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ORCIDMarília D. V. Braga
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- affiliation: Bielefeld University, CeBiTec, Germany
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Journal Articles
- 2024
[j24]Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
Investigating the complexity of the double distance problems. Algorithms Mol. Biol. 19(1): 1 (2024)- 2023
- [j23]Diego P. Rubert
, Marília D. V. Braga:
Efficient gene orthology inference via large-scale rearrangements. Algorithms Mol. Biol. 18(1): 14 (2023) - 2021
- [j22]Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga:
Natural family-free genomic distance. Algorithms Mol. Biol. 16(1): 4 (2021) - [j21]Diego P. Rubert, Daniel Doerr, Marília D. V. Braga:
The potential of family-free rearrangements towards gene orthology inference. J. Bioinform. Comput. Biol. 19(6): 2140014:1-2140014:15 (2021) - [j20]Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye:
Computing the Rearrangement Distance of Natural Genomes. J. Comput. Biol. 28(4): 410-431 (2021) - [j19]Eyla Willing, Jens Stoye, Marília D. V. Braga:
Computing the Inversion-Indel Distance. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2314-2326 (2021) - 2018
- [j18]Diego P. Rubert, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez:
Computing the family-free DCJ similarity. BMC Bioinform. 19-S(6): 31-42 (2018) - 2017
- [j17]Diego P. Rubert, Pedro Feijão, Marília Dias Vieira Braga, Jens Stoye, Fábio Viduani Martinez:
Approximating the DCJ distance of balanced genomes in linear time. Algorithms Mol. Biol. 12(1): 3:1-3:13 (2017) - [j16]Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga:
Genomic Distance with High Indel Costs. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 728-732 (2017) - 2015
- [j15]Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye:
On the family-free DCJ distance and similarity. Algorithms Mol. Biol. 10: 13 (2015) - [j14]Marília D. V. Braga, Jens Stoye:
Sorting Linear Genomes with Rearrangements and Indels. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 500-506 (2015) - 2013
- [j13]Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga:
DCJ-indel and DCJ-substitution distances with distinct operation costs. Algorithms Mol. Biol. 8: 21 (2013) - [j12]Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye:
On the inversion-indel distance. BMC Bioinform. 14(S-15): S3 (2013) - 2012
- [j11]Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga:
Restricted DCJ-indel model: sorting linear genomes with DCJ and indels. BMC Bioinform. 13(S-19): S14 (2012) - 2011
- [j10]Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye:
On the weight of indels in genomic distances. BMC Bioinform. 12(S-9): S13 (2011) - [j9]Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye:
Genomic distance under gene substitutions. BMC Bioinform. 12(S-9): S8 (2011) - [j8]Marília D. V. Braga, Eyla Willing, Jens Stoye:
Double Cut and Join with Insertions and Deletions. J. Comput. Biol. 18(9): 1167-1184 (2011) - [j7]Jakub Kovác, Robert Warren, Marília D. V. Braga, Jens Stoye:
Restricted DCJ Model: Rearrangement Problems with Chromosome Reincorporation. J. Comput. Biol. 18(9): 1231-1241 (2011) - 2010
- [j6]Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi:
Repetition-free longest common subsequence. Discret. Appl. Math. 158(12): 1315-1324 (2010) - [j5]Marília D. V. Braga, Jens Stoye:
The Solution Space of Sorting by DCJ. J. Comput. Biol. 17(9): 1145-1165 (2010) - 2009
- [j4]Marília D. V. Braga, Christian Gautier, Marie-France Sagot:
An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms Mol. Biol. 4: 16 (2009) - [j3]Marília D. V. Braga:
baobabLUNA: the solution space of sorting by reversals. Bioinform. 25(14): 1833-1835 (2009) - 2008
- [j2]Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi:
Repetition-free longest common subsequence. Electron. Notes Discret. Math. 30: 243-248 (2008) - [j1]Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier:
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 348-356 (2008)
Conference and Workshop Papers
- 2023
- [c18]Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
On the Class of Double Distance Problems. RECOMB-CG 2023: 35-50 - 2022
- [c17]Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. WABI 2022: 13:1-13:16 - [c16]Diego P. Rubert, Marília D. V. Braga:
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. WABI 2022: 24:1-24:22 - 2020
- [c15]Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye:
Computing the Rearrangement Distance of Natural Genomes. RECOMB 2020: 3-18 - [c14]Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga:
Natural Family-Free Genomic Distance. WABI 2020: 3:1-3:23 - 2017
- [c13]Diego P. Rubert, Gabriela Medeiros, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez:
Algorithms for Computing the Family-Free Genomic Similarity Under DCJ. RECOMB-CG 2017: 76-100 - 2016
- [c12]Diego P. Rubert, Pedro Feijão, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez:
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. WABI 2016: 293-306 - 2014
- [c11]Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye:
On the Family-Free DCJ Distance. WABI 2014: 174-186 - 2013
- [c10]Marília D. V. Braga:
An Overview of Genomic Distances Modeled with Indels. CiE 2013: 22-31 - [c9]Marília D. V. Braga, Jens Stoye:
Restricted DCJ-Indel Model Revisited. BSB 2013: 36-46 - 2012
- [c8]Poly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas:
DCJ-indel Distance with Distinct Operation Costs. WABI 2012: 378-390 - 2011
- [c7]Marcelo P. Lopes, Marília D. V. Braga, Celina M. H. de Figueiredo, Rodrigo de A. Hausen, Luis Antonio Brasil Kowada:
Analysis and Implementation of Sorting by Transpositions Using Permutation Trees. BSB 2011: 42-49 - 2010
- [c6]Jakub Kovác, Marília D. V. Braga, Jens Stoye:
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. RECOMB-CG 2010: 13-24 - [c5]Marília D. V. Braga:
On Sorting Genomes with DCJ and Indels. RECOMB-CG 2010: 62-73 - [c4]Marília D. V. Braga, Eyla Willing, Jens Stoye:
Genomic Distance with DCJ and Indels. WABI 2010: 90-101 - 2009
- [c3]Marília D. V. Braga, Jens Stoye:
Counting All DCJ Sorting Scenarios. RECOMB-CG 2009: 36-47 - 2007
- [c2]Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier:
The Solution Space of Sorting by Reversals. ISBRA 2007: 293-304 - 2002
- [c1]Marília D. V. Braga, Joao Meidanis:
An Algorithm That Builds a Set of Strings Given Its Overlap Graph. LATIN 2002: 52-63
Parts in Books or Collections
- 2013
- [p1]Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler:
The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 2013: 287-307
Informal and Other Publications
- 2023
- [i4]Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
Investigating the complexity of the double distance problems. CoRR abs/2303.04205 (2023) - 2020
- [i3]Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye:
Computing the rearrangement distance of natural genomes. CoRR abs/2001.02139 (2020) - [i2]Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga:
Natural family-free genomic distance. CoRR abs/2007.03556 (2020) - 2019
- [i1]Eyla Willing, Jens Stoye, Marília D. V. Braga:
Computing the Inversion-Indel Distance. CoRR abs/1909.12877 (2019)
Coauthor Index
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last updated on 2024-04-25 01:20 CEST by the dblp team
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