308},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MaoXLLTCS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MariethozKACKPM16,
author = {Julien Mariethoz and
Khaled Khatib and
Davide Alocci and
Matthew P. Campbell and
Niclas G. Karlsson and
Nicolle H. Packer and
Elaine H. Mullen and
Fr{\'{e}}d{\'{e}}rique Lisacek},
title = {SugarBindDB, a resource of glycan-mediated host-pathogen interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1243--1250},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1247},
doi = {10.1093/NAR/GKV1247},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MariethozKACKPM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MashimaKKFKNOKO16,
author = {Jun Mashima and
Yuichi Kodama and
Takehide Kosuge and
Takatomo Fujisawa and
Toshiaki Katayama and
Hideki Nagasaki and
Yoshihiro Okuda and
Eli Kaminuma and
Osamu Ogasawara and
Kousaku Okubo and
Yasukazu Nakamura and
Toshihisa Takagi},
title = {{DNA} data bank of Japan {(DDBJ)} progress report},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {51--57},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1105},
doi = {10.1093/NAR/GKV1105},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MashimaKKFKNOKO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MathelierFACDLS16,
author = {Anthony Mathelier and
Oriol Fornes and
David J. Arenillas and
Chih{-}Yu Chen and
Gr{\'{e}}goire Denay and
Jessica J. Y. Lee and
Wenqiang Shi and
Casper Shyr and
Ge Tan and
Rebecca Worsley{-}Hunt and
Allen W. Zhang and
Fran{\c{c}}ois Parcy and
Boris Lenhard and
Albin Sandelin and
Wyeth W. Wasserman},
title = {{JASPAR} 2016: a major expansion and update of the open-access database
of transcription factor binding profiles},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {110--115},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1176},
doi = {10.1093/NAR/GKV1176},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MathelierFACDLS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Members16,
title = {The {SIB} Swiss Institute of Bioinformatics' resources: focus on curated
databases},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {27--37},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1310},
doi = {10.1093/NAR/GKV1310},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Members16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiPMCT16,
author = {Huaiyu Mi and
Sagar Poudel and
Anushya Muruganujan and
John T. Casagrande and
Paul D. Thomas},
title = {{PANTHER} version 10: expanded protein families and functions, and
analysis tools},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {336--342},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1194},
doi = {10.1093/NAR/GKV1194},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiPMCT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiaoW16,
author = {Zhichao Miao and
Eric Westhof},
title = {RBscore{\&}NBench: a high-level web server for nucleic acid binding
residues prediction with a large-scale benchmarking database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W562--W567},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw251},
doi = {10.1093/NAR/GKW251},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiaoW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MichnaZMS16,
author = {Raphael H. Michna and
Bingyao Zhu and
Ulrike M{\"{a}}der and
J{\"{o}}rg St{\"{u}}lke},
title = {\emph{Subti}Wiki 2.0 - an integrated database for the model organism
\emph{Bacillus subtilis}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {654--662},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1006},
doi = {10.1093/NAR/GKV1006},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MichnaZMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellBCDHFPP16,
author = {Alex L. Mitchell and
Fran{\c{c}}ois Bucchini and
Guy Cochrane and
Hubert Denise and
Petra ten Hoopen and
Matthew Fraser and
Sebastien Pesseat and
Simon C. Potter and
Maxim Scheremetjew and
Peter Sterk and
Robert D. Finn},
title = {{EBI} metagenomics in 2016 - an expanding and evolving resource for
the analysis and archiving of metagenomic data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {595--603},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1195},
doi = {10.1093/NAR/GKV1195},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MitchellBCDHFPP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorettiMTBMP16,
author = {S{\'{e}}bastien Moretti and
Olivier Martin and
T. Van Du Tran and
Alan J. Bridge and
Anne Morgat and
Marco Pagni},
title = {MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions
to bring together genome-scale metabolic networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {523--526},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1117},
doi = {10.1093/NAR/GKV1117},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MorettiMTBMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorettoSDBBLGGR16,
author = {Marco Moretto and
Paolo Sonego and
Nicolas Dierckxsens and
Matteo Brilli and
Luca Bianco and
Daniela Ledezma{-}Tejeida and
Socorro Gama{-}Castro and
Marco Galardini and
Chiara Romualdi and
Kris Laukens and
Julio Collado{-}Vides and
Pieter Meysman and
Kristof Engelen},
title = {{COLOMBOS} v3.0: leveraging gene expression compendia for cross-species
analyses},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {620--623},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1251},
doi = {10.1093/NAR/GKV1251},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MorettoSDBBLGGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MoskalevZSDGKPJ16,
author = {Alexey Moskalev and
Svetlana Zhikrivetskaya and
Mikhail Shaposhnikov and
Evgenia Dobrovolskaya and
Roman Gurinovich and
Oleg Kuryan and
Aleksandr Pashuk and
Leslie C. Jellen and
Alex Aliper and
Alex Peregudov and
Alex Zhavoronkov},
title = {Aging Chart: a community resource for rapid exploratory pathway analysis
of age-related processes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {894--899},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1287},
doi = {10.1093/NAR/GKV1287},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MoskalevZSDGKPJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NarangDC16,
author = {Pankaj Narang and
Parashar Dhapola and
Shantanu Chowdhury},
title = {BreCAN-DB: a repository cum browser of personalized {DNA} breakpoint
profiles of cancer genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {952--958},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1264},
doi = {10.1093/NAR/GKV1264},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NarangDC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NingZWZWLGGYWL16,
author = {Shangwei Ning and
Jizhou Zhang and
Peng Wang and
Hui Zhi and
Jianjian Wang and
Yue Liu and
Yue Gao and
Maoni Guo and
Ming Yue and
Lihua Wang and
Xia Li},
title = {Lnc2Cancer: a manually curated database of experimentally supported
lncRNAs associated with various human cancers},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {980--985},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1094},
doi = {10.1093/NAR/GKV1094},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NingZWZWLGGYWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OLearyWBCHMRRSA16,
author = {Nuala A. O'Leary and
Mathew W. Wright and
J. Rodney Brister and
Stacy Ciufo and
Diana Haddad and
Richard McVeigh and
Bhanu Rajput and
Barbara Robbertse and
Brian Smith{-}White and
Danso Ako{-}Adjei and
Alexander Astashyn and
Azat Badretdin and
Yiming Bao and
Olga Blinkova and
Vyacheslav Brover and
Vyacheslav Chetvernin and
Jinna Choi and
Eric Cox and
Olga D. Ermolaeva and
Catherine M. Farrell and
Tamara Goldfarb and
Tripti Gupta and
Daniel H. Haft and
Eneida Hatcher and
Wratko Hlavina and
Vinita S. Joardar and
Vamsi K. Kodali and
Wenjun Li and
Donna R. Maglott and
Patrick Masterson and
Kelly M. McGarvey and
Michael R. Murphy and
Kathleen O'Neill and
Shashikant Pujar and
Sanjida H. Rangwala and
Daniel Rausch and
Lillian D. Riddick and
Conrad L. Schoch and
Andrei Shkeda and
Susan S. Storz and
Hanzhen Sun and
Fran{\c{c}}oise Thibaud{-}Nissen and
Igor Tolstoy and
Raymond E. Tully and
Anjana R. Vatsan and
Craig Wallin and
David Webb and
Wendy Wu and
Melissa J. Landrum and
Avi Kimchi and
Tatiana A. Tatusova and
Michael DiCuccio and
Paul A. Kitts and
Terence D. Murphy and
Kim D. Pruitt},
title = {Reference sequence (RefSeq) database at {NCBI:} current status, taxonomic
expansion, and functional annotation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {733--745},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1189},
