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ORCIDKun-Mao Chao
趙坤茂
Person information
- unicode name: 趙坤茂
- affiliation: National Taiwan University, Taipei, Taiwan
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Books and Theses
- 2009
[b2]Kun-Mao Chao, Louxin Zhang:
Sequence Comparison - Theory and Methods. Computational Biology 7, Springer 2009, ISBN 978-1-84800-319-4, pp. i-xx, 1-209- 2004
- [b1]Bang Ye Wu, Kun-Mao Chao:
Spanning trees and optimization problems. Discrete mathematics and its applications, Chapman & Hall 2004, ISBN 978-1-58488-436-1, pp. I-XV, 1-184
Journal Articles
- 2022
- [j60]Min-Jen Chen
, Kun-Mao Chao:
Proof of a Conjecture About Minimum Spanning Tree Cycle Intersection. Discret. Appl. Math. 321: 19-23 (2022) - 2015
- [j59]Chia-Jung Chang, Takeyuki Tamura, Kun-Mao Chao, Tatsuya Akutsu:
A Fixed-Parameter Algorithm for Detecting a Singleton Attractor in an AND/OR Boolean Network with Bounded Treewidth. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 98-A(1): 384-390 (2015) - 2014
- [j58]Kun-Mao Chao, Tsan-sheng Hsu, D. T. Lee:
Preface Algorithms and Computation (ISAAC 2012). Algorithmica 70(4): 694-695 (2014) - [j57]Chia-Jung Chang, Pei-Lung Chen, Wei-Shiung Yang, Kun-Mao Chao:
A fault-tolerant method for HLA typing with PacBio data. BMC Bioinform. 15: 296 (2014) - [j56]Rung-Ren Lin, Ya-Hui Chang, Kun-Mao Chao:
Locating Valid SLCAs for XML Keyword Search with NOT Semantics. SIGMOD Rec. 43(2): 29-34 (2014) - [j55]Kun-Mao Chao, Tsan-sheng Hsu, D. T. Lee:
Algorithms and Computation (ISAAC 2012). Theor. Comput. Sci. 544: 1-2 (2014) - 2013
- [j54]Kuan-Yu Chen, Kun-Mao Chao:
A Fully Compressed Algorithm for Computing the Edit Distance of Run-Length Encoded Strings. Algorithmica 65(2): 354-370 (2013) - [j53]An-Chiang Chu, Bang Ye Wu, Kun-Mao Chao:
A linear-time algorithm for finding an edge-partition with max-min ratio at most two. Discret. Appl. Math. 161(7-8): 932-943 (2013) - [j52]Kun-Mao Chao, Tsan-sheng Hsu, Der-Tsai Lee:
Guest Editors' Foreword. Int. J. Comput. Geom. Appl. 23(6): 425-426 (2013) - 2012
- [j51]Chia-Jung Chang, Kun-Mao Chao:
Efficient algorithms for local ranking. Inf. Process. Lett. 112(13): 517-522 (2012) - [j50]Kuan-Yu Chen, Ping-Hui Hsu, Kun-Mao Chao:
Efficient retrieval of approximate palindromes in a run-length encoded string. Theor. Comput. Sci. 432: 28-37 (2012) - 2011
- [j49]Cheng-Wei Luo, Hsiao-Fei Liu, Peng-An Chen, Kun-Mao Chao:
Minkowski Sum Selection and Finding. Int. J. Comput. Geom. Appl. 21(3): 283-311 (2011) - [j48]Yi-Ching Chen, Kun-Mao Chao:
On the generalized constrained longest common subsequence problems. J. Comb. Optim. 21(3): 383-392 (2011) - [j47]Matthias Bernt, Kuan-Yu Chen, Ming-Chiang Chen, An-Chiang Chu, Daniel Merkle, Hung-Lung Wang, Kun-Mao Chao, Martin Middendorf:
Finding all sorting tandem duplication random loss operations. J. Discrete Algorithms 9(1): 32-48 (2011) - [j46]Rung-Ren Lin, Ya-Hui Chang, Kun-Mao Chao:
Improving the performance of identifying contributors for XML keyword search. SIGMOD Rec. 40(1): 5-10 (2011) - [j45]Cheng-Wei Luo, Ming-Chiang Chen, Yi-Ching Chen, Roger W. L. Yang, Hsiao-Fei Liu, Kun-Mao Chao:
Linear-Time Algorithms for the Multiple Gene Duplication Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 260-265 (2011) - 2010
- [j44]An-Chiang Chu, Bang Ye Wu, Hung-Lung Wang, Kun-Mao Chao:
A tight bound on the min-ratio edge-partitioning problem of a tree. Discret. Appl. Math. 158(14): 1471-1478 (2010) - [j43]Ping-Hui Hsu, Kuan-Yu Chen, Kun-Mao Chao:
Finding All Approximate Gapped Palindromes. Int. J. Found. Comput. Sci. 21(6): 925-939 (2010) - [j42]Kuan-Yu Chen, Ping-Hui Hsu, Kun-Mao Chao:
Hardness of comparing two run-length encoded strings. J. Complex. 26(4): 364-374 (2010) - 2009
- [j41]Hsiao-Fei Liu, Kun-Mao Chao:
On Locating Disjoint Segments with Maximum Sum of Densities. Algorithmica 54(1): 107-117 (2009) - [j40]Chih-Huai Cheng, Hsiao-Fei Liu, Kun-Mao Chao:
Optimal algorithms for the average-constrained maximum-sum segment problem. Inf. Process. Lett. 109(3): 171-174 (2009) - [j39]Hung-Lung Wang, Bang Ye Wu, Kun-Mao Chao:
The backup 2-center and backup 2-median problems on trees. Networks 53(1): 39-49 (2009) - 2008
- [j38]Bang Ye Wu, Chih-Yuan Hsiao, Kun-Mao Chao:
The Swap Edges of a Multiple-Sources Routing Tree. Algorithmica 50(3): 299-311 (2008) - [j37]Peng-An Chen, Hsiao-Fei Liu, Kun-Mao Chao:
CNVDetector: locating copy number variations using array CGH data. Bioinform. 24(23): 2773-2775 (2008) - [j36]Yao-Ting Huang, Kun-Mao Chao:
A new framework for the selection of tag SNPs by multimarker haplotypes. J. Biomed. Informatics 41(6): 953-961 (2008) - [j35]Hsiao-Fei Liu, Kun-Mao Chao:
Algorithms for finding the weight-constrained k longest paths in a tree and the length-constrained k maximum-sum segments of a sequence. Theor. Comput. Sci. 407(1-3): 349-358 (2008) - [j34]Hung-Lung Wang, Kun-Mao Chao:
The 2-radius and 2-radiian problems on trees. Theor. Comput. Sci. 407(1-3): 524-531 (2008) - 2007
- [j33]Bang Ye Wu, Hung-Lung Wang, Shih Ta Kuan, Kun-Mao Chao:
On the uniform edge-partition of a tree. Discret. Appl. Math. 155(10): 1213-1223 (2007) - [j32]Kuan-Yu Chen, Kun-Mao Chao:
On the range maximum-sum segment query problem. Discret. Appl. Math. 155(16): 2043-2052 (2007) - [j31]Hsiao-Fei Liu, Kun-Mao Chao:
A tight analysis of the Katriel-Bodlaender algorithm for online topological ordering. Theor. Comput. Sci. 389(1-2): 182-189 (2007) - 2006
- [j30]Chia-Jung Chang, Yao-Ting Huang, Kun-Mao Chao:
A greedier approach for finding tag SNPs. Bioinform. 22(6): 685-691 (2006) - [j29]Chih-Huai Cheng, Kuan-Yu Chen, Wen-Chin Tien, Kun-Mao Chao:
Improved algorithms for the k maximum-sums problems. Theor. Comput. Sci. 362(1-3): 162-170 (2006) - 2005
- [j28]Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao:
Selecting additional tag SNPs for tolerating missing data in genotyping. BMC Bioinform. 6: 263 (2005) - [j27]I-Hsuan Yang, Chien-Pin Huang, Kun-Mao Chao:
A fast algorithm for computing a longest common increasing subsequence. Inf. Process. Lett. 93(5): 249-253 (2005) - [j26]Kuan-Yu Chen, Kun-Mao Chao:
Optimal algorithms for locating the longest and shortest segments satisfying a sum or an average constraint. Inf. Process. Lett. 96(6): 197-201 (2005) - [j25]Yao-Ting Huang, Kun-Mao Chao, Ting Chen:
An Approximation Algorithm for Haplotype Inference by Maximum Parsimony. J. Comput. Biol. 12(10): 1261-1274 (2005) - [j24]Rung-Ren Lin, Wen-Hsiung Kuo, Kun-Mao Chao:
Finding a Length-Constrained Maximum-Density Path in a Tree. J. Comb. Optim. 9(2): 147-156 (2005) - 2004
- [j23]Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao:
Efficient combination of multiple word models for improved sequence comparison. Bioinform. 20(16): 2529-2533 (2004) - [j22]Hsiao-Fei Liu, Ya-Hui Chang, Kun-Mao Chao:
An Optimal Algorithm for Querying Tree Structures and its Applications in Bioinformatics. SIGMOD Rec. 33(2): 21-26 (2004) - 2003
- [j21]Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao:
