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2020 – today
- 2021
[j28]Xueyuan Cao
, Stan Pounds:
Gene-set distance analysis (GSDA): a powerful tool for gene-set association analysis. BMC Bioinform. 22(1): 207 (2021)
2010 – 2019
- 2018
- [j27]Xiaotu Ma, Yu Liu, Yanling Liu, Ludmil B. Alexandrov, Michael N. Edmonson, Charles Gawad, Xin Zhou, Yongjin Li, Michael Rusch, John Easton, Robert Huether, Veronica Gonzalez-Pena, Mark R. Wilkinson, Leandro Hermida, Sean Davis, Edgar Sioson, Stanley Pounds, Xueyuan Cao, Rhonda E. Ries, Zhaoming Wang, Xiang Chen, Li Dong, Sharon J. Diskin, Malcolm A. Smith, Jaime M. Guidry Auvil, Paul S. Meltzer, Ching C. Lau, Elizabeth J. Perlman, John M. Maris, Soheil Meshinchi, Stephen P. Hunger, Daniela S. Gerhard, Jinghui Zhang:
Pan-cancer genome and transcriptome analyses of 1, 699 paediatric leukaemias and solid tumours. Nat. 555(7696): 371-376 (2018) - 2017
- [c3]Wenjian Bi, Guolian Kang, Stanley Pounds:
Statistical selection of biological models for genome-wide association analyses. BIBM 2017: 150-157 - [c2]Xueyuan Cao, E. Olusegun George, Mingjuan Wang, Dale B. Armstrong, Cheng Cheng, Susana C. Raimondi, Jeffrey E. Rubnitz, James R. Downing, Mondira Kundu, Stanley Pounds:
POST: A framework for set-based association analysis in high-dimensional data. BIBM 2017: 332-338 - 2016
- [j26]Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains:
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17(S-10) (2016) - [j25]Xueyuan Cao, Kristine R. Crews, James R. Downing, Jatinder Lamba, Stanley Pounds:
CC-PROMISE effectively integrates two forms of molecular data with multiple biologically related endpoints. BMC Bioinform. 17(S-13): 382 (2016) - 2014
- [j24]Iwona Pawlikowska, Gang Wu, Michael N. Edmonson, Zhifa Liu, Tanja Gruber, Jinghui Zhang, Stan Pounds:
The most informative spacing test effectively discovers biologically relevant outliers or multiple modes in expression. Bioinform. 30(10): 1400-1408 (2014) - [j23]Zhifa Liu, Stan Pounds:
An R Package that Automatically Collects and Archives Details for Reproducible Computing. BMC Bioinform. 15: 138 (2014) - 2013
- [j22]Mehmet Kocak, E. Olusegun George, Saumyadipta Pyne, Stanley Pounds:
An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data. Bioinform. 29(2): 182-188 (2013) - [j21]Shengping Yang, Stanley Pounds, Kun Zhang, Zhide Fang:
PAIR: paired allelic log-intensity-ratio-based normalization method for SNP-CGH arrays. Bioinform. 29(3): 299-307 (2013) - [j20]Stan Pounds, Cheng Cheng, Shaoyu Li, Zhifa Liu, Jinghui Zhang, Charles Mullighan:
A genomic random interval model for statistical analysis of genomic lesion data. Bioinform. 29(17): 2088-2095 (2013) - [j19]Nisrine Enyinda, Zhifa Liu, Areg Negatu, Stan Pounds:
Our strategy to achieve and document reproducible computing. BMC Bioinform. 14(S-17): A19 (2013) - [j18]Gang Wu, Iwona Pawlikowska, Tanja Gruber, James R. Downing, Jinghui Zhang, Stan Pounds:
Subgroup and outlier detection analysis. BMC Bioinform. 14(S-17): A2 (2013) - [j17]Stan Pounds, Cuilan Lani Gao:
Empirical Bayesian selection of hypothesis testing procedures for analysis of digital gene expression data. BMC Bioinform. 14(S-17): A21 (2013) - 2011
- [j16]Stan Pounds, Cuilan Lani Gao, Robert A. Johnson, Karen D. Wright, Helen Poppleton, David Finkelstein, Sarah E. S. Leary, Richard J. Gilbertson:
