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Sarvesh Nikumbh

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affiliation: Max Planck Institute for Informatics, Saarbrücken, Germany
affiliation: University of Pune, Centre for Modeling and Simulation, Pune, India

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Books and Theses

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2019
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Sarvesh Nikumbh:
Interpretable machine learning methods for prediction and analysis of genome regulation in 3D. Saarland University, Germany, 2019

Journal Articles

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2023
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Sarvesh Nikumbh, Boris Lenhard:
Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation. PLoS Comput. Biol. 19(11) (2023)
2017
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Sarvesh Nikumbh, Nico Pfeifer:
Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization. BMC Bioinform. 18(1): 218:1-218:16 (2017)

Conference and Workshop Papers

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2017
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Sarvesh Nikumbh, Peter Ebert, Nico Pfeifer:
All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels. WABI 2017: 16:1-16:14
2012
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Sarvesh Nikumbh, Shameek Ghosh, Valadi K. Jayaraman:
Biogeography-based informative gene selection and cancer classification using SVM and Random Forests. IEEE Congress on Evolutionary Computation 2012: 1-6

Informal and Other Publications

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2012
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  - journals/corr/abs-1207-3285
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Sarvesh Nikumbh, Shameek Ghosh, Valadi K. Jayaraman:
Biogeography-Based Informative Gene Selection and Cancer Classification Using SVM and Random Forests. CoRR abs/1207.3285 (2012)
2011
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  - journals/corr/abs-1109-6838
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Sarvesh Nikumbh, Joeprakash Nathaman, Rahul Vartak:
Distributed Air Traffic Control : A Human Safety Perspective. CoRR abs/1109.6838 (2011)

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