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ORCIDW. Evan Johnson
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- affiliation: Boston University, School of Public Health, Department of Biostatistics, MA, USA
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Journal Articles
- 2023
[j11]Dakota Y. Hawkins, Daniel T. Zuch
, James Huth, Nahomie Rodriguez-Sastre, Kelley R. McCutcheon, Abigail Glick, Alexandra T. Lion, Christopher F. Thomas, Abigail E. Descoteaux, William Evan Johnson, Cynthia A Bradham:
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinform. 39(5) (2023)- [j10]Yichen Wang, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Akavoor, Xinyun Cao, Salam Alabdullatif, Syed Ali Zaib, Zhe Wang, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell:
Interactive analysis of single-cell data using flexible workflows with SCTK2. Patterns 4(8): 100814 (2023) - 2021
- [j9]Yuqing Zhang, Prasad Patil, W. Evan Johnson, Giovanni Parmigiani:
Robustifying genomic classifiers to batch effects via ensemble learning. Bioinform. 37(11): 1521-1527 (2021) - 2019
- [j8]Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell:
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data. BMC Bioinform. 20(1): 222:1-222:9 (2019) - 2018
- [j7]Yuqing Zhang, David F. Jenkins, Solaiappan Manimaran, W. Evan Johnson:
Alternative empirical Bayes models for adjusting for batch effects in genomic studies. BMC Bioinform. 19(1): 262:1-262:15 (2018) - 2016
- [j6]Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush, Benjamin Haibe-Kains, Héctor Corrada Bravo, W. Evan Johnson:
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32(24): 3836-3838 (2016) - 2015
- [j5]Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson:
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinform. 31(11): 1745-1753 (2015) - [j4]Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo:
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinform. 31(22): