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Ross C. Hardison
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Journal Articles
- 2023
- [j19]Guanjue Xiang
, Belinda Giardine, Lin An, Chen Sun, Cheryl A. Keller, Elisabeth F. Heuston
, Stacie M. Anderson, Martha Kirby, David M. Bodine, Yu Zhang, Ross C. Hardison
:
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation. BMC Bioinform. 24(1): 102 (2023) - 2021
- [j18]Guanjue Xiang
, Belinda Giardine, Shaun Mahony
, Yu Zhang, Ross C. Hardison
:
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types. Bioinform. 37(18): 3011-3013 (2021) - [j17]Belinda Giardine, Philippe Joly, Serge Pissard, Henri Wajcman, David H. K. Chui, Ross C. Hardison, George P. Patrinos
:
Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations. Nucleic Acids Res. 49(Database-Issue): D1192-D1196 (2021) - 2020
- [j16]Peng He
, Brian A. Williams
, Diane Trout
, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A. Pennacchio
, Diane E. Dickel
, Axel Visel
, Bing Ren
, Ross C. Hardison
, Yu Zhang, Barbara J. Wold
:
The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nat. 583(7818): 760-767 (2020) - 2016
- [j15]Jens Lichtenberg
, Elisabeth F. Heuston
, Tejaswini Mishra, Cheryl A. Keller, Ross C. Hardison
, David M. Bodine:
SBR-Blood: systems biology repository for hematopoietic cells. Nucleic Acids Res. 44(Database-Issue): 925-931 (2016) - 2014
- [j14]Yeonok Lee, Debashis Ghosh, Ross C. Hardison
, Yu Zhang:
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS. Bioinform. 30(12): 1755-1756 (2014) - [j13]Belinda Giardine, Joseph Borg
, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas
, Henri Wajcman, Ross C. Hardison
, George P. Patrinos:
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations. Nucleic Acids Res. 42(Database-Issue): 1063-1069 (2014) - [j12]Benjamin D. Pope
, Tyrone Ryba, Vishnu Dileep
, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera
, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder
, John A. Stamatoyannopoulos, James Taylor
, Ross C. Hardison
, Tamer Kahveci, Bing Ren, David M. Gilbert:
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515(7527): 402-405 (2014) - 2010
- [j11]Chih-Hao Hsu, Yu Zhang, Ross C. Hardison
, Eric D. Green, Webb Miller:
An Effective Method for Detecting Gene Conversion Events in Whole Genomes. J. Comput. Biol. 17(9): 1281-1297 (2010) - 2008
- [j10]Obi L. Griffith
, Stephen B. Montgomery
, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts
, Shaun Mahony
, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith
, Steven M. Gallo
, Belinda Giardine, Bart Hooghe, Peter Van Loo
, Enrique Blanco
, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar
, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman
, Ross C. Hardison
, Casey M. Bergman
, Steven J. M. Jones
:
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36(Database-Issue): 107-113 (2008) - 2005
- [j9]Laura Elnitski
, Belinda Giardine, Prachi Shah, Yi Zhang, Cathy Riemer, Matthew T. Weirauch, Richard Burhans, Webb Miller, Ross C. Hardison
:
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Res. 33(Database-Issue): 466-470 (2005) - 2004
- [j8]George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, David H. K. Chui, Nicholas P. Anagnou, Henri Wajcman, Ross C. Hardison
:
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. Nucleic Acids Res. 32(Database-Issue): 537-541 (2004) - 2003
- [j7]Scott Schwartz, Laura Elnitski
, Mei Li, Matthew T. Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison
, Webb Miller:
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. Nucleic Acids Res. 31(13): 3518-3524 (2003) - 1994
- [j6]Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang, Ross C. Hardison
:
Constructing Aligned Sequence Blocks. J. Comput. Biol. 1(1): 51-64 (1994) - [j5]Zheng Zhang, Balaji Raghavachari, Ross C. Hardison
, Webb Miller:
Chaining Multiple-Alignment Blocks. J. Comput. Biol. 1(3): 217-226 (1994) - [j4]Kun-Mao Chao, Ross C. Hardison
, Webb Miller:
Recent Developments in Linear-Space Alignment Methods: A Survey. J. Comput. Biol. 1(4): 271-291 (1994) - 1993
- [j3]Kun-Mao Chao
, Ross C. Hardison, Webb Miller:
Locating well-conserved regions within a pairwise alignment. Comput. Appl. Biosci. 9(4): 387-396 (1993) - 1992
- [j2]Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison:
Parallelization of a local similarity algorithm. Comput. Appl. Biosci. 8(2): 155-165 (1992) - 1990
- [j1]Xiaoqiu Huang, Ross C. Hardison, Webb Miller:
A space-efficient algorithm for local similarities. Comput. Appl. Biosci. 6(4): 373-381 (1990)
Conference and Workshop Papers
- 2019
- [c5]Jens Lichtenberg, Guanjue Xiang
, Elisabeth F. Heuston
, Belinda Giardine, Cheryl A. Keller, Ross C. Hardison, David M. Bodine, Yu Zhang:
Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation. BIBE 2019: 240-243 - 2009
- [c4]Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller:
Aligning Two Genomic Sequences That Contain Duplications. RECOMB-CG 2009: 98-110 - [c3]Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller:
Whole-Genome Analysis of Gene Conversion Events. RECOMB-CG 2009: 181-192 - 1997
- [c2]Nikola Stojanovic, Piotr Berman, Deborah Gumucio, Ross C. Hardison, Webb Miller:
A Linear-Time Algorithm for the 1-Mismatch Problem. WADS 1997: 126-135 - 1995
- [c1]Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison:
A database for globin gene expression data. HICSS (5) 1995: 62-71
Coauthor Index
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