A procedure to statistically evaluate agreement of differential expression for cross-species genomics. Bioinform. 27(15): 2098-2103 (2011) - [j15]Stan Pounds, Xueyuan Cao, Cheng Cheng, Jun J. Yang, Dario Campana, Ching-Hon Pui, William E. Evans, Mary Relling:
Integrated analysis of pharmacologic, clinical and SNP microarray data using Projection Onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing. Int. J. Data Min. Bioinform. 5(2): 143-157 (2011) - 2010
- [j14]Fridtjof Thomas, Stanley Pounds:
A Bayesian change-point algorithm for detecting copy number alteration. BMC Bioinform. 11(S-4): P17 (2010)
2000 – 2009
- 2009
- [j13]Stan Pounds, Cheng Cheng, Charles Mullighan, Susana C. Raimondi, Sheila Shurtleff, James R. Downing:
Reference alignment of SNP microarray signals for copy number analysis of tumors. Bioinform. 25(3): 315-321 (2009) - [j12]Stan Pounds, Cheng Cheng:
Erratum: sample size determination for the false discovery rate. Bioinform. 25(5): 698-699 (2009) - [j11]Stan Pounds, Cheng Cheng, Xueyuan Cao, Kristine R. Crews, William Plunkett, Varsha Gandhi, Jeffrey Rubnitz, Raul C. Ribeiro, James R. Downing, Jatinder Lamba:
PROMISE: a tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables. Bioinform. 25(16): 2013-2019 (2009) - [j10]Stanley Pounds, Shesh N. Rai:
Assumption adequacy averaging as a concept for developing more robust methods for differential gene expression analysis. Comput. Stat. Data Anal. 53(5): 1604-1612 (2009) - [j9]Daniel Hunt, Cheng Cheng, Stanley Pounds:
The beta-binomial distribution for estimating the number of false rejections in microarray gene expression studies. Comput. Stat. Data Anal. 53(5): 1688-1700 (2009) - [c1]Stan Pounds, Xueyuan Cao, Cheng Cheng, Jun J. Yang, Dario Campana, William E. Evans, Ching-Hon Pui, Mary Relling:
Integrated Analysis of Pharmacokinetic, Clinical, and SNP Microarray Data Using Projection onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing. BIBM 2009: 203-209 - 2008
- [j8]Stan Pounds, Cheng Cheng, Wenjian Yang, Arzu Onar, Christine Hartford, Susana C. Raimondi, Mary Relling:
A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data. BMC Bioinform. 9(S-7) (2008) - [j7]Shesh N. Rai, Stanley Pounds:
Robust detection method for differential expression studies. BMC Bioinform. 9(S-7) (2008) - 2006
- [j6]Stan Pounds:
Estimation and control of multiple testing error rates for microarray studies. Briefings Bioinform. 7(1): 25-36 (2006) - [j5]Stan Pounds, Cheng Cheng:
Robust estimation of the false discovery rate. Bioinform. 22(16): 1979-1987 (2006) - 2005
- [j4]Stan Pounds, Cheng Cheng:
Sample size determination for the false discovery rate. Bioinform. 21(23): 4263-4271 (2005) - [j3]Stan Pounds, Cheng Cheng:
Statistical Development and Evaluation of Microarray Gene Expression Data Filters. J. Comput. Biol. 12(4): 482-495 (2005) - 2004
- [j2]Stan Pounds, Cheng Cheng:
Improving false discovery rate estimation. Bioinform. 20(11): 1737-1745 (2004) - 2003
- [j1]Stan Pounds, Stephan W. Morris:
Estimating the Occurrence of False Positives and False Negatives in Microarray Studies by Approximating and Partitioning the Empirical Distribution of P-values. Bioinform. 19(10): 1236-1242 (2003)
Coauthor Index
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