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ORCIDTomás Gedeon
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- affiliation: Montana State University, Department of Mathematical Sciences
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Journal Articles
- 2023
[j31]Tomás Gedeon
, Breschine Cummins:
Oscillator death in coupled biochemical oscillators. Math. Control. Signals Syst. 35(4): 781-801 (2023)- 2022
- [j30]Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase:
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. 18(10): 1010145 (2022) - [j29]Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang:
Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation. SIAM J. Appl. Dyn. Syst. 21(3): 2096-2125 (2022) - [j28]Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
Joint realizability of monotone Boolean functions. Theor. Comput. Sci. 922: 447-474 (2022) - 2021
- [j27]William Duncan, Tomás Gedeon:
Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions. Int. J. Bifurc. Chaos 31(11): 2130032:1-2130032:27 (2021) - [j26]Tomás Gedeon, Lisa Davis, Katelyn Weber, Jennifer Thorenson:
Trade-offs among transcription elongation rate, number, and duration of ubiquitous pauses on highly transcribed bacterial genes. J. Bioinform. Comput. Biol. 19(5): 2150020:1-2150020:29 (2021) - [j25]Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow:
Rational design of complex phenotype via network models. PLoS Comput. Biol. 17(7) (2021) - [j24]William D. Kalies, Tomás Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka:
Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities. SIAM J. Appl. Dyn. Syst. 20(4): 2108-2141 (2021) - 2020
- [j23]Tomás Gedeon:
Multi-parameter exploration of dynamics of regulatory networks. Biosyst. 190: 104113 (2020) - [j22]Ying Xin, Bree Cummins, Tomás Gedeon:
Multistability in the epithelial-mesenchymal transition network. BMC Bioinform. 21(1): 71 (2020) - [j21]Danielle Ciesielski, Stephanie McCalla, Tomás Gedeon:
Analysis of Dynamics of a Biphasic Isothermal DNA Amplification Reaction. SIAM J. Appl. Math. 80(5): 2071-2097 (2020) - 2019
- [j20]Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM J. Appl. Dyn. Syst. 18(1): 418-457 (2019) - 2018
- [j19]Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow:
Identifying robust hysteresis in networks. PLoS Comput. Biol. 14(4) (2018) - [j18]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow:
Model Rejection and Parameter Reduction via Time Series. SIAM J. Appl. Dyn. Syst. 17(2): 1589-1616 (2018) - 2016
- [j17]Tamra Heberling, Lisa Davis, Jakub Gedeon, Charles Morgan, Tomás Gedeon:
A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases. PLoS Comput. Biol. 12(8) (2016) - [j16]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok:
Combinatorial Representation of Parameter Space for Switching Networks. SIAM J. Appl. Dyn. Syst. 15(4): 2176-2212 (2016) - 2015
- [j15]Bree Cummins, Tomás Gedeon, Kelly Spendlove:
On the Efficacy of State Space Reconstruction Methods in Determining Causality. SIAM J. Appl. Dyn. Syst. 14(1): 335-381 (2015) - 2012
- [j14]Tomás Gedeon, Albert E. Parker, Alexander G. Dimitrov:
The Mathematical Structure of Information Bottleneck Methods. Entropy 14(3): 456-479 (2012) - [j13]Jesse Berwald, Tomás Gedeon, John W. Sheppard:
Using machine learning to predict catastrophes in dynamical systems. J. Comput. Appl. Math. 236(9): 2235-2245 (2012) - 2011
- [j12]Zane N. Aldworth, Alexander G. Dimitrov, Graham I. Cummins, Tomás Gedeon, John P. Miller:
Temporal Encoding in a Nervous System. PLoS Comput. Biol. 7(5) (2011) - 2010
- [j11]Mark Campanelli, Tomás Gedeon:
Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein. PLoS Comput. Biol. 6(4) (2010) - [j10]Tomás Gedeon:
Oscillations in Monotone Systems with a Negative Feedback. SIAM J. Appl. Dyn. Syst. 9(1): 84-112 (2010) - [j9]Christina Hayes, Tomás Gedeon:
Hyperbolicity of the fixed point set for the simple genetic algorithm. Theor. Comput. Sci. 411(25): 2368-2383 (2010) - [j8]Albert E. Parker, Alexander G. Dimitrov, Tomás Gedeon:
Symmetry breaking in soft clustering decoding of neural codes. IEEE Trans. Inf. Theory 56(2): 901-927 (2010) - 2008
- [j7]Tomás Gedeon, Albert E. Parker, Collette Campion, Zane N. Aldworth:
Annealing and the normalized N-cut. Pattern Recognit. 41(2): 592-606 (2008) - 2007
- [j6]S. R. Harker, Curtis R. Vogel, Tomás Gedeon:
Analysis of Constrained Optimization Variants of the Map-Seeking Circuit Algorithm. J. Math. Imaging Vis. 29(1): 49-62 (2007) - [j5]Tomás Gedeon, David Arathorn:
Convergence of Map Seeking Circuits. J. Math. Imaging Vis. 29(2-3): 235-248 (2007) - 2006
- [j4]Alexander G. Dimitrov, Tomás Gedeon:
Effects of stimulus transformations on estimates of sensory neuron selectivity. J. Comput. Neurosci. 20(3): 265-283 (2006) - 2004
- [j3]Brendan Mumey, Aditi Sarkar, Tomás Gedeon, Alexander Dimitrov, John P. Miller:
Finding neural codes using random projections. Neurocomputing 58-60: 19-25 (2004) - 2001
- [j2]Alexander Dimitrov, John P. Miller, Zane N. Aldworth, Tomás Gedeon:
Non-uniform quantization of neural spike sequences through an information distortion measure. Neurocomputing 38-40: 175-181 (2001) - 1999
- [j1]Tomás Gedeon:
Additive neural networks and periodic patterns. Neural Networks 12(4-5): 617-626 (1999)
Conference and Workshop Papers
- 2017
- [c7]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow:
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN). CMSB 2017: 300-308 - 2011
- [c6]Alden H. Wright, Tomás Gedeon, J. Neal Richter:
On the movement of vertex fixed points in the simple GA. FOGA 2011: 193-208 - 2010
- [c5]Jesse Berwald, Tomás Gedeon, Konstantin Mischaikow:
Modeling Complexity of Physiological Time Series In-Silico. BIOSIGNALS 2010: 61-67 - 2007
- [c4]Tomás Gedeon, Christina Hayes, Richard Swanson:
Genericity of the Fixed Point Set for the Infinite Population Genetic Algorithm. FOGA 2007: 97-109 - 2005
- [c3]Christina Hayes, Tomás Gedeon:
Hyperbolic fixed points are typical in the space of mixing operators for the infinite population genetic algorithm. GECCO Workshops 2005: 358-361 - 2003
- [c2]Alexander Dimitrov, Tomás Gedeon, Brendan Mumey, Ross Snider, Albert E. Parker, John P. Miller:
Derivation of Natural Stimulus Feature Set Using a Data-Driven Model. International Conference on Computational Science 2003: 337-345 - 2002
- [c1]Albert E. Parker, Tomás Gedeon, Alexander Dimitrov:
Annealing and the Rate Distortion Problem. NIPS 2002: 969-976
Informal and Other Publications
- 2022
- [i3]Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon:
Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data. CoRR abs/2203.09552 (2022) - [i2]Albert E. Parker, Tomás Gedeon, Alexander Dimitrov:
The Lack of Convexity of the Relevance-Compression Function. CoRR abs/2204.10957 (2022) - 2019
- [i1]Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
A poset metric from the directed maximum common edge subgraph. CoRR abs/1910.14638 (2019)
Coauthor Index
aka: Bree Cummins
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