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Francois Berenger
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Journal Articles
- 2023
- [j13]Francois Berenger, Koji Tsuda:
3D-Sensitive Encoding of Pharmacophore Features. J. Chem. Inf. Model. 63(8): 2360-2369 (2023) - 2021
- [j12]Francois Berenger, Koji Tsuda:
Molecular generation by Fast Assembly of (Deep)SMILES fragments. J. Cheminformatics 13(1): 88 (2021) - [j11]Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi:
Lean-Docking: Exploiting Ligands' Predicted Docking Scores to Accelerate Molecular Docking. J. Chem. Inf. Model. 61(5): 2341-2352 (2021) - 2020
- [j10]Francois Berenger, Yoshihiro Yamanishi:
Ranking Molecules with Vanishing Kernels and a Single Parameter: Active Applicability Domain Included. J. Chem. Inf. Model. 60(9): 4376-4387 (2020) - 2019
- [j9]Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi:
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm. Bioinform. 35(14): i191-i199 (2019) - [j8]Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi:
Chemoinformatics and structural bioinformatics in OCaml. J. Cheminformatics 11(1): 10:1-10:13 (2019) - [j7]Francois Berenger, Yoshihiro Yamanishi:
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data. J. Chem. Inf. Model. 59(1): 463-476 (2019) - 2017
- [j6]Francois Berenger, Oanh Vu, Jens Meiler:
Consensus queries in ligand-based virtual screening experiments. J. Cheminformatics 9(1): 60:1-60:13 (2017) - 2014
- [j5]Arnout R. D. Voet, Ashutosh Kumar, Francois Berenger, Kam Y. J. Zhang:
Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4. J. Comput. Aided Mol. Des. 28(4): 363-373 (2014) - [j4]Francois Berenger, Arnout R. D. Voet, Xiao Yin Lee, Kam Y. J. Zhang:
A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening. J. Cheminformatics 6(1): 23 (2014) - 2012
- [j3]Francois Berenger, Rojan Shrestha, Yong Zhou, David Simoncini, Kam Y. J. Zhang:
Durandal: Fast exact clustering of protein decoys. J. Comput. Chem. 33(4): 471-474 (2012) - 2011
- [j2]Francois Berenger, Yong Zhou, Rojan Shrestha, Kam Y. J. Zhang:
Entropy-accelerated exact clustering of protein decoys. Bioinform. 27(7): 939-945 (2011) - 2010
- [j1]Francois Berenger, Camille Coti, Kam Y. J. Zhang:
PAR: a PARallel and distributed job crusher. Bioinform. 26(22): 2918-2919 (2010)
Conference and Workshop Papers
- 2017
- [c1]Huisong Li, Francois Berenger, Bor-Yuh Evan Chang, Xavier Rival:
Semantic-directed clumping of disjunctive abstract states. POPL 2017: 32-45
Informal and Other Publications
- 2017
- [i1]Francois Berenger, David Simoncini, Arnout R. D. Voet, Rojan Shrestha, Kam Y. J. Zhang:
Fragger: a protein fragment picker for structural queries. F1000Research 6: 1722- (2017)
Coauthor Index
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