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ORCIDComputer Applications in the Biosciences, Volume 8
Volume 8, Number 1, February 1992
- R. A. Sutherland, M. D. Partis:
Using fragment lengths from incomplete digestion by multiply cleaving enzymes to map antibody binding sites on a protein. 1-4 - Didier Arquès, Christian J. Michel, K. Orieux:
Analysis of gene evolution: the software AGE. 5-14 - Desmond G. Higgins:
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets. 15-22 - James Lee, Carl Yoshizawa, Lynne R. Wilkens, H. P. Lee:
Covariance adjustment of survival curves based on Cox's proportional hazards regression model. 23-27 - Jan Mrázek, J. Kypr:
GLOBIC: a very fast microcomputer program for fingerprinting, characterization and comparison of long nucleotide sequences. 29-34 - Mauno Vihinen, A. Euranto, Petri Luostarinen, Olli Nevalainen:
MULTICOMP: a program package for multiple sequence comparison. 35-38 - Edgardo A. Ferrán
, Pascual Ferrara:
Clustering proteins into families using artificial neural networks [published erratum appears in Comput Appl Biosci 1992 Jun;8(3): 305]. 39-44 - Peter R. Sibbald, Hubert Sommerfeldt, P. Argos:
Overseer: a nucleotide sequence searching tool. 45-48 - G. Vogt, P. Argos:
Searching for distantly related protein sequences in large databases by parallel processing on a transputer machine. 49-55 - Mikhail A. Roytberg:
A search for common patterns in many sequences. 57-64 - Jerry Nedelman, Patrick Heagerty, Charles Lawrence:
Quantitative PCR with internal controls. 65-70 - V. B. Cockcroft, J. T. Pedersen, G. G. Lunt, David J. Osguthorpe:
BIOSITE: a program for the interactive comparison of aligned homologous protein sequences. 71-73 - Christiaan Karreman:
A dotplot program for the Atari ST, for the analysis of DNA and protein sequences. 75-77 - Vadim E. Babenko, Valery R. Sagitov:
VECTOR-PC: a flexible tool for the design, display and retrieval of information regarding to cloning vectors. 79-80 - Marc Eberhard, Bernd Leister, Cornelia Stoppkotte:
MULTI: a program for multicomponent analysis of spectra. 81 - B. I. Osborne:
HyperPCR: a Macintosh Hypercard program for the determination of optimal PCR annealing temperature. 83
Volume 8, Number 2, April 1992
- Giles T. Innocent:
An investigation of the epidemiology of neuroblastoma in children under the age of 15 years in England, Scotland and Wales. 97-106 - K. Usdin:
Hypercard-based data management tools for molecular biologists. 107-111 - George N. Rapoport, Andrew G. Hertz:
On a common structure of intelligence in biological and technical systems. 113-119 - Pavel A. Pevzner:
Statistical distance between texts and filtration methods in sequence comparison. 121-127 - Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner:
Extendable words in nucleotide sequences. 129-135 - Desmond G. Higgins, Peter Stoehr:
EMBLSCAN: fast approximate DNA database searches on compact disc. 137-139 - Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz:
Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. 141-147 - Francis R. Rysavy, M. J. Bishop, G. P. Gibbs, G. W. Williams:
The UK Human Genome Mapping Project online computing service. 149-154 - Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison:
Parallelization of a local similarity algorithm. 155-165 - Perry L. Miller, Prakash M. Nadkarni, William R. Pearson:
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. 167-175 - D. J. Eernisse:
DNA Translator and Aligner: HyperCard utilities to aid phylogenetic analysis of molecules. 177-184 - M. D. Partis:
MOMENT: software for analysis and display of amphiphilic regions in proteins. 185-188 - Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs:
CLUSTAL V: improved software for multiple sequence alignment. 189-191 - L. S. Davidow:
Selecting PCR designed mismatch primers to create diagnostic restriction sites. 193-194 - Gianluca De Bellis, I. R. Consani, M. Manoni, R. Pergolizzi, M. Luzzana:
Fluorescent automated DNA sequencers: a file exchange program . 195 - John A. Byers:
REF-LIST: program to list references found in DOS text files of scientific manuscripts. 196-198 - Robert Jones:
Alerting users to relevant new entries in the GenBank DNA sequence database. 199
Volume 8, Number 3, June 1992
- P. J. Reddy, D. Krishna, U. S. Murty, K. Jamil:
A microcomputer FORTRAN program for rapid determination of lethal concentrations of biocides in mosquito control. 209-213 - C. Chevalet, B. Michot:
An algorithm for comparing RNA secondary structures and searching for similar substructures. 215-225 - Dong-Guk Shin, Changhwan Lee, Jinghui Zhang, Kenneth E. Rudd, Claire M. Berg:
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system. 227-238 - H. Pasternak, B. A. Shalev:
An algorithm to fit the Gompertz function to growth curves. 239-241 - Jih-Hsiang Chen, Shu-Yun Le, Jacob V. Maizel:
A procedure for RNA pseudoknot prediction. 243-248 - J. C. Wallace, Steven Henikoff:
PATMAT: a searching and extraction program for sequence, pattern and block queries and databases. 249-254 - Colombe Chappey, Serge A. Hazout:
A method for delineating structurally homogeneous regions in protein sequences. 255-260 - A. Friemann, S. Schmitz:
A new approach for displaying identities and differences among aligned amino acid sequences. 261-265 - D. T. Kincaid, R. Pilette:
Construction of simple pathways and simple cycles in ecosystems. 267-273 - David T. Jones, William R. Taylor, Janet M. Thornton:
The rapid generation of mutation data matrices from protein sequences. 275-282 - Barry Robson, P. J. Greaney:
Natural sequence code representations for compression and rapid searching of human-genome style databases. 283-289 - Mark Dubnick:
STATUS, SEQSTAT, CSTATUS and LOAD: computer programs that facilitate large DNA-sequencing projects. 291-292 - Olaf Gefeller:
A simple method of avoiding the computational problems of the delta method for the end-user of statistical packages. 293-294 - D. Akrigg, Terri K. Attwood, Alan J. Bleasby, John B. C. Findlay, A. C. North, N. A. Maughan, David J. Parry-Smith, D. N. Perkins, J. C. Wootton:
SERPENT - an information storage and analysis resource for protein sequences. 295-296
Volume 8, Number 4, August 1992
- P. Paz, J. Renau Piqueras, E. J. Tizado:
A program for the application of the radial distribution function to cluster analysis in cell biology. 307-309 - Nabil Kamel:
A profile for molecular biology databases and information resources. 311-321 - I. G. Badcoe:
A fast algorithm for counting the arrangements for packing identical items on a one-dimensional grid with application in DNA-protein and similar interactions. 323-330 - Kay Oliver Hofmann, Wilhelm Stoffel:
PROFILEGRAPH: an interactive graphical tool for protein sequence analysis. 331-337 - N. N. Alexandrov:
Local multiple alignment by consensus matrix. 339-345 - Peter D. Karp:
A knowledge base of the chemical compounds of intermediary metabolism. 347-357 - A. Fielding:
Applications of fractal geometry to biology. 359-366 - Mineichi Kudo, S. Kitamura-Abe, Masaru Shimbo, Y. Lida:
Analysis of context of 5'-splice site sequences in mammalian mRNA precursors by subclass method. 367-376 - Robert Jones:
Sequence pattern matching on a massively parallel computer. 377-383 - José A. López-Bueno, Andrés Moya:
GEOSEQ: a Pascal program to calculate statistical geometry parameters of aligned nucleic acid sequences. 385-388 - Michael Schmitz, Gerhard Steger:
Base-pair probability profiles of RNA secondary structures. 389-399 - Jan Mrázek, J. Kypr:
DNABIND: an interactive microcomputer program searching for nucleotide sequences that may code for conserved DNA-binding protein motifs. 401-404 - James Lee:
Comparison of variance between correlated samples. 405-406 - R. L. Read, D. Davison, J. E. Chappelear, John S. Garavelli:
GBPARSE: a parser for the GenBank flat-file format with the new feature table format. 407-408 - F. Dessaint:
Chull.sas: an SAS macro to construct the convex hull of one (or more) finite sets of points in a plane. 409
Volume 8, Number 5, October 1992
- Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev:
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering. 425-431 - Jürgen Kleffe, Mark Borodovsky:
First and second moment of counts of words in random texts generated by Markov chains. 433-441 - H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, Hans V. Westerhoff:
METASIM: object-oriented modelling of cell regulation. 443-449 - David J. Parry-Smith, Terri K. Attwood:
ADSP - a new package for computational sequence analysis. 451-459 - J. D. Parsons, S. Brenner, M. J. Bishop:
Clustering cDNA sequences. 461-466 - A. Jamie Cuticchia, Jonathan P. Arnold, H. Brody, William E. Timberlake:
CMAP: contig mapping and analysis package, a relational database for chromosome reconstruction. 467-474 - George W. Dombi:
Limitations of Augustinsson plots. 475-479 - Kun-Mao Chao, William R. Pearson, Webb Miller:
Aligning two sequences within a specified diagonal band. 481-487 - G. H. Dibdin:
A finite-difference computer model of solute diffusion in bacterial films with simultaneous metabolism and chemical reaction. 489-500 - Eric Depiereux, Ernest Feytmans:
MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences. 501-509 - X. Huang, Michael S. Waterman:
Dynamic programming algorithms for restriction map comparison. 511-520 - Denis C. Shields, Desmond G. Higgins, P. M. Sharp:
GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. 521-523 - Jan Mrázek, A. Spanova:
ANAGEL: a personal computer program for evaluating DNA fragment lengths from distances migrated in an agarose gel. 524
Volume 8, Number 6, December 1992
- Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi:
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. 529-534 - S. P. Clark:
MALIGNED: a multiple sequence alignment editor. 535-538 - D. Waddington, D. W. Burt:
Estimation of restriction maps with known site order using a generalized linear model [published erratum appears in Comput Appl Biosci 1993 Apr;9(2): 242]. 539-548 - A. Alvarruiz, A. Gutierrez, M. Rodrigo:
APL program for evaluation of heat processes for spherical foods. 549-554 - James Lee:
Cumulative logit modelling for ordinal response variables: applications to biomedical research. 555-562 - Gerard G. Bouffard, James Ostell, Kenneth E. Rudd:
GeneScape: a relational database of Escherichia coli genomic map data for Macintosh computers. 563-567 - A. Guénoche:
Can we recover a sequence, just knowing all its subsequences of given length? 569-574 - Frédéric Rodriguez, M. Prats:
Time correction for computing Michaelis-Menten kinetics. 575-577 - C. M. Comiskey, H. J. Ruskin:
AIDS in Ireland: the reporting delay distribution and the implementation of integral equation models. 579-581 - Mohamed J. Flifla, Mireille Garreau, Jean-Paul Rolland, Jean-Louis Coatrieux, Daniel Thomas:
IBIS integrated biological imaging system: electron micrograph image-processing software running on Unix workstations. 583-586 - Dieter Piepenburg, U. Piatkowski:
A program for computer-aided analyses of ecological field data. 587-590 - A. Luttke, Rainer Fuchs:
MacT: Apple Macintosh programs for constructing phylogenetic trees. 591-594 - R. Schipper, M. Kenter, Tobias Rinke de Wit, J. D'Amaro:
A personal computer program for large-scale comparisons of related nucleotide sequences. 595-597 - Jaap Heringa, Hubert Sommerfeldt, Desmond G. Higgins, Patrick Argos:
OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity. 599-600 - Mark Dubnick:
Btab - a Blast output parser. 601-602 - María Rosa Ponce, J. L. Micol:
Two computer programs for the generation of problems in transmission genetics for teaching purposes. 603-604 - Alan Howard:
MIGS - a simple graphics utility program. 605
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