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Journal Articles
- 2019
[j27]Thomas W. McCarthy
, Hsien-chao Chou, Volker P. Brendel:
SRAssembler: Selective Recursive local Assembly of homologous genomic regions. BMC Bioinform. 20(1): 371:1-371:13 (2019)- 2012
- [j26]Daniel S. Standage, Volker P. Brendel:
ParsEval: parallel comparison and analysis of gene structure annotations. BMC Bioinform. 13: 187 (2012) - [j25]Erin L. Doyle, Nicholas J. Booher, Daniel S. Standage, Daniel F. Voytas, Volker P. Brendel, John K. VanDyk, Adam J. Bogdanove:
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction. Nucleic Acids Res. 40(Web-Server-Issue): 117-122 (2012) - 2011
- [j24]Carol Lushbough, Douglas M. Jennewein, Volker Brendel:
The BioExtract Server: a web-based bioinformatic workflow platform. Nucleic Acids Res. 39(Web-Server-Issue): 528-532 (2011) - 2010
- [j23]Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel:
BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 12-24 (2010) - 2009
- [j22]Matthew D. Wilkerson, Yuanbin Ru, Volker Brendel:
Common introns within orthologous genes: software and application to plants. Briefings Bioinform. 10(6): 631-644 (2009) - [j21]Taner Z. Sen, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon, Darwin A. Campbell, Carolyn J. Lawrence:
MaizeGDB becomes 'sequence-centric'. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j20]Michael E. Sparks, Volker Brendel:
MetWAMer: eukaryotic translation initiation site prediction. BMC Bioinform. 9 (2008) - [j19]Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel:
Implementing bioinformatic workflows within the BioExtract Server. Int. J. Comput. Biol. Drug Des. 1(3): 302-312 (2008) - [j18]Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. Int. J. Comput. Biol. Drug Des. 1(4): 347-367 (2008) - [j17]Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel:
PlantGDB: a resource for comparative plant genomics. Nucleic Acids Res. 36(Database-Issue): 959-965 (2008) - 2007
- [j16]Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel:
Tracembler - software for in-silico chromosome walking in unassembled genomes. BMC Bioinform. 8 (2007) - 2005
- [j15]Xiaokang Pan, Lincoln Stein, Volker Brendel:
SynBrowse: a synteny browser for comparative sequence analysis. Bioinform. 21(17): 3461-3468 (2005) - [j14]Michael E. Sparks, Volker Brendel:
Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants. Bioinform. 21(S3): 30 (2005) - [j13]Gordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz:
Engineering a software tool for gene structure prediction in higher organisms. Inf. Softw. Technol. 47(15): 965-978 (2005) - 2004
- [j12]Volker Brendel, Liqun Xing, Wei Zhu:
Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinform. 20(7): 1157-1169 (2004) - [j11]Qunfeng Dong, Shannon D. Schlueter, Volker Brendel:
PlantGDB, plant genome database and analysis tools. Nucleic Acids Res. 32(Database-Issue): 354-359 (2004) - [j10]Carolyn J. Lawrence, Qunfeng Dong, Mary L. Polacco, Trent E. Seigfried, Volker Brendel:
MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Res. 32(Database-Issue): 393-397 (2004) - 2003
- [j9]Qunfeng Dong, Laura Roy, Michael Freeling, Virginia Walbot, Volker Brendel:
ZmDB, an integrated database for maize genome research. Nucleic Acids Res. 31(1): 244-247 (2003) - [j8]Shannon D. Schlueter, Qunfeng Dong, Volker Brendel:
GeneSeqer add PlantGDB: gene structure prediction in plant genomes. Nucleic Acids Res. 31(13): 3597-3600 (2003) - [j7]Anantharaman Kalyanaraman, Srinivas Aluru, Volker Brendel, Suresh C. Kothari:
Space and time efficient parallel algorithms and software for EST clustering. IEEE Trans. Parallel Distributed Syst. 14(12): 1209-1221 (2003) - 2002
- [j6]Wei Zhu, Volker Brendel:
Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions. Bioinform. 18(5): 761-762 (2002) - 2001
- [j5]Liqun Xing, Volker Brendel:
Multi-query sequence BLAST output examination with MuSeqBox. Bioinform. 17(8): 744-745 (2001) - 2000
- [j4]Jonathan Usuka, Wei Zhu, Volker Brendel:
Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinform. 16(3): 203-211 (2000) - [j3]Xiaowu Gai, Shailesh Lal, Liqun Xing, Volker Brendel, Virginia Walbot:
Gene discovery using the maize genome database ZmDB. Nucleic Acids Res. 28(1): 94-96 (2000) - 1998
- [j2]Jürgen Kleffe, Klaus Hermann, Wolfgang Vahrson, Burghardt Wittig, Volker Brendel:
GeneGenerator - a flexible algorithm for gene prediction and its application to maize sequences. Bioinform. 14(3): 232-243 (1998) - 1994
- [j1]Volker Brendel, Samuel Karlin:
Applications of Statistical Criteria in Protein Sequence Analysis: Case Study of Yeast RNA Polymerase II Subunits. Comput. Chem. 18(3): 251-253 (1994)
Conference and Workshop Papers
- 2008
- [c7]Carol Lushbough, Volker Brendel:
An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis. BIOCOMP 2008: 573-578 - [c6]Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel:
TableMaker: An ad hoc Query Tool for Relational Databases. BIOCOMP 2008: 608-611 - [c5]Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. ISBRA 2008: 50-61 - 2007
- [c4]Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel:
Creating Bioinformatic Workflows within the BioExtract Server. BIOCOMP 2007: 316-322 - [c3]Michael E. Sparks, Volker Brendel, Karin S. Dorman:
Markov Model Variants for Appraisal of Coding Potential in Plant DNA. ISBRA 2007: 394-405 - 2002
- [c2]Volker Brendel:
Integration of Data Management and Analysis for Genome Research. GI Jahrestagung (Ergänzungsband) 2002: 10-20 - 1997
- [c1]Jürgen Kleffe, Klaus Hermann, Wolfgang Vahrson, Burghardt Wittig, Volker Brendel:
GeneGenerator- a flexible algorfthm for gene prediction. German Conference on Bioinformatics 1997: 83-86
Coauthor Index
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