doi = {10.1093/NAR/GKV1189},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OLearyWBCHMRRSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Obarska-Kosinska16,
author = {Agnieszka Obarska{-}Kosinska and
Alfredo Iacoangeli and
Rosalba Lepore and
Anna Tramontano},
title = {PepComposer: computational design of peptides binding to a given protein
surface},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W522--W528},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw366},
doi = {10.1093/NAR/GKW366},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Obarska-Kosinska16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OgrisHS16,
author = {Christoph Ogris and
Thomas Helleday and
Erik L. L. Sonnhammer},
title = {PathwAX: a web server for network crosstalk based pathway annotation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W105--W109},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw356},
doi = {10.1093/NAR/GKW356},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OgrisHS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OlexioukCVVMM16,
author = {Volodimir Olexiouk and
Jeroen Crapp{\'{e}} and
Steven Verbruggen and
Kenneth Verheggen and
Lennart Martens and
Gerben Menschaert},
title = {sORFs.org: a repository of small ORFs identified by ribosome profiling},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {324--329},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1175},
doi = {10.1093/NAR/GKV1175},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OlexioukCVVMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OliverosFTSMCP16,
author = {Juan C. Oliveros and
M{\`{o}}nica Franch and
Daniel Tabas{-}Madrid and
David San{-}Le{\'{o}}n and
Lluis Montoliu and
Pilar Cubas and
Florencio Pazos},
title = {Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments
for {ENSEMBL} genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W267--W271},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw407},
doi = {10.1093/NAR/GKW407},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OliverosFTSMCP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PancsaVTV16,
author = {Rita Pancsa and
Mihaly Varadi and
Peter Tompa and
Wim F. Vranken},
title = {Start2Fold: a database of hydrogen/deuterium exchange data on protein
folding and stability},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {429--434},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1185},
doi = {10.1093/NAR/GKV1185},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PancsaVTV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapadatosDDCGSK16,
author = {George Papadatos and
Mark Davies and
Nathan Dedman and
Jon Chambers and
Anna Gaulton and
James Siddle and
Richard Koks and
Sean A. Irvine and
Joe Pettersson and
Nicholas T. Goncharoff and
Anne Hersey and
John P. Overington},
title = {SureChEMBL: a large-scale, chemically annotated patent document database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1220--1228},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1253},
doi = {10.1093/NAR/GKV1253},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapadatosDDCGSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Paraskevopoulou16,
author = {Maria D. Paraskevopoulou and
Ioannis S. Vlachos and
Dimitra Karagkouni and
Georgios K. Georgakilas and
Ilias Kanellos and
Thanasis Vergoulis and
Konstantinos Zagganas and
Panayiotis Tsanakas and
Evangelos Floros and
Theodore Dalamagas and
Artemis G. Hatzigeorgiou},
title = {DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {231--238},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1270},
doi = {10.1093/NAR/GKV1270},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Paraskevopoulou16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkJRTX16,
author = {Juw Won Park and
Sungbo Jung and
Eric C. Rouchka and
Yu{-}Ting Tseng and
Yi Xing},
title = {rMAPS: {RNA} map analysis and plotting server for alternative exon
regulation},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W333--W338},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw410},
doi = {10.1093/NAR/GKW410},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParkJRTX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkKSUN16,
author = {Sung{-}Joon Park and
Yusuke Komiyama and
Hirofumi Suemori and
Akihiro Umezawa and
Kenta Nakai},
title = {OpenTein: a database of digital whole-slide images of stem cell-derived
teratomas},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1000--1004},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1096},
doi = {10.1093/NAR/GKV1096},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ParkKSUN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParraSRTGWF16,
author = {R. Gonzalo Parra and
Nicholas P. Schafer and
Leandro G. Radusky and
Min{-}Yeh Tsai and
A. Brenda Guzovsky and
Peter G. Wolynes and
Diego U. Ferreiro},
title = {Protein Frustratometer 2: a tool to localize energetic frustration
in protein molecules, now with electrostatics},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W356--W360},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw304},
doi = {10.1093/NAR/GKW304},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParraSRTGWF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PazKBM16,
author = {Inbal Paz and
Efrat Kligun and
Barak Bengad and
Yael Mandel{-}Gutfreund},
title = {BindUP: a web server for non-homology-based prediction of {DNA} and
{RNA} binding proteins},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W568--W574},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw454},
doi = {10.1093/NAR/GKW454},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PazKBM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PeabodyLVLB16,
author = {Michael A. Peabody and
Matthew R. Laird and
Caitlyn Vlasschaert and
Raymond Lo and
Fiona S. L. Brinkman},
title = {PSORTdb: expanding the bacteria and archaea protein subcellular localization
database to better reflect diversity in cell envelope structures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {663--668},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1271},
doi = {10.1093/NAR/GKV1271},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PeabodyLVLB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PedroMUICMSKHK16,
author = {Helder Pedro and
Uma Maheswari and
Martin Urban and
Alistair George Irvine and
Alayne Cuzick and
Mark D. McDowall and
Daniel M. Staines and
Eugene Kulesha and
Kim Elizabeth Hammond{-}Kosack and
Paul Julian Kersey},
title = {PhytoPath: an integrative resource for plant pathogen genomics},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {688--693},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1052},
doi = {10.1093/NAR/GKV1052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PedroMUICMSKHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Perez-SilvaEVQ16,
author = {Jos{\'{e}} G. P{\'{e}}rez{-}Silva and
Yaiza Espa{\~{n}}ol and
Gloria Velasco and
V{\'{\i}}ctor Quesada},
title = {The Degradome database: expanding roles of mammalian proteases in
life and disease},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {351--355},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1201},
doi = {10.1093/NAR/GKV1201},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Perez-SilvaEVQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PerfettoBCPILLM16,
author = {Livia Perfetto and
Leonardo Briganti and
Alberto Calderone and
Andrea Cerquone Perpetuini and
Marta Iannuccelli and
Francesca Langone and
Luana Licata and
Milica Marinkovic and
Anna Mattioni and
Theodora Pavlidou and
Daniele Peluso and
Lucia Lisa Petrilli and
Stefano Pirr{\`{o}} and
Daniela Posca and
Elena Santonico and
Alessandra Silvestri and
Filomena Spada and
Luisa Castagnoli and
Gianni Cesareni},
title = {{SIGNOR:} a database of causal relationships between biological entities},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {548--554},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1048},
doi = {10.1093/NAR/GKV1048},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PerfettoBCPILLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
author = {Robert Petryszak and
Maria Keays and
Y. Amy Tang and
Nuno A. Fonseca and
Elisabet Barrera and
Tony Burdett and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Simon Jupp and
Satu Koskinen and
Oliver Mannion and
Laura Huerta and
Karine Megy and
Catherine Snow and
Eleanor Williams and
Mitra Barzine and
Emma Hastings and
Hendrik Weisser and
James C. Wright and
Pankaj Jaiswal and
Wolfgang Huber and
Jyoti Choudhary and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - an integrated database of gene and protein
expression in humans, animals and plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {746--752},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1045},
doi = {10.1093/NAR/GKV1045},
timestamp = {Tue, 26 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanMT16,
author = {Damiano Piovesan and
Giovanni Minervini and
Silvio C. E. Tosatto},
title = {The {RING} 2.0 web server for high quality residue interaction networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W367--W374},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw315},
doi = {10.1093/NAR/GKW315},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiovesanMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiresA16,
author = {Douglas E. V. Pires and
David B. Ascher},
title = {mCSM-AB: a web server for predicting antibody-antigen affinity changes
upon mutation with graph-based signatures},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W469--W473},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw458},
doi = {10.1093/NAR/GKW458},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiresA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiresA16a,
author = {Douglas E. V. Pires and
David B. Ascher},
title = {CSM-lig: a web server for assessing and comparing protein-small molecule
affinities},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W557--W561},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw390},
doi = {10.1093/NAR/GKW390},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiresA16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PirtskhalavaGCG16,
author = {Malak Pirtskhalava and
Andrei E. Gabrielian and
Phillip Cruz and
Hannah L. Griggs and
R. Burke Squires and
Darrell E. Hurt and
Maia Grigolava and
Mindia Chubinidze and
George Gogoladze and
Boris Vishnepolsky and
Vsevolod Alekseev and
Alex Rosenthal and
Michael Tartakovsky},
title = {{DBAASP} v.2: an enhanced database of structure and antimicrobial/cytotoxic
activity of natural and synthetic peptides},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1104--1112},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1174},
doi = {10.1093/NAR/GKV1174},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PirtskhalavaGCG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Pulido-TamayoDM16,
author = {Sergio Pulido{-}Tamayo and
Jorge Duitama and
Kathleen Marchal},
title = {EXPLoRA-web: linkage analysis of quantitative trait loci using bulk
segregant analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W142--W146},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw298},
doi = {10.1093/NAR/GKW298},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Pulido-TamayoDM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RajputKK16,
author = {Akanksha Rajput and
Karambir Kaur and
Manoj Kumar},
title = {SigMol: repertoire of quorum sensing signaling molecules in prokaryotes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {634--639},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1076},
doi = {10.1093/NAR/GKV1076},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RajputKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RamirezRGBKRHDM16,
author = {Fidel Ram{\'{\i}}rez and
Devon Patrick Ryan and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Vivek Bhardwaj and
Fabian Kilpert and
Andreas S. Richter and
Steffen Heyne and
Friederike D{\"{u}}ndar and
Thomas Manke},
title = {deepTools2: a next generation web server for deep-sequencing data
analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W160--W165},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw257},
doi = {10.1093/NAR/GKW257},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RamirezRGBKRHDM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RawlingsBF16,
author = {Neil D. Rawlings and
Alan J. Barrett and
Robert D. Finn},
title = {Twenty years of the \emph{MEROPS} database of proteolytic enzymes,
their substrates and inhibitors},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {343--350},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1118},
doi = {10.1093/NAR/GKV1118},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RawlingsBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ReimandAAKRPV16,
author = {J{\"{u}}ri Reimand and
Tambet Arak and
Priit Adler and
Liis Kolberg and
Sulev Reisberg and
Hedi Peterson and
Jaak Vilo},
title = {g: Profiler - a web server for functional interpretation of gene lists
{(2016} update)},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W83--W89},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw199},
doi = {10.1093/NAR/GKW199},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ReimandAAKRPV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RetwitzerRPWB16,
author = {Matan Drory Retwitzer and
Vladimir Reinharz and
Yann Ponty and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Danny Barash},
title = {incaRNAfbinv: a web server for the fragment-based design of {RNA}
sequences},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W308--W314},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw440},
doi = {10.1093/NAR/GKW440},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RetwitzerRPWB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Ribeiro-Goncalves16,
author = {Bruno Ribeiro{-}Gon{\c{c}}alves and
Alexandre P. Francisco and
C{\'{a}}tia Vaz and
M{\'{a}}rio Ramirez and
Jo{\~{a}}o Andr{\'{e}} Carri{\c{c}}o},
title = {PHYLOViZ Online: web-based tool for visualization, phylogenetic inference,
analysis and sharing of minimum spanning trees},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W246--W251},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw359},
doi = {10.1093/NAR/GKW359},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Ribeiro-Goncalves16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RigdenFG16,
author = {Daniel J. Rigden and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Michael Y. Galperin},
title = {The 2016 database issue of \emph{Nucleic Acids Research} and an updated
molecular biology database collection},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1--6},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1356},
doi = {10.1093/NAR/GKV1356},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RigdenFG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RobertsWFT16,
author = {Andrew M. Roberts and
Aaron K. Wong and
Ian Fisk and
Olga G. Troyanskaya},
title = {{GIANT} {API:} an application programming interface for functional
genomics},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W587--W592},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw289},
doi = {10.1093/NAR/GKW289},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RobertsWFT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RollZSPL16,
author = {James Roll and
Craig L. Zirbel and
Blake A. Sweeney and
Anton I. Petrov and
Neocles Leontis},
title = {{JAR3D} Webserver: Scoring and aligning {RNA} loop sequences to known
3D motifs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W320--W327},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw453},
doi = {10.1093/NAR/GKW453},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RollZSPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Rosenkranz16,
author = {David Rosenkranz},
title = {piRNA cluster database: a web resource for piRNA producing loci},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {223--230},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1265},
doi = {10.1093/NAR/GKV1265},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Rosenkranz16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RuanF16,
author = {Zhi Ruan and
Ye Feng},
title = {BacWGSTdb, a database for genotyping and source tracking bacterial
pathogens},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {682--687},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1004},
doi = {10.1093/NAR/GKV1004},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RuanF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RyanWBASBMW16,
author = {Michael C. Ryan and
Wing Chung Wong and
Robert Brown and
Rehan Akbani and
Xiaoping Su and
Bradley M. Broom and
James M. Melott and
John N. Weinstein},
title = {TCGASpliceSeq a compendium of alternative mRNA splicing in cancer},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1018--1022},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1288},
doi = {10.1093/NAR/GKV1288},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RyanWBASBMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RyuLCLRK16,
author = {Joonghyun Ryu and
Mokwon Lee and
Jehyun Cha and
Roman A. Laskowski and
Seong Eon Ryu and
Deok{-}Soo Kim},
title = {BetaSCPWeb: side-chain prediction for protein structures using Voronoi
