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2020 – today
- 2024
[j41]Nicolas Haas, Julie Dawn Thompson, Jean-Paul Renaud, Kirsley Chennen, Olivier Poch
:
StopKB: a comprehensive knowledgebase for nonsense suppression therapies. Database J. Biol. Databases Curation 2024 (2024)- 2023
- [j40]Arnaud Kress, Olivier Poch, Odile Lecompte, Julie Dawn Thompson:
Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events. Frontiers Bioinform. 3 (2023) - 2021
- [j39]Julie Dawn Thompson, Raymond Ripp, Claudine Mayer, Olivier Poch, Christian J. Michel:
Potential role of the X circular code in the regulation of gene expression. Biosyst. 203: 104368 (2021) - [j38]Nicolas Scalzitti, Arnaud Kress, Romain Orhand, Thomas Weber, Luc Moulinier, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson:
Spliceator: multi-species splice site prediction using convolutional neural networks. BMC Bioinform. 22(1): 561 (2021) - 2020
- [j37]Corentin Meyer, Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson:
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes. BMC Bioinform. 21(1): 513 (2020)
2010 – 2019
- 2019
- [j36]Gopal Dila, Christian J. Michel, Olivier Poch, Raymond Ripp, Julie Dawn Thompson:
Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes. Biosyst. 175: 57-74 (2019) - [j35]Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Res. 47(Database-Issue): D411-D418 (2019) - 2018
- [j34]Arnaud Kress, Odile Lecompte, Olivier Poch, Julie Dawn Thompson:
PROBE: analysis and visualization of protein block-level evolution. Bioinform. 34(19): 3390-3392 (2018) - 2016
- [j33]Renaud Vanhoutrève, Arnaud Kress, Baptiste Legrand, Hélène Gass, Olivier Poch, Julie Dawn Thompson:
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. BMC Bioinform. 17: 271 (2016) - 2015
- [j32]Benjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 2.0: Software and database updates. Bioinform. 31(3): 447-448 (2015) - 2014
- [j31]Walyd Khenoussi, Renaud Vanhoutrève, Olivier Poch, Julie Dawn Thompson:
SIBIS: a Bayesian model for inconsistent protein sequence estimation. Bioinform. 30(17): 2432-2439 (2014) - [j30]Carlos Bermejo-Das-Neves, Hoan-Ngoc Nguyen, Olivier Poch, Julie Dawn Thompson:
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). BMC Bioinform. 15: 111 (2014) - [j29]Hoan Nguyen, L. Michel, Julie Dawn Thompson, Olivier Poch:
Heterogeneous biological data integration with declarative query language. IBM J. Res. Dev. 58(2/3) (2014) - [p1]Hoan Nguyen, Julie Dawn Thompson, Patrick Schutz, Olivier Poch:
Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 255-270 - 2013
- [j28]Alexis Allot, Yannick-Noël Anno, Laetitia Poidevin, Raymond Ripp, Olivier Poch, Odile Lecompte:
PARSEC: PAtteRn SEarch and Contextualization. Bioinform. 29(20): 2643-2644 (2013) - 2012
- [j27]Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
MSV3d: database of human MisSense variants mapped to 3D protein structure. Database J. Biol. Databases Curation 2012 (2012) - [j26]Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch:
Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. Int. J. Comput. Biol. Drug Des. 5(3/4): 245-260 (2012) - [j25]Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
KD4v: comprehensible knowledge discovery system for missense variant. Nucleic Acids Res. 40(Web-Server-Issue): 71-75 (2012) - 2011
- [j24]Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinform. 12: 11 (2011) - [j23]Laurent-Philippe Albou, Olivier Poch, Dino Moras:
M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces. Nucleic Acids Res. 39(1): 30-43 (2011) - [c5]Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch:
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. BIBM Workshops 2011: 201-208 - 2010
- [j22]Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes:
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinform. 11: 588 (2010) - [j21]Claude Berge, Nicolas Froloff, Ravi Kiran Reddy Kalathur, Myriam Maumy, Olivier Poch, Wolfgang Raffelsberger, Nicolas Wicker:
Multidimensional Fitting for Multivariate Data Analysis. J. Comput. Biol. 17(5): 723-732 (2010) - [c4]Nicolas Bard, Raphael Bolze, Eddy Caron, Frédéric Desprez, Michaël Heymann, Anne Friedrich, Luc Moulinier, Ngoc-Hoan Nguyen, Olivier Poch, Thierry Toursel:
Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders. HealthGrid 2010: 124-133
2000 – 2009
- 2009
- [j20]Mohamed Radhouene Aniba, Sophie Siguenza, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie Dawn Thompson:
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. Briefings Bioinform. 10(1): 11-23 (2009) - [j19]Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson:
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinform. 10: 383 (2009) - [c3]Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger:
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. INFORSID 2009: 413-428 - 2008
- [j18]Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch:
RReportGenerator: automatic reports from routine statistical analysis using R. Bioinform. 24(2): 276-278 (2008) - [j17]Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson:
A new protein linear motif benchmark for multiple sequence alignment software. BMC Bioinform. 9 (2008) - [j16]Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch:
A maximum likelihood approximation method for Dirichlet's parameter estimation. Comput. Stat. Data Anal. 52(3): 1315-1322 (2008) - [c2]Hoan Nguyen, Guillaume Berthommier, Anne Friedrich, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Olivier Poch:
Introduction du nouveau centre de données biomédicales Décrypthon. CORIA 2008: 151-164 - 2007
- [j15]Anne Friedrich, Raymond Ripp, Nicolas B. Garnier, Emmanuel Bettler, Gilbert Deléage, Olivier Poch, Luc Moulinier:
Blast sampling for structural and functional analyses. BMC Bioinform. 8 (2007) - [j14]Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol:
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res. 35(Database-Issue): 815-822 (2007) - [c1]Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl:
A Geometric Representation of Protein Sequences. BIBM 2007: 135-142 - 2006
- [j13]Nicolas B. Garnier, Anne Friedrich, Raphael Bolze, Emmanuel Bettler, Luc Moulinier, Christophe Geourjon, Julie Dawn Thompson, Gilbert Deléage, Olivier Poch:
MAGOS: multiple alignment and modelling server. Bioinform. 22(17): 2164-2165 (2006) - [j12]Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch:
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7: 318 (2006) - [j11]Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte:
ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res. 34(Database-Issue): 338-343 (2006) - [j10]Aurélie Lardenois, Frédéric Chalmel, Laurent Bianchetti, José-Alain Sahel, Thierry Léveillard, Olivier Poch:
PromAn: an integrated knowledge-based web server dedicated to promoter analysis. Nucleic Acids Res. 34(Web-Server-Issue): 578-583 (2006) - 2005
- [j9]Veronique Prigent, Jean-Claude Thierry, Olivier Poch, Frédéric Plewniak:
DbW: automatic update of a functional family-specific multiple alignment. Bioinform. 21(8): 1437-1442 (2005) - [j8]Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch:
GOAnno: GO annotation based on multiple alignment. Bioinform. 21(9): 2095-2096 (2005) - [j7]Laurent Bianchetti, Julie Dawn Thompson, Odile Lecompte, Frédéric Plewniak, Olivier Poch:
Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data. J. Bioinform. Comput. Biol. 3(4): 929-948 (2005) - 2003
- [j6]Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch:
RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments. Bioinform. 19(9): 1155-1161 (2003) - [j5]Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch:
PipeAlign: a new toolkit for protein family analysis. Nucleic Acids Res. 31(13): 3829-3832 (2003) - 2001
- [j4]Anne Bahr, Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch:
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Res. 29(1): 323-326 (2001) - 2000
- [j3]Frédéric Plewniak, Julie Dawn Thompson, Olivier Poch:
Ballast: Blast post-processing based on locally conserved segments. Bioinform. 16(9): 750-759 (2000)
1990 – 1999
- 1999
- [j2]Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch:
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinform. 15(1): 87-88 (1999) - [j1]Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch:
A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27(13): 2682-2690 (1999)
Coauthor Index
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last updated on 2024-11-07 21:29 CET by the dblp team
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