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ORCIDAlgorithms for Molecular Biology, Volume 19
Volume 19, Number 1, December 2024
- Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye:
Investigating the complexity of the double distance problems. 1 - Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy:
Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem. 2 - Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro:
Fulgor: a fast and compact k-mer index for large-scale matching and color queries. 3 - Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain:
Co-linear chaining on pangenome graphs. 4 - Victor Epain, Rumen Andonov:
Global exact optimisations for chloroplast structural haplotype scaffolding. 5 - Alitzel López Sánchez, Manuel Lafond:
Predicting horizontal gene transfers with perfect transfer networks. 6 - Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek:
Unifying duplication episode clustering and gene-species mapping inference. 7 - Leonard Bohnenkämper:
Recombinations, chains and caps: resolving problems with the DCJ-indel model. 8 - Mateo Gray, Sebastian Will, Hosna Jabbari:
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration. 9 - Nicola Rizzo
, Manuel Cáceres, Veli Mäkinen:
Finding maximal exact matches in graphs. 10 - Zsuzsanna Lipták, Francesco Masillo, Simon J. Puglisi:
Suffix sorting via matching statistics. 11 - Shayesteh Arasti, Siavash Mirarab:
Median quartet tree search algorithms using optimal subtree prune and regraft. 12 - Hua-Ting Yao, Bertrand Marchand, Sarah J. Berkemer, Yann Ponty, Sebastian Will:
Infrared: a declarative tree decomposition-powered framework for bioinformatics. 13 - Diego Díaz-Domínguez, Miika Leinonen, Leena Salmela:
Space-efficient computation of k-mer dictionaries for large values of k. 14 - Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Pfp-fm: an accelerated FM-index. 15
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