diagrams and geometry prioritization},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W416--W423},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw368},
doi = {10.1093/NAR/GKW368},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RyuLCLRK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SaierRTALM16,
author = {Milton H. Saier Jr. and
Vamsee S. Reddy and
Brian V. Tsu and
Muhammad Saad Ahmed and
Chun Li and
Gabriel Moreno{-}Hagelsieb},
title = {The Transporter Classification Database {(TCDB):} recent advances},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {372--379},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1103},
doi = {10.1093/NAR/GKV1103},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SaierRTALM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SajedMRPGKWGDW16,
author = {Tanvir Sajed and
Ana Marcu and
Miguel Ramirez{-}Gaona and
Allison Pon and
An Chi Guo and
Craig Knox and
Michael Wilson and
Jason R. Grant and
Yannick Djoumbou and
David S. Wishart},
title = {{ECMDB} 2.0: {A} richer resource for understanding the biochemistry
of \emph{E. coli}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {495--501},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1060},
doi = {10.1093/NAR/GKV1060},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SajedMRPGKWGDW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalavertHACMCCD16,
author = {Francisco Salavert and
Marta R. Hidalgo and
Alicia Amadoz and
Cankut {\c{C}}ubuk and
Ignacio Medina and
Daniel Crespo and
Jos{\'{e}} Carbonell{-}Caballero and
Joaqu{\'{\i}}n Dopazo},
title = {Actionable pathways: interactive discovery of therapeutic targets
using signaling pathway models},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W212--W216},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw369},
doi = {10.1093/NAR/GKW369},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalavertHACMCCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalhiERMBASLMBM16,
author = {Adil Salhi and
Magbubah Essack and
Aleksandar Radovanovic and
Benoit Marchand and
Salim Bougouffa and
Andr{\'{e}} Antunes and
Marta Filipa Sim{\~{o}}es and
Feras F. Lafi and
Olaa A. Motwalli and
Ameerah Bokhari and
Tariq Malas and
Soha Al Amoudi and
Ghofran Othum and
Intikhab Alam and
Katsuhiko Mineta and
Xin Gao and
Robert Hoehndorf and
John A. C. Archer and
Takashi Gojobori and
Vladimir B. Bajic},
title = {{DESM:} portal for microbial knowledge exploration systems},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {624--633},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1147},
doi = {10.1093/NAR/GKV1147},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalhiERMBASLMBM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SantellaKHHDB16,
author = {Anthony Santella and
Ismar Kovacevic and
Laura A. Herndon and
David H. Hall and
Zhuo Du and
Zhirong Bao},
title = {Digital development: a database of cell lineage differentiation in
\emph{C. elegans} with lineage phenotypes, cell-specific gene functions
and a multiscale model},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {781--785},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1119},
doi = {10.1093/NAR/GKV1119},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SantellaKHHDB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SavovaPVG16,
author = {Virginia Savova and
Jon Patsenker and
S{\'{e}}bastien Vigneau and
Alexander A. Gimelbrant},
title = {{NAR} Breakthrough Article: dbMAE: the database of autosomal monoallelic
expression},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {753--756},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1106},
doi = {10.1093/NAR/GKV1106},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SavovaPVG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Schneidman-Duhovny16,
author = {Dina Schneidman{-}Duhovny and
Michal Hammel and
John A. Tainer and
Andrej Sali},
title = {FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural
modeling of proteins and their complexes based on {SAXS} profiles},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W424--W429},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw389},
doi = {10.1093/NAR/GKW389},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Schneidman-Duhovny16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SedanMLS16,
author = {Yuval Sedan and
Orly Marcu and
Sergey Lyskov and
Ora Schueler{-}Furman},
title = {Peptiderive server: derive peptide inhibitors from protein-protein
interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W536--W541},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw385},
doi = {10.1093/NAR/GKW385},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SedanMLS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SeltmannLMSBZKS16,
author = {Stefanie Seltmann and
Fritz Lekschas and
Robert M{\"{u}}ller and
Harald Stachelscheid and
Marie{-}Sophie Bittner and
Weiping Zhang and
Luam Kidane and
Anna Seriola and
Anna Veiga and
Glyn Stacey and
Andreas Kurtz},
title = {hPSCreg - the human pluripotent stem cell registry},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {757--763},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv963},
doi = {10.1093/NAR/GKV963},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SeltmannLMSBZKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SergushichevLJV16,
author = {Alexey A. Sergushichev and
Alexander A. Loboda and
Abhishek Kumar Jha and
Emma E. Vincent and
Edward M. Driggers and
Russell G. Jones and
Edward J. Pearce and
Maxim N. Artyomov},
title = {{GAM:} a web-service for integrated transcriptional and metabolic
network analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W194--W200},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw266},
doi = {10.1093/NAR/GKW266},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SergushichevLJV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShaulYTNMLBS16,
author = {Yoav D. Shaul and
Bingbing Yuan and
Prathapan Thiru and
Andy Nutter{-}Upham and
Scott McCallum and
Carolyn Lanzkron and
George W. Bell and
David M. Sabatini},
title = {{MERAV:} a tool for comparing gene expression across human tissues
and cell types},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {560--566},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1337},
doi = {10.1093/NAR/GKV1337},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShaulYTNMLBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShenWLLLCSYGHHC16,
author = {Qiancheng Shen and
Guanqiao Wang and
Shuai Li and
Xinyi Liu and
Shaoyong Lu and
Zhongjie Chen and
Kun Song and
Junhao Yan and
Lv Geng and
Zhimin Huang and
Wenkang Huang and
Guoqiang Chen and
Jian Zhang},
title = {{ASD} v3.0: unraveling allosteric regulation with structural mechanisms
and biological networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {527--535},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv902},
doi = {10.1093/NAR/GKV902},
timestamp = {Fri, 12 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShenWLLLCSYGHHC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SheppardHESBBCD16,
author = {Travis K. Sheppard and
Benjamin C. Hitz and
Stacia R. Engel and
Giltae Song and
Rama Balakrishnan and
Gail Binkley and
Maria C. Costanzo and
Kyla S. Dalusag and
Janos Demeter and
Sage T. Hellerstedt and
Kalpana Karra and
Robert S. Nash and
Kelley M. Paskov and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
J. Michael Cherry},
title = {The \emph{Saccharomyces} Genome Database Variant Viewer},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {698--702},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1250},
doi = {10.1093/NAR/GKV1250},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SheppardHESBBCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SillitoeF16,
author = {Ian Sillitoe and
Nicholas Furnham},
title = {FunTree: advances in a resource for exploring and contextualising
protein function evolution},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {317--323},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1274},
doi = {10.1093/NAR/GKV1274},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SillitoeF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SinghCDBUGTAMR16,
author = {Sandeep Singh and
Kumardeep Chaudhary and
Sandeep Kumar Dhanda and
Sherry Bhalla and
Salman Sadullah Usmani and
Ankur Gautam and
Abhishek Tuknait and
Piyush Agrawal and
Deepika Mathur and
Gajendra P. S. Raghava},
title = {SATPdb: a database of structurally annotated therapeutic peptides},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1119--1126},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1114},
doi = {10.1093/NAR/GKV1114},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SinghCDBUGTAMR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SiramshettyNOGD16,
author = {Vishal B. Siramshetty and
Janette Nickel and
Christian Omieczynski and
Bj{\"{o}}rn{-}Oliver Gohlke and
Malgorzata N. Drwal and
Robert Preissner},
title = {{WITHDRAWN} - a resource for withdrawn and discontinued drugs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1080--1086},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1192},
doi = {10.1093/NAR/GKV1192},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SiramshettyNOGD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SloanCDMSHGNHLR16,
author = {Cricket A. Sloan and
Esther T. Chan and
Jean M. Davidson and
Venkat S. Malladi and
J. Seth Strattan and
Benjamin C. Hitz and
Idan Gabdank and
Aditi K. Narayanan and
Marcus Ho and
Brian T. Lee and
Laurence D. Rowe and
Timothy R. Dreszer and
Greg Roe and
Nikhil R. Podduturi and
Forrest Tanaka and
Eurie L. Hong and
J. Michael Cherry},
title = {{ENCODE} data at the {ENCODE} portal},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {726--732},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1160},
doi = {10.1093/NAR/GKV1160},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SloanCDMSHGNHLR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SmithR16,
author = {Anthony C. Smith and
Alan J. Robinson},
title = {MitoMiner v3.1, an update on the mitochondrial proteomics database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1258--1261},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1001},
doi = {10.1093/NAR/GKV1001},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SmithR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SohngenPBGVREPO16,
author = {Carola S{\"{o}}hngen and
Adam Podstawka and
Boyke Bunk and
Dorothea Gleim and
Anna Vetcininova and
Lorenz Christian Reimer and
Christian Ebeling and
Cezar Pendarovski and
J{\"{o}}rg Overmann},
title = {Bac\emph{Dive} - The Bacterial Diversity Metadatabase in 2016},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {581--585},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv983},
doi = {10.1093/NAR/GKV983},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SohngenPBGVREPO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SouthanSBFPABDM16,
author = {Christopher Southan and
Joanna L. Sharman and
Helen E. Benson and
Elena Faccenda and
Adam J. Pawson and
Stephen P. H. Alexander and
Oscar Peter Buneman and
Anthony P. Davenport and
John C. McGrath and
John A. Peters and
Michael Spedding and
William A. Catterall and
Doriano Fabbro and
Jamie A. Davies and
NC{-}IUPHAR},
title = {The {IUPHAR/BPS} Guide to {PHARMACOLOGY} in 2016: towards curated
quantitative interactions between 1300 protein targets and 6000 ligands},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1054--1068},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1037},
doi = {10.1093/NAR/GKV1037},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SouthanSBFPABDM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SpannaglNBMSKGM16,
author = {Manuel Spannagl and
Thomas Nussbaumer and
Kai Christian Bader and
Mihaela M. Martis and
Michael Seidel and
Karl G. Kugler and
Heidrun Gundlach and
Klaus F. X. Mayer},
title = {{PGSB} PlantsDB: updates to the database framework for comparative
plant genome research},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1141--1147},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1130},
doi = {10.1093/NAR/GKV1130},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SpannaglNBMSKGM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SpeirZRRPNLLKHH16,
author = {Matthew L. Speir and
Ann S. Zweig and
Kate R. Rosenbloom and
Brian J. Raney and
Benedict Paten and
Parisa Nejad and
Brian T. Lee and
Katrina Learned and
Donna Karolchik and
Angie S. Hinrichs and
Steven G. Heitner and
Rachel A. Harte and
Maximilian Haeussler and
Luvina Guruvadoo and
Pauline A. Fujita and
Christopher Eisenhart and
Mark Diekhans and
Hiram Clawson and
Jonathan Casper and
Galt P. Barber and
David Haussler and
Robert M. Kuhn and
W. James Kent},
title = {The {UCSC} Genome Browser database: 2016 update},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {717--725},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1275},
doi = {10.1093/NAR/GKV1275},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SpeirZRRPNLLKHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SriyudthsakMAH16,
author = {Kansuporn Sriyudthsak and
Ramon Francisco Pacquiao Mejia and
Masanori Arita and
Masami Y. Hirai},
title = {PASMet: a web-based platform for prediction, modelling and analyses
of metabolic systems},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W205--W211},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw415},
doi = {10.1093/NAR/GKW415},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SriyudthsakMAH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SteinbissSBFHBO16,
author = {Sascha Steinbiss and
Fatima Silva{-}Franco and
Brian P. Brunk and
Bernardo Foth and
Christiane Hertz{-}Fowler and
Matthew Berriman and
Thomas D. Otto},
title = {Companion: a web server for annotation and analysis of parasite genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W29--W34},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw292},
doi = {10.1093/NAR/GKW292},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SteinbissSBFHBO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SudFCAVBEFHNSS16,
author = {Manish Sud and
Eoin Fahy and
Dawn Cotter and
Kenan Azam and
Ilango Vadivelu and
Charles F. Burant and
Arthur Edison and
Oliver Fiehn and
Richard M. Higashi and
K. Sreekumaran Nair and
Susan Sumner and
Shankar Subramaniam},
title = {Metabolomics Workbench: An international repository for metabolomics
data and metadata, metabolite standards, protocols, tutorials and
training, and analysis tools},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {463--470},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1042},
doi = {10.1093/NAR/GKV1042},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SudFCAVBEFHNSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheXTDBHWDA16,
author = {Dinanath Sulakhe and
Bingqing Xie and
Andrew Taylor and
Mark D'Souza and
Sandhya Balasubramanian and
Somaye Hashemifar and
Steven White and
Utpal J. Dave and
Gady Agam and
Jinbo Xu and
Sheng Wang and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx: a knowledge base and an analytical workbench for integrative
medicine},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {882--887},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1257},
doi = {10.1093/NAR/GKV1257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheXTDBHWDA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SunLLWZQY16,
author = {Wen{-}Ju Sun and
Jun{-}Hao Li and
Shun Liu and
Jie Wu and
Hui Zhou and
Liang{-}Hu Qu and
Jian{-}Hua Yang},
title = {RMBase: a resource for decoding the landscape of {RNA} modifications
from high-throughput sequencing data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {259--265},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1036},
doi = {10.1093/NAR/GKV1036},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SunLLWZQY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SunseriK16,
author = {Jocelyn Sunseri and
David Ryan Koes},
title = {Pharmit: interactive exploration of chemical space},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W442--W448},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw287},
doi = {10.1093/NAR/GKW287},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SunseriK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzalajMWTKMRP16,
author = {Przemyslaw Szalaj and
Paul J. Michalski and
Przemyslaw Wr{\'{o}}blewski and
Zhonghui Tang and
Michal Kadlof and
Giovanni Mazzocco and
Yijun Ruan and
Dariusz Plewczynski},
title = {3D-GNOME: an integrated web service for structural modeling of the
3D genome},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W288--W293},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw437},
doi = {10.1093/NAR/GKW437},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SzalajMWTKMRP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykMCLVS16,
author = {Radek Szklarczyk and
Wout Megchelenbrink and
Pavel Cizek and
Marie Ledent and
Gonny Velemans and
Damian Szklarczyk and
Martijn A. Huynen},
title = {WeGET: predicting new genes for molecular systems by weighted co-expression},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {567--573},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1228},
doi = {10.1093/NAR/GKV1228},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SzklarczykMCLVS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykSMJBK16,
author = {Damian Szklarczyk and
Alberto Santos and
Christian von Mering and
Lars Juhl Jensen and
Peer Bork and
Michael Kuhn},
title = {{STITCH} 5: augmenting protein-chemical interaction networks with
tissue and affinity data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {380--384},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1277},
doi = {10.1093/NAR/GKV1277},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SzklarczykSMJBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzymanskiZBEK16,
author = {Maciej Szymanski and
Andrzej Zielezinski and
Jan Barciszewski and
Volker A. Erdmann and
Wojciech M. Karlowski},
title = {5SRNAdb: an information resource for 5S ribosomal RNAs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {180--183},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1081},
doi = {10.1093/NAR/GKV1081},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SzymanskiZBEK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TanramlukNAGC16,
author = {Duangrudee Tanramluk and
Lalita Narupiyakul and
Ruj Akavipat and
Sungsam Gong and
Varodom Charoensawan},
title = {{MANORAA} (Mapping Analogous Nuclei Onto Residue And Affinity) for
identifying protein-ligand fragment interaction, pathways and SNPs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W514--W521},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw314},
doi = {10.1093/NAR/GKW314},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TanramlukNAGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TavTPT16,
author = {Christophe Tav and
S{\'{e}}bastien Tempel and
Laurent Poligny and
Fariza Tahi},
title = {miRNAFold: a web server for fast miRNA precursor prediction in genomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W181--W184},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw459},
doi = {10.1093/NAR/GKW459},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/TavTPT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizSWPON16,
author = {Marcela K. Tello{-}Ruiz and
Joshua C. Stein and
Sharon Wei and
Justin Preece and
Andrew Olson and
Sushma Naithani and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Yinping Jiao and
Joseph Mulvaney and
Sunita Kumari and
Kapeel Chougule and
Justin Elser and
Bo Wang and
James Thomason and
Daniel M. Bolser and
Arnaud Kerhornou and
Brandon Walts and
Nuno A. Fonseca and
Laura Huerta and
Maria Keays and
Y. Amy Tang and
Helen E. Parkinson and
Antonio Fabregat and
Sheldon J. McKay and
Joel Weiser and
Peter D'Eustachio and
Lincoln Stein and
Robert Petryszak and
Paul J. Kersey and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2016: comparative plant genomics and pathway resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1133--1140},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1179},
doi = {10.1093/NAR/GKV1179},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizSWPON16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TorenBTLMF16,
author = {Dmitri Toren and
Thomer Barzilay and
Robi Tacutu and
Gilad Lehmann and
Khachik K. Muradian and
Vadim E. Fraifeld},
title = {MitoAge: a database for comparative analysis of mitochondrial DNA,
with a special focus on animal longevity},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1262--1265},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1187},
doi = {10.1093/NAR/GKV1187},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TorenBTLMF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ToukachE16,
author = {Philip V. Toukach and
Ksenia S. Egorova},
title = {Carbohydrate structure database merged from bacterial, archaeal, plant
and fungal parts},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1229--1236},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv840},
doi = {10.1093/NAR/GKV840},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ToukachE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TrancheventAEAA16,
author = {L{\'{e}}on{-}Charles Tranchevent and
Amin Ardeshirdavani and
Sarah ElShal and
Daniel Alcaide and
Jan Aerts and
Didier Auboeuf and
Yves Moreau},
title = {Candidate gene prioritization with Endeavour},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W117--W121},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw365},
doi = {10.1093/NAR/GKW365},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TrancheventAEAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TrifinopoulosNH16,
author = {Jana Trifinopoulos and
Lam{-}Tung Nguyen and
Arndt von Haeseler and
Bui Quang Minh},
title = {{W-IQ-TREE:} a fast online phylogenetic tool for maximum likelihood
analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W232--W235},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw256},
doi = {10.1093/NAR/GKW256},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TrifinopoulosNH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TymMCRSAA16,
author = {Joseph E. Tym and
Costas Mitsopoulos and
Elizabeth A. Coker and
Parisa Razaz and
Amanda C. Schierz and
Albert A. Antolin and
Bissan Al{-}Lazikani},
title = {canSAR: an updated cancer research and drug discovery knowledgebase},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {938--943},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1030},
doi = {10.1093/NAR/GKV1030},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TymMCRSAA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VarshneyZPAFSCM16,
author = {Gaurav K. Varshney and
Suiyuan Zhang and
Wuhong Pei and
Ashrifia Adomako{-}Ankomah and
Jacob Fohtung and
Katherine Schaffer and
Blake Carrington and
Anoo Maskeri and
Claire Slevin and
Tyra G. Wolfsberg and
Johan Ledin and
Raman Sood and
Shawn M. Burgess},
title = {CRISPRz: a database of zebrafish validated sgRNAs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {822--826},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv998},
doi = {10.1093/NAR/GKV998},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VarshneyZPAFSCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VelankarGABBCDG16,
author = {Sameer Velankar and
Glen van Ginkel and
Younes Alhroub and
Gary M. Battle and
John M. Berrisford and
Matthew J. Conroy and
Jose M. Dana and
Swanand P. Gore and
Aleksandras Gutmanas and
Pauline Haslam and
Pieter M. S. Hendrickx and
Ingvar C. Lagerstedt and
Saqib Mir and
Manuel A. Fernandez Montecelo and
Abhik Mukhopadhyay and
Thomas J. Oldfield and
Ardan Patwardhan and
Eduardo Sanz{-}Garc{\'{\i}}a and
Sanchayita Sen and
Robert A. Slowley and
Michael E. Wainwright and
Mandar S. Deshpande and
Andrii Iudin and
Gaurav Sahni and
Jos{\'{e}} Salavert Torres and
Miriam Hirshberg and
Lora Mak and
Nurul Nadzirin and
David R. Armstrong and
Alice R. Clark and
Oliver S. Smart and
Paul K. Korir and
Gerard J. Kleywegt},
title = {PDBe: improved accessibility of macromolecular structure data from
{PDB} and {EMDB}},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {385--395},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1047},
doi = {10.1093/NAR/GKV1047},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VelankarGABBCDG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VeltriWC16,
author = {Daniel Veltri and
Martha Malapi Wight and
Jo Anne Crouch},
title = {SimpleSynteny: a web-based tool for visualization of microsynteny
across multiple species},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W41--W45},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw330},
doi = {10.1093/NAR/GKW330},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VeltriWC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VizcainoCdDGLMP16,
author = {Juan Antonio Vizca{\'{\i}}no and
Attila Csordas and
Noemi del{-}Toro and
Jos{\'{e}} A. Dianes and
Johannes Griss and
Ilias Lavidas and
Gerhard Mayer and
Yasset P{\'{e}}rez{-}Riverol and
Florian Reisinger and
Tobias Ternent and
Qing{-}Wei Xu and
Rui Wang and
Henning Hermjakob},
title = {2016 update of the {PRIDE} database and its related tools},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {447--456},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1145},
doi = {10.1093/NAR/GKV1145},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VizcainoCdDGLMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VlachosVPLGGCKC16,
author = {Ioannis S. Vlachos and
Thanasis Vergoulis and
Maria D. Paraskevopoulou and
Filopoimin Lykokanellos and
Georgios K. Georgakilas and
Penny Georgiou and
Serafeim Chatzopoulos and
Dimitra Karagkouni and
Foteini Christodoulou and
Theodore Dalamagas and
Artemis G. Hatzigeorgiou},
title = {DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors
with crucial roles in {NGS} expression data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W128--W134},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw455},