MAVG: locating non-overlapping maximum average segments in a given sequence. Bioinform. 19(1): 151-152 (2003) - [j20]Xiaoqiu Huang, Kun-Mao Chao:
A generalized global alignment algorithm. Bioinform. 19(2): 228-233 (2003) - [j19]Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou:
Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. J. Bioinform. Comput. Biol. 1(2): 267-288 (2003) - 2002
- [j18]Yaw-Ling Lin, Tao Jiang, Kun-Mao Chao:
Efficient algorithms for locating the length-constrained heaviest segments with applications to biomolecular sequence analysis. J. Comput. Syst. Sci. 65(3): 570-586 (2002) - [j17]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Light graphs with small routing cost. Networks 39(3): 130-138 (2002) - 2000
- [j16]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Approximation algorithms for some optimum communication spanning tree problems. Discret. Appl. Math. 102(3): 245-266 (2000) - [j15]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Approximation algorithms for the shortest total path length spanning tree problem. Discret. Appl. Math. 105(1-3): 273-289 (2000) - [j14]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
A Polynomial Time Approximation Scheme for Optimal Product-Requirement Communication Spanning Trees. J. Algorithms 36(2): 182-204 (2000) - 1999
- [j13]Kun-Mao Chao:
Calign: aligning sequences with restricted affine gap penalties. Bioinform. 15(4): 298-304 (1999) - [j12]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
An Efficient Algorithm for the Length-Constrained Heaviest Path Problem on a Tree. Inf. Process. Lett. 69(2): 63-67 (1999) - [j11]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Approximation and Exact Algorithms for Constructing Minimum Ultrametric Trees from Distance Matrices. J. Comb. Optim. 3(2-3): 199-211 (1999) - [j10]Bang Ye Wu, Giuseppe Lancia, Vineet Bafna, Kun-Mao Chao, R. Ravi, Chuan Yi Tang:
A Polynomial-Time Approximation Scheme for Minimum Routing Cost Spanning Trees. SIAM J. Comput. 29(3): 761-778 (1999) - 1998
- [j9]Q. S. Wu, Kun-Mao Chao, Richard C. T. Lee:
The NPO-Completeness of the Longest Hamiltonian Cycle Problem. Inf. Process. Lett. 65(3): 119-123 (1998) - [j8]Kun-Mao Chao:
On Computing all Supoptimal Alignments. Inf. Sci. 105(1-4): 189-207 (1998) - 1997
- [j7]Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller:
A tool for aligning very similar DNA sequences. Comput. Appl. Biosci. 13(1): 75-80 (1997) - 1995
- [j6]Kun-Mao Chao, Webb Miller:
Linear-Space Algorithms that Build Local Alignments from Fragments. Algorithmica 13(1/2): 106-134 (1995) - [j5]Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller:
A local alignment tool for very long DNA sequences. Comput. Appl. Biosci. 11(2): 147-153 (1995) - 1994
- [j4]Kun-Mao Chao, Ross C. Hardison, Webb Miller:
Recent Developments in Linear-Space Alignment Methods: A Survey. J. Comput. Biol. 1(4): 271-291 (1994) - 1993
- [j3]Kun-Mao Chao, Ross C. Hardison, Webb Miller:
Locating well-conserved regions within a pairwise alignment. Comput. Appl. Biosci. 9(4): 387-396 (1993) - 1992
- [j2]Kun-Mao Chao, William R. Pearson, Webb Miller:
Aligning two sequences within a specified diagonal band. Comput. Appl. Biosci. 8(5): 481-487 (1992) - 1990
- [j1]Ruei-Chuan Chang, Kun-Mao Chao:
Parallel Operator-Precedence Parsing. J. Inf. Sci. Eng. 6(1): 51-61 (1990)
Conference and Workshop Papers
- 2016
- [c35]Albert Jhih-Heng Huang, Hung-Lung Wang, Kun-Mao Chao:
Computing the Line-Constrained k-center in the Plane for Small k. AAIM 2016: 197-208 - [c34]Tsung-Han Tsai, Lih-Jen Kau, Kun-Mao Chao:
A Takagi-Sugeno fuzzy neural network-based algorithm with single-channel EEG signal for the discrimination between light and deep sleep stages. BioCAS 2016: 532-535 - 2015
- [c33]Wei-Yin Lin, Yen-Wei Wu, Hung-Lung Wang, Kun-Mao Chao:
Forming Plurality at Minimum Cost. WALCOM 2015: 77-88 - 2014
- [c32]Yen-Wei Wu, Wei-Yin Lin, Hung-Lung Wang, Kun-Mao Chao:
The Generalized Popular Condensation Problem. ISAAC 2014: 606-617 - 2013
- [c31]Rung-Ren Lin, Ya-Hui Chang, Kun-Mao Chao:
A Compact and Efficient Labeling Scheme for XML Documents. DASFAA (1) 2013: 269-283 - [c30]Yen-Wei Wu, Wei-Yin Lin, Hung-Lung Wang, Kun-Mao Chao:
Computing Plurality Points and Condorcet Points in Euclidean Space. ISAAC 2013: 688-698 - [c29]Yen-Wei Wu, Wei-Yin Lin, Hung-Lung Wang, Kun-Mao Chao:
An Optimal Algorithm for the Popular Condensation Problem. IWOCA 2013: 412-422 - 2012
- [c28]Kun-Mao Chao, An-Chiang Chu, Jesper Jansson, Richard S. Lemence, Alban Mancheron:
Asymptotic Limits of a New Type of Maximization Recurrence with an Application to Bioinformatics. TAMC 2012: 177-188 - [c27]Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier:
Preserving Inversion Phylogeny Reconstruction. WABI 2012: 1-13 - 2011
- [c26]Rung-Ren Lin, Ya-Hui Chang, Kun-Mao Chao:
Identifying Relevant Matches with NOT Semantics over XML Documents. DASFAA (1) 2011: 466-480 - 2010
- [c25]Rung-Ren Lin, Ya-Hui Chang, Kun-Mao Chao:
Faster Algorithms for Searching Relevant Matches in XML Databases. DEXA (1) 2010: 290-297 - [c24]Kuan-Yu Chen, Kun-Mao Chao:
A Fully Compressed Algorithm for Computing the Edit Distance of Run-Length Encoded Strings. ESA (1) 2010: 415-426 - [c23]Kuan-Yu Chen, Ping-Hui Hsu, Kun-Mao Chao:
Identifying Approximate Palindromes in Run-Length Encoded Strings. ISAAC (2) 2010: 339-350 - 2009
- [c22]Kuan-Yu Chen, Ping-Hui Hsu, Kun-Mao Chao:
Approximate Matching for Run-Length Encoded Strings Is 3sum-Hard. CPM 2009: 168-179 - [c21]Matthias Bernt, Ming-Chiang Chen, Daniel Merkle, Hung-Lung Wang, Kun-Mao Chao, Martin Middendorf:
Finding All Sorting Tandem Duplication Random Loss Operations. CPM 2009: 301-313 - [c20]Ping-Hui Hsu, Kuan-Yu Chen, Kun-Mao Chao:
Finding All Approximate Gapped Palindromes. ISAAC 2009: 1084-1093 - 2008
- [c19]Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun Emma Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F. Huang:
PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database. ECCB 2008: 14-20 - [c18]Cheng-Wei Luo, Hsiao-Fei Liu, Peng-An Chen, Kun-Mao Chao:
Minkowski Sum Selection and Finding. ISAAC 2008: 460-471 - 2007
- [c17]Hsiao-Fei Liu, Peng-An Chen, Kun-Mao Chao:
Algorithms for Computing the Length-Constrained Max-Score Segments with Applications to DNA Copy Number Data Analysis. ISAAC 2007: 834-845 - 2006
- [c16]Hsiao-Fei Liu, Kun-Mao Chao:
On Locating Disjoint Segments with Maximum Sum of Densities. ISAAC 2006: 300-307 - 2005
- [c15]Chih-Huai Cheng, Kuan-Yu Chen, Wen-Chin Tien, Kun-Mao Chao:
Improved Algorithms for the k Maximum-Sums Problems. ISAAC 2005: 799-808 - [c14]Yao-Ting Huang, Kun-Mao Chao, Ting Chen:
An approximation algorithm for haplotype inference by maximum parsimony. SAC 2005: 146-150 - 2004
- [c13]I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao:
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds. BIBE 2004: 411-418 - [c12]Kuan-Yu Chen, Kun-Mao Chao:
On the Range Maximum-Sum Segment Query Problem. ISAAC 2004: 294-305 - [c11]Xiaoqiu Huang, Liang Ye, I-Hsuan Yang, Kun-Mao Chao:
A Sensitive Sequence Comparison Method. SNPD 2004: 77-80 - [c10]Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao:
Approximation Algorithms for the Selection of Robust Tag SNPs. WABI 2004: 278-289 - 2003
- [c9]Rung-Ren Lin, Wen-Hsiung Kuo, Kun-Mao Chao:
Finding a Length-Constrained Maximum-Density Path in a Tree. ISAAC 2003: 78-87 - 2002
- [c8]Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou:
Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment. CSB 2002: 127-137 - [c7]Yaw-Ling Lin, Tao Jiang, Kun-Mao Chao:
Efficient Algorithms for Locating the Length-Constrained Heaviest Segments, with Applications to Biomolecular Sequence Analysis. MFCS 2002: 459-470 - 1999
- [c6]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Constructing Light Spanning Trees with Small Routing Cost. STACS 1999: 334-344 - 1998
- [c5]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Approximation and Exact Algorithms for Constructing Minimum Ultrametric Trees from Distance Matrices. COCOON 1998: 299-308 - [c4]Bang Ye Wu, Kun-Mao Chao, Chuan Yi Tang:
Approximation Algorithms for Some Optimum Communication Spanning Tree Problems. ISAAC 1998: 407-416 - [c3]Bang Ye Wu, Giuseppe Lancia, Vineet Bafna, Kun-Mao Chao, R. Ravi, Chuan Yi Tang:
A Polynomial Time Approximation Scheme for Minimum Routing Cost Spanning Trees. SODA 1998: 21-32 - 1997
- [c2]Kun-Mao Chao:
Fast Algorithms for Aligning Sequences with Restricted Affine Gap Penalties. COCOON 1997: 264-273 - 1994
- [c1]Kun-Mao Chao:
Computing all Suboptimal Alignments in Linear Space. CPM 1994: 31-42
Parts in Books or Collections
- 2018
- [p2]Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao:
Approximation Algorithms for the Selection of Robust Tag SNPs. Handbook of Approximation Algorithms and Metaheuristics (2) 2018 - [p1]Bang Ye Wu, Chuan Yi Tang, Kun-Mao Chao:
Optimum Communication Spanning Trees. Handbook of Approximation Algorithms and Metaheuristics (2) 2018
Editorship
- 2012
- [e1]Kun-Mao Chao, Tsan-sheng Hsu, Der-Tsai Lee:
Algorithms and Computation - 23rd International Symposium, ISAAC 2012, Taipei, Taiwan, December 19-21, 2012. Proceedings. Lecture Notes in Computer Science 7676, Springer 2012, ISBN 978-3-642-35260-7 [contents]
Reference Works
- 2016
- [r6]Kun-Mao Chao:
Maximum-Average Segments. Encyclopedia of Algorithms 2016: 1241-1242 - [r5]Kun-Mao Chao:
Maximum-Sum Segments. Encyclopedia of Algorithms 2016: 1242-1244 - 2008
- [r4]Kun-Mao Chao:
Maximum-Density Segment. Encyclopedia of Algorithms 2008 - [r3]Kun-Mao Chao:
Maximum-scoring Segment with Length Restrictions. Encyclopedia of Algorithms 2008 - 2007
- [r2]Chuan Yi Tang, Kun-Mao Chao, Bang Ye Wu:
Optimum Communication Spanning Trees. Handbook of Approximation Algorithms and Metaheuristics 2007 - [r1]Kui Zhang, Kun-Mao Chao, Yao-Ting Huang, Ting Chen:
Approximation Algorithms for the Selection of Robust Tag SNPs. Handbook of Approximation Algorithms and Metaheuristics 2007
Informal and Other Publications
- 2024
- [i4]Manuel Dubinsky, Kun-Mao Chao, César Massri, Gabriel Taubin:
Lower Bounds for the Minimum Spanning Tree Cycle Intersection Problem. CoRR abs/2404.17428 (2024) - 2008
- [i3]Hsiao-Fei Liu, Kun-Mao Chao:
An Õ(n2.5)-Time Algorithm for Online Topological Ordering. CoRR abs/0804.3860 (2008) - [i2]Cheng-Wei Luo, Hsiao-Fei Liu, Peng-An Chen, Kun-Mao Chao:
Minkowski Sum Selection and Finding. CoRR abs/0809.1171 (2008) - [i1]Hsiao-Fei Liu, Peng-An Chen, Kun-Mao Chao:
Algorithms for Locating Constrained Optimal Intervals. CoRR abs/0809.2097 (2008)
Coauthor Index
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