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2020 – today
- 2024
[c34]Kotaro Ii, Hiroto Saigo, Yasuo Tabei:
A Branch-and-Bound Approach to Efficient Classification and Retrieval of Documents. ICPRAM 2024: 205-214- [i26]Takaaki Nishimoto, Yasuo Tabei:
Dynamic Suffix Array in Optimal Compressed Space. CoRR abs/2404.07510 (2024) - 2023
- [i25]Rory P. Bunker, Vo Nguyen Le Duy, Yasuo Tabei, Ichiro Takeuchi, Keisuke Fujii:
Multi-agent statistical discriminative sub-trajectory mining and an application to NBA basketball. CoRR abs/2311.16564 (2023) - 2022
- [j26]Takaaki Nishimoto, Yasuo Tabei:
LZRR: LZ77 parsing with right reference. Inf. Comput. 285(Part): 104859 (2022) - [j25]Vo Nguyen Le Duy
, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Hiroyuki Hanada, Yasuo Tabei, Ichiro Takeuchi:
Stat-DSM: Statistically Discriminative Sub-Trajectory Mining With Multiple Testing Correction. IEEE Trans. Knowl. Data Eng. 34(3): 1477-1488 (2022) - [c33]Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei:
An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space. ICALP 2022: 99:1-99:20 - [i24]Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei:
An Optimal-Time RLBWT Construction in BWT-runs Bounded Space. CoRR abs/2202.07885 (2022) - 2021
- [j24]Mirai Takayanagi, Yasuo Tabei, Einoshin Suzuki, Hiroto Saigo:
Sparse Nonnegative Interaction Models. IEEE Access 9: 109994-110005 (2021) - [j23]Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Block trees. J. Comput. Syst. Sci. 117: 1-22 (2021) - [j22]Shunsuke Kanda, Yasuo Tabei:
DyFT: a dynamic similarity search method on integer sketches. Knowl. Inf. Syst. 63(11): 2815-2840 (2021) - [c32]Takaaki Nishimoto, Yasuo Tabei:
R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space. CPM 2021: 21:1-21:21 - [c31]Koh Takeuchi, Masaaki Imaizumi, Shunsuke Kanda, Yasuo Tabei, Keisuke Fujii, Ken Yoda, Masakazu Ishihata, Takuya Maekawa:
Fréchet Kernel for Trajectory Data Analysis. SIGSPATIAL/GIS 2021: 221-224 - [c30]Takaaki Nishimoto, Yasuo Tabei:
Optimal-Time Queries on BWT-Runs Compressed Indexes. ICALP 2021: 101:1-101:15 - 2020
- [j21]Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh:
Space-Efficient Feature Maps for String Alignment Kernels. Data Sci. Eng. 5(2): 168-179 (2020) - [j20]Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei:
A compressed dynamic self-index for highly repetitive text collections. Inf. Comput. 273: 104518 (2020) - [j19]Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa:
Dynamic Path-decomposed Tries. ACM J. Exp. Algorithmics 25: 1-28 (2020) - [j18]Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma:
PARASOL: a hybrid approximation approach for scalable frequent itemset mining in streaming data. J. Intell. Inf. Syst. 55(1): 119-147 (2020) - [c29]Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei:
Succinct Trit-array Trie for Scalable Trajectory Similarity Search. SIGSPATIAL/GIS 2020: 518-529 - [c28]Shunsuke Kanda, Yasuo Tabei:
Dynamic Similarity Search on Integer Sketches. ICDM 2020: 242-251 - [c27]Ryoichiro Yafune, Daisuke Sakuma, Mirai Takayanagi, Yasuo Tabei, Noritaka Saito, Hiroto Saigo:
Automatically mining Relevant Variable Interactions Via Sparse Bayesian Learning. ICPR 2020: 9635-9642 - [i23]Takaaki Nishimoto, Yasuo Tabei:
Enumeration of LCP values, LCP intervals and Maximal repeats in BWT-runs Bounded Space. CoRR abs/2004.01493 (2020) - [i22]Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei:
Succinct Trit-array Trie for Scalable Trajectory Similarity Search. CoRR abs/2005.10917 (2020) - [i21]Takaaki Nishimoto, Yasuo Tabei:
Faster Queries on BWT-runs Compressed Indexes. CoRR abs/2006.05104 (2020) - [i20]Shunsuke Kanda, Yasuo Tabei:
Dynamic Similarity Search on Integer Sketches. CoRR abs/2009.11559 (2020)
2010 – 2019
- 2019
- [j17]Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi:
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm. Bioinform. 35(14): i191-i199 (2019) - [j16]Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi:
Network-based characterization of drug-protein interaction signatures with a space-efficient approach. BMC Syst. Biol. 13-S(2): 39:1-39:15 (2019) - [c26]Shunsuke Kanda, Yasuo Tabei:
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches. IEEE BigData 2019: 810-819 - [c25]Takaaki Nishimoto, Yasuo Tabei:
Conversion from RLBWT to LZ77. CPM 2019: 9:1-9:12 - [c24]Takaaki Nishimoto, Yasuo Tabei:
LZRR: LZ77 Parsing with Right Reference. DCC 2019: 211-220 - [c23]Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi:
Statistically Discriminative Sub-trajectory Mining with Multiple Testing Correction. SIGSPATIAL/GIS 2019: 548-551 - [c22]Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh:
Space-Efficient Feature Maps for String Alignment Kernels. ICDM 2019: 1312-1317 - [i19]Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma:
Approximate-Closed-Itemset Mining for Streaming Data Under Resource Constraint. CoRR abs/1901.01710 (2019) - [i18]Takaaki Nishimoto, Yasuo Tabei:
Conversion from RLBWT to LZ77. CoRR abs/1902.05224 (2019) - [i17]Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Nishi, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi:
Statistically Discriminative Sub-trajectory Mining. CoRR abs/1905.01788 (2019) - [i16]Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa:
Dynamic Path-Decomposed Tries. CoRR abs/1906.06015 (2019) - [i15]Shunsuke Kanda, Yasuo Tabei:
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches. CoRR abs/1910.08278 (2019) - 2018
- [c21]Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei:
A Dynamic Compressed Self-Index for Highly Repetitive Text Collections. DCC 2018: 287-296 - [c20]Mirai Takayanagi, Yasuo Tabei, Hiroto Saigo:
Entire Regularization Path for Sparse Nonnegative Interaction Model. ICDM 2018: 1254-1259 - [c19]Yasuo Tabei:
Scalable Machine Learning on Compact Data Representations. ISITA 2018: 26-30 - [i14]Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh:
Scalable Alignment Kernels via Space-Efficient Feature Maps. CoRR abs/1802.06382 (2018) - [i13]Takaaki Nishimoto, Yasuo Tabei:
LZRR: LZ77 Parsing with Right Reference. CoRR abs/1812.04261 (2018) - 2017
- [c18]Naoya Takeishi, Yoshinobu Kawahara, Yasuo Tabei, Takehisa Yairi:
Bayesian Dynamic Mode Decomposition. IJCAI 2017: 2814-2821 - [c17]Yasuo Tabei, Simon J. Puglisi:
Scalable Similarity Search for Molecular Descriptors. SISAP 2017: 207-219 - [i12]Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei:
A compressed dynamic self-index for highly repetitive text collections. CoRR abs/1711.02855 (2017) - 2016
- [j15]Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto:
siEDM: An Efficient String Index and Search Algorithm for Edit Distance with Moves. Algorithms 9(2): 26 (2016) - [j14]Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera:
Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction. Bioinform. 32(12): 278-287 (2016) - [c16]Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi:
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices. KDD 2016: 1875-1884 - [i11]Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto:
siEDM: an efficient string index and search algorithm for edit distance with moves. CoRR abs/1602.06688 (2016) - [i10]Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi:
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices. CoRR abs/1606.05031 (2016) - [i9]Yasuo Tabei, Simon J. Puglisi:
Scalable Similarity Search for Molecular Descriptors. CoRR abs/1611.10045 (2016) - 2015
- [j13]Yoshihiro Yamanishi, Yasuo Tabei, Masaaki Kotera:
Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments. Bioinform. 31(12): 161-170 (2015) - [c15]Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Queries on LZ-Bounded Encodings. DCC 2015: 83-92 - [c14]Djamal Belazzougui, Patrick Hagge Cording, Simon J. Puglisi, Yasuo Tabei:
Access, Rank, and Select in Grammar-compressed Strings. ESA 2015: 142-154 - [c13]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Online Self-Indexed Grammar Compression. SPIRE 2015: 258-269 - [i8]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Online Self-Indexed Grammar Compression. CoRR abs/1507.00805 (2015) - 2014
- [j12]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto:
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30(12): 165-174 (2014) - [c12]Shirou Maruyama, Yasuo Tabei:
Fully Online Grammar Compression in Constant Space. DCC 2014: 173-182 - [c11]Koji Maeda, Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Finding Ambiguous Patterns on Grammar Compressed String. JSAI-isAI Workshops 2014: 331-339 - [c10]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Online Pattern Matching for String Edit Distance with Moves. SPIRE 2014: 203-214 - [c9]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Improved ESP-index: A Practical Self-index for Highly Repetitive Texts. SEA 2014: 338-350 - [i7]Shirou Maruyama, Yasuo Tabei:
Fully Online Grammar Compression in Constant Space. CoRR abs/1401.5143 (2014) - [i6]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Improved ESP-index: a practical self-index for highly repetitive texts. CoRR abs/1404.4972 (2014) - [i5]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Online Pattern Matching for String Edit Distance with Moves. CoRR abs/1408.0467 (2014) - [i4]Djamal Belazzougui, Simon J. Puglisi, Yasuo Tabei:
Rank, select and access in grammar-compressed strings. CoRR abs/1408.3093 (2014) - [i3]Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Queries on LZ-Bounded Encodings. CoRR abs/1412.0967 (2014) - 2013
- [j11]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto:
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29(13): 135-144 (2013) - [j10]Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi:
Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. 7(S-6): S18 (2013) - [j9]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto:
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7(S-6): S2 (2013) - [j8]Yasuo Tabei, Yoshihiro Yamanishi:
Scalable prediction of compound-protein interactions using minwise hashing. BMC Syst. Biol. 7(S-6): S3 (2013) - [c8]Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto:
A Succinct Grammar Compression. CPM 2013: 235-246 - [c7]Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi:
Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints. KDD 2013: 176-184 - [c6]Shirou Maruyama, Yasuo Tabei, Hiroshi Sakamoto, Kunihiko Sadakane:
Fully-Online Grammar Compression. SPIRE 2013: 218-229 - [i2]Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto:
A Succinct Grammar Compression. CoRR abs/1304.0917 (2013) - 2012
- [j7]Yasuo Tabei, Edouard Pauwels, Véronique Stoven, Kazuhiro Takemoto, Yoshihiro Yamanishi:
Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers. Bioinform. 28(18): 487-494 (2012) - [j6]Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii:
PoSSuM: a database of similar protein-ligand binding and putative pockets. Nucleic Acids Res. 40(Database-Issue): 541-548 (2012) - [c5]Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto:
Variable-Length Codes for Space-Efficient Grammar-Based Compression. SPIRE 2012: 398-410 - [c4]Yasuo Tabei:
Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches. WABI 2012: 201-213 - 2011
- [c3]Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda:
LGM: Mining Frequent Subgraphs from Linear Graphs. PAKDD (2) 2011: 26-37 - [c2]Yasuo Tabei, Koji Tsuda:
Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees. SDM 2011: 154-163 - [i1]Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda:
LGM: Mining Frequent Subgraphs from Linear Graphs. CoRR abs/1102.4480 (2011) - 2010
- [c1]Yasuo Tabei, Takeaki Uno, Masashi Sugiyama, Koji Tsuda:
Single versus Multiple Sorting in All Pairs Similarity Search. ACML 2010: 145-160
2000 – 2009
- 2009
- [j5]Yasuo Tabei, Kiyoshi Asai:
A local multiple alignment method for detection of non-coding RNA sequences. Bioinform. 25(12): 1498-1505 (2009) - 2008
- [j4]Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai:
A fast structural multiple alignment method for long RNA sequences. BMC Bioinform. 9 (2008) - [j3]Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama:
Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 75-78 (2008) - 2007
- [j2]Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai:
Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinform. 23(13): 1588-1598 (2007) - 2006
- [j1]Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai:
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Bioinform. 22(14): 1723-1729 (2006)
Coauthor Index
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