doi = {10.1093/NAR/GKW455},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VlachosVPLGGCKC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WaghuBGI16,
author = {Faiza Hanif Waghu and
Ram Shankar Barai and
Pratima Gurung and
Susan Idicula{-}Thomas},
title = {CAMP\({}_{\mbox{R3}}\): a database on sequences, structures and signatures
of antimicrobial peptides},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1094--1097},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1051},
doi = {10.1093/NAR/GKV1051},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WaghuBGI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WagnerCASSCKPME16,
author = {Alex H. Wagner and
Adam C. Coffman and
Benjamin J. Ainscough and
Nicholas C. Spies and
Zachary L. Skidmore and
Katie M. Campbell and
Kilannin Krysiak and
Deng Pan and
Joshua F. McMichael and
James M. Eldred and
Jason R. Walker and
Richard K. Wilson and
Elaine R. Mardis and
Malachi Griffith and
Obi L. Griffith},
title = {DGIdb 2.0: mining clinically relevant drug-gene interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1036--1044},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1165},
doi = {10.1093/NAR/GKV1165},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WagnerCASSCKPME16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLLX16,
author = {Sheng Wang and
Wei Li and
Shiwang Liu and
Jinbo Xu},
title = {RaptorX-Property: a web server for protein structure property prediction},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W430--W435},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw306},
doi = {10.1093/NAR/GKW306},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangLLX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLW16,
author = {Guangshun Wang and
Xia Li and
Zhe Wang},
title = {{APD3:} the antimicrobial peptide database as a tool for research
and education},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1087--1093},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1278},
doi = {10.1093/NAR/GKV1278},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLZLWCL16,
author = {Jiang Wang and
Tao Liu and
Bo Zhao and
Qixuan Lu and
Zheng Wang and
Yuan Cao and
Wuju Li},
title = {sRNATarBase 3.0: an updated database for sRNA-target interactions
in bacteria},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {248--253},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1127},
doi = {10.1093/NAR/GKV1127},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangLZLWCL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangLZLX16,
author = {Sheng Wang and
Wei Li and
Renyu Zhang and
Shiwang Liu and
Jinbo Xu},
title = {CoinFold: a web server for protein contact prediction and contact-assisted
protein folding},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W361--W366},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw307},
doi = {10.1093/NAR/GKW307},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangLZLX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WardK16,
author = {Lucas D. Ward and
Manolis Kellis},
title = {HaploReg v4: systematic mining of putative causal variants, cell types,
regulators and target genes for human complex traits and disease},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {877--881},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1340},
doi = {10.1093/NAR/GKV1340},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WardK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeiZSZLWWSWLZ16,
author = {Yanjun Wei and
Shumei Zhang and
Shipeng Shang and
Bin Zhang and
Song Li and
Xinyu Wang and
Fang Wang and
Jianzhong Su and
Qiong Wu and
Hongbo Liu and
Yan Zhang},
title = {{SEA:} a super-enhancer archive},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {172--179},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1243},
doi = {10.1093/NAR/GKV1243},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WeiZSZLWWSWLZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeissensteinerF16,
author = {Hansi Wei{\ss}ensteiner and
Lukas Forer and
Christian Fuchsberger and
Bernd Sch{\"{o}}pf and
Anita Kloss{-}Brandst{\"{a}}tter and
G{\"{u}}nther Specht and
Florian Kronenberg and
Sebastian Sch{\"{o}}nherr},
title = {mtDNA-Server: next-generation sequencing data analysis of human mitochondrial
{DNA} in the cloud},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W64--W69},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw247},
doi = {10.1093/NAR/GKW247},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WeissensteinerF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeissensteinerP16,
author = {Hansi Wei{\ss}ensteiner and
Dominic Pacher and
Anita Kloss{-}Brandst{\"{a}}tter and
Lukas Forer and
G{\"{u}}nther Specht and
Hans{-}J{\"{u}}rgen Bandelt and
Florian Kronenberg and
Antonio Salas and
Sebastian Sch{\"{o}}nherr},
title = {HaploGrep 2: mitochondrial haplogroup classification in the era of
high-throughput sequencing},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W58--W63},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw233},
doi = {10.1093/NAR/GKW233},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WeissensteinerP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WickerLGSLKF16,
author = {J{\"{o}}rg Wicker and
Tim Lorsbach and
Martin G{\"{u}}tlein and
Emanuel Schmid and
Diogo Latino and
Stefan Kramer and
Kathrin Fenner},
title = {enviPath - The environmental contaminant biotransformation pathway
resource},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {502--508},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1229},
doi = {10.1093/NAR/GKV1229},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WickerLGSLKF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilkeBGGHKPTBGC16,
author = {Andreas Wilke and
Jared Bischof and
Wolfgang Gerlach and
Elizabeth M. Glass and
Travis Harrison and
Kevin P. Keegan and
Tobias Paczian and
William L. Trimble and
Saurabh Bagchi and
Ananth Grama and
Somali Chaterji and
Folker Meyer},
title = {The {MG-RAST} metagenomics database and portal in 2015},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {590--594},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1322},
doi = {10.1093/NAR/GKV1322},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WilkeBGGHKPTBGC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilsonMMp16,
author = {Robert L. Wilson and
Christina McGuire and
Timothy Mohun},
title = {Deciphering the mechanisms of developmental disorders: phenotype analysis
of embryos from mutant mouse lines},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {855--861},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1138},
doi = {10.1093/NAR/GKV1138},
timestamp = {Wed, 10 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WilsonMMp16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WinsorGLDSB16,
author = {Geoffrey L. Winsor and
Emma J. Griffiths and
Raymond Lo and
Bhavjinder K. Dhillon and
Julie A. Shay and
Fiona S. L. Brinkman},
title = {Enhanced annotations and features for comparing thousands of \emph{Pseudomonas}
genomes in the Pseudomonas genome database},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {646--653},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1227},
doi = {10.1093/NAR/GKV1227},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WinsorGLDSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuJTAS16,
author = {Chunlei Wu and
Xuefeng Jin and
Ginger Tsueng and
Cyrus Afrasiabi and
Andrew I. Su},
title = {BioGPS: building your own mash-up of gene annotations and expression
profiles},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {313--316},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1104},
doi = {10.1093/NAR/GKV1104},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuJTAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuQHSLLL16,
author = {Yang Wu and
Rihao Qu and
Yiming Huang and
Binbin Shi and
Mengrong Liu and
Yang Li and
Zhi John Lu},
title = {RNAex: an {RNA} secondary structure prediction server enhanced by
high-throughput structure-probing data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W294--W301},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw362},
doi = {10.1093/NAR/GKW362},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuQHSLLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XieNWWLYLRX16,
author = {Shang{-}Qian Xie and
Peng Nie and
Yan Wang and
Hongwei Wang and
Hongyu Li and
Zhilong Yang and
Yizhi Liu and
Jian Ren and
Zhi Xie},
title = {RPFdb: a database for genome wide information of translated mRNA generated
from ribosome profiling},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {254--258},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv972},
doi = {10.1093/NAR/GKV972},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/XieNWWLYLRX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangLOCLC16,
author = {Jian Yang and
Jixiang Liu and
Liang Ouyang and
Yi Chen and
Bo Liu and
Haoyang Cai},
title = {CTLPScanner: a web server for chromothripsis-like pattern detection},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W252--W258},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw434},
doi = {10.1093/NAR/GKW434},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YangLOCLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangQLTZYXCZC16,
author = {Hong Yang and
Chu Qin and
Ying Hong Li and
Lin Tao and
Jin Zhou and
Chun Yan Yu and
Feng Xu and
Zhe Chen and
Feng Zhu and
Yu Zong Chen},
title = {Therapeutic target database update 2016: enriched resource for bench
to clinical drug target and targeted pathway information},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1069--1074},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1230},
doi = {10.1093/NAR/GKV1230},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YangQLTZYXCZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangSCLTLYLL16,
author = {Chung{-}Han Yang and
Cheng{-}Ting Shih and
Kun{-}Tze Chen and
Po{-}Han Lee and
Ping{-}Han Tsai and
Jian{-}Cheng Lin and
Ching{-}Yu Yen and
Tiao{-}Yin Lin and
Chin Lung Lu},
title = {iPARTS2: an improved tool for pairwise alignment of {RNA} tertiary
structures, version 2},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W328--W332},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw412},
doi = {10.1093/NAR/GKW412},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YangSCLTLYLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YatesAABBCCCFGG16,
author = {Andrew D. Yates and
Wasiu A. Akanni and
M. Ridwan Amode and
Daniel Barrell and
Konstantinos Billis and
Denise Carvalho{-}Silva and
Carla A. Cummins and
Peter Clapham and
Stephen Fitzgerald and
Laurent Gil and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Leo Gordon and
Thibaut Hourlier and
Sarah E. Hunt and
Sophie H. Janacek and
Nathan Johnson and
Thomas Juettemann and
Stephen Keenan and
Ilias Lavidas and
Fergal J. Martin and
Thomas Maurel and
William M. McLaren and
Daniel N. Murphy and
Rishi Nag and
Michael Nuhn and
Anne Parker and
Mateus Patricio and
Miguel Pignatelli and
Matthew Rahtz and
Harpreet Singh Riat and
Daniel Sheppard and
Kieron R. Taylor and
Anja Thormann and
Alessandro Vullo and
Steven P. Wilder and
Amonida Zadissa and
Ewan Birney and
Jennifer L. Harrow and
Matthieu Muffato and
Emily Perry and
Magali Ruffier and
Giulietta Spudich and
Stephen J. Trevanion and
Fiona Cunningham and
Bronwen L. Aken and
Daniel R. Zerbino and
Paul Flicek},
title = {Ensembl 2016},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {710--716},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1157},
doi = {10.1093/NAR/GKV1157},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YatesAABBCCCFGG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YinSGWMXLZLZYHL16,
author = {Chuanlin Yin and
Gengyu Shen and
Dianhao Guo and
Shuping Wang and
Xingzhou Ma and
Huamei Xiao and
Jinding Liu and
Zan Zhang and
Ying Liu and
Yiqun Zhang and
Kaixiang Yu and
Shuiqing Huang and
Fei Li},
title = {InsectBase: a resource for insect genomes and transcriptomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {801--807},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1204},
doi = {10.1093/NAR/GKV1204},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YinSGWMXLZLZYHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuVARTG16,
author = {Jinchao Yu and
Marek Vavrusa and
Jessica Andreani and
Julien Rey and
Pierre Tuff{\'{e}}ry and
Rapha{\"{e}}l Gu{\'{e}}rois},
title = {InterEvDock: a docking server to predict the structure of protein-protein
interactions using evolutionary information},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W542--W549},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw340},
doi = {10.1093/NAR/GKW340},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuVARTG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZaneginaKBKAS16,
author = {Olga Zanegina and
Dmitry D. Kirsanov and
Eugene Baulin and
Anna S. Karyagina and
Andrei Alexeevski and
Sergei A. Spirin},
title = {An updated version of {NPIDB} includes new classifications of DNA-protein
complexes and their families},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {144--153},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1339},
doi = {10.1093/NAR/GKV1339},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZaneginaKBKAS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangCZ16,
author = {Yongqing Zhang and
Xiaoyi Cao and
Sheng Zhong},
title = {GeNemo: a search engine for web-based functional genomic data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W122--W127},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw299},
doi = {10.1093/NAR/GKW299},
timestamp = {Wed, 29 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhangCZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangMJ16,
author = {Tao Zhang and
Alexandre P. Marand and
Jiming Jiang},
title = {PlantDHS: a database for DNase {I} hypersensitive sites in plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1148--1153},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv962},
doi = {10.1093/NAR/GKV962},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangMJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangZZBYILS16,
author = {Yuanwei Zhang and
Qiguang Zang and
Huan Zhang and
Rongjun Ban and
Yifan Yang and
Furhan Iqbal and
Ao Li and
Qinghua Shi},
title = {DeAnnIso: a tool for online detection and annotation of isomiRs from
small {RNA} sequencing data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W166--W175},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw427},
doi = {10.1093/NAR/GKW427},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangZZBYILS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhaoKMZZ16,
author = {Min Zhao and
Pora Kim and
Ramkrishna Mitra and
Junfei Zhao and
Zhongming Zhao},
title = {TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor
genes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1023--1031},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1268},
doi = {10.1093/NAR/GKV1268},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhaoKMZZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhaoLFKwHLBSZC16,
author = {Yi Zhao and
Hui Li and
Shuangsang Fang and
Yue Kang and
Wei Wu and
Yajing Hao and
Ziyang Li and
Dechao Bu and
Ninghui Sun and
Michael Q. Zhang and
Runsheng Chen},
title = {{NONCODE} 2016: an informative and valuable data source of long non-coding
RNAs},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {203--208},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1252},
doi = {10.1093/NAR/GKV1252},
timestamp = {Thu, 04 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhaoLFKwHLBSZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhengGB16,
author = {Zejun Zheng and
Alexander Goncearenco and
Igor N. Berezovsky},
title = {Nucleotide binding database {NBDB} - a collection of sequence motifs
with specific protein-ligand interactions},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {301--307},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1124},
doi = {10.1093/NAR/GKV1124},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhengGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhengLWSLWZYQ16,
author = {Ling{-}Ling Zheng and
Jun{-}Hao Li and
Jie Wu and
Wen{-}Ju Sun and
Shun Liu and
Ze{-}Lin Wang and
Hui Zhou and
Jian{-}Hua Yang and
Liang{-}Hu Qu},
title = {deepBase v2.0: identification, expression, evolution and function
of small RNAs, LncRNAs and circular RNAs from deep-sequencing data},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {196--202},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1273},
doi = {10.1093/NAR/GKV1273},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhengLWSLWZYQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhengXLSLWYQ16,
author = {Ling{-}Ling Zheng and
Wei{-}Lin Xu and
Shun Liu and
Wen{-}Ju Sun and
Jun{-}Hao Li and
Jie Wu and
Jian{-}Hua Yang and
Liang{-}Hu Qu},
title = {tRF2Cancer: {A} web server to detect tRNA-derived small {RNA} fragments
(tRFs) and their expression in multiple cancers},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W185--W193},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw414},
doi = {10.1093/NAR/GKW414},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhengXLSLWYQ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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