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Matthew E. Ritchie
Person information
- affiliation: University of Melbourne, Australia
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2020 – today
- 2024
- [j19]Oliver Cheng, Min Hao Ling, Changqing Wang
, Shuyi Wu
, Matthew E. Ritchie, Jonathan Göke, Noorul Amin, Nadia M. Davidson
:
Flexiplex: a versatile demultiplexer and search tool for omics data. Bioinform. 40(3) (2024) - 2021
- [j18]Shian Su
, Quentin Gouil
, Marnie E. Blewitt, Dianne Cook
, Peter F. Hickey
, Matthew E. Ritchie
:
NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j17]Shian Su, Luyi Tian, Xueyi Dong
, Peter F. Hickey
, Saskia Freytag
, Matthew E. Ritchie:
CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods. Bioinform. 36(7): 2288-2290 (2020)
2010 – 2019
- 2019
- [i2]Shian Su
, Vincent J. Carey
, Lori A. Shepherd, Matthew E. Ritchie
, Martin T. Morgan, Sean R. Davis
:
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. F1000Research 8: 752 (2019) - 2018
- [j16]Luyi Tian
, Shian Su, Xueyi Dong
, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton
, Shalin H. Naik
, Matthew E. Ritchie
:
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data. PLoS Comput. Biol. 14(8) (2018) - 2017
- [j15]Monther Alhamdoosh
, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan
, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie
:
Combining multiple tools outperforms individual methods in gene set enrichment analyses. Bioinform. 33(3): 414-424 (2017) - [j14]Shian Su, Charity W. Law
, Casey Ah-Cann
, Marie-Liesse Asselin-Labat, Marnie E. Blewitt
, Matthew E. Ritchie
:
Glimma: interactive graphics for gene expression analysis. Bioinform. 33(13): 2050-2052 (2017) - 2014
- [j13]Ruijie Liu
, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie
:
KRLMM: an adaptive genotype calling method for common and low frequency variants. BMC Bioinform. 15: 158 (2014) - 2013
- [i1]Mike L. Smith
, Keith A. Baggerly, Henrik Bengtsson
, Matthew E. Ritchie
, Kasper D. Hansen
:
illuminaio: An open source IDAT parsing tool for Illumina microarrays. F1000Research 2: 264 (2013) - 2012
- [j12]Ruijie Liu
, Ana-Teresa Maia
, Roslin Russell, Carlos Caldas
, Bruce A. Ponder, Matthew E. Ritchie
:
Allele-specific expression analysis methods for high-density SNP microarray data. Bioinform. 28(8): 1102-1108 (2012) - 2011
- [j11]Matthew E. Ritchie
, Ruijie Liu
, Benilton S. Carvalho
, Rafael A. Irizarry:
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips. BMC Bioinform. 12: 68 (2011) - [j10]Matthew E. Ritchie
, Mark J. Dunning
, Mike L. Smith
, Wei Shi, Andy G. Lynch
:
BeadArray Expression Analysis Using Bioconductor. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j9]Matthew E. Ritchie, Matthew S. Forrest
, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré:
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. BMC Bioinform. 11: 280 (2010)
2000 – 2009
- 2009
- [j8]Nava Whiteford, Tom Skelly, Christina Curtis, Matthew E. Ritchie
, Andrea Löhr, Alexander Wait Zaranek, Irina I. Abnizova, Clive Brown:
Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinform. 25(17): 2194-2199 (2009) - [j7]Matthew E. Ritchie
, Benilton S. Carvalho
, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry:
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinform. 25(19): 2621-2623 (2009) - [j6]Wei Shi, Ashish Banerjee, Matthew E. Ritchie
, Steve Gerondakis, Gordon K. Smyth
:
Illumina WG-6 BeadChip strips should be normalized separately. BMC Bioinform. 10: 372 (2009) - 2008
- [j5]Jonathan M. Cairns
, Mark J. Dunning
, Matthew E. Ritchie
, Roslin Russell, Andy G. Lynch
:
BASH: a tool for managing BeadArray spatial artefacts. Bioinform. 24(24): 2921-2922 (2008) - [j4]Mark J. Dunning
, Nuno L. Barbosa-Morais
, Andy G. Lynch
, Simon Tavaré, Matthew E. Ritchie
:
Statistical issues in the analysis of Illumina data. BMC Bioinform. 9 (2008) - 2007
- [j3]Mark J. Dunning
, Mike L. Smith
, Matthew E. Ritchie
, Simon Tavaré:
beadarray: R classes and methods for Illumina bead-based data. Bioinform. 23(16): 2183-2184 (2007) - [j2]Matthew E. Ritchie
, Jeremy David Silver
, Alicia Oshlack
, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth
:
A comparison of background correction methods for two-colour microarrays. Bioinform. 23(20): 2700-2707 (2007) - 2006
- [j1]Matthew E. Ritchie
, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar
, Alexander Dobrovic
, Andrew J. Holloway, Gordon K. Smyth
:
Empirical array quality weights in the analysis of microarray data. BMC Bioinform. 7: 261 (2006)
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last updated on 2024-08-05 21:23 CEST by the dblp team
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