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Chase Cockrell
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2020 – today
- 2024
- [j7]Bryan Shin, Gary An, Chase Cockrell:
Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model. PLoS Comput. Biol. 20(1) (2024) - 2023
- [i3]Gary An, Chase Cockrell:
Generating synthetic multi-dimensional molecular-mediator time series data for artificial intelligence-based disease trajectory forecasting and drug development digital twins: Considerations. CoRR abs/2303.09056 (2023) - 2022
- [i2]Chase Cockrell, Scott Christley, Gary An:
Facilitating automated conversion of scientific knowledge into scientific simulation models with the Machine Assisted Generation, Calibration, and Comparison (MAGCC) Framework. CoRR abs/2204.10382 (2022) - 2021
- [j6]Chase Cockrell, Jonathan Ozik, Nick Collier, Gary An:
Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models. Simul. 97(4) (2021)
2010 – 2019
- 2019
- [j5]Brenden K. Petersen, Jiachen Yang, Will S. Grathwohl, Chase Cockrell, Claudio Santiago, Gary An, Daniel M. Faissol:
Deep Reinforcement Learning and Simulation as a Path Toward Precision Medicine. J. Comput. Biol. 26(6): 597-604 (2019) - 2018
- [j4]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin:
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. 19-S(18): 81-97 (2018) - [j3]Chase Cockrell, Gary An:
Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation. PLoS Comput. Biol. 14(2) (2018) - [i1]Brenden K. Petersen, Jiachen Yang, Will S. Grathwohl, Chase Cockrell, Claudio Santiago, Gary An, Daniel M. Faissol:
Precision medicine as a control problem: Using simulation and deep reinforcement learning to discover adaptive, personalized multi-cytokine therapy for sepsis. CoRR abs/1802.10440 (2018) - 2015
- [j2]Scott Christley, Chase Cockrell, Gary An:
Computational Studies of the Intestinal Host-Microbiota Interactome. Comput. 3(1): 2-28 (2015) - 2014
- [j1]Chase Cockrell, Scott Christley, Gary An:
Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT). PLoS Comput. Biol. 10(3) (2014) - 2013
- [c2]Chase Cockrell, Scott Christley, Gary An, Eugene Chang, Marc Ward:
Examining the dynamics of epithelial metaplasia and pouchitis in an ileal pouch with a spatially-explicit computational multi-scale gut model (MSGM). SpringSim (ADS) 2013: 4 - 2011
- [c1]Fang Liu, Ritu Mundhe, Masha Sosonkina, Chase Cockrell, Miles Aronnax, Pieter Maris, James P. Vary:
A data management system for ab-initio nuclear physics applications. SpringSim (HPC) 2011: 40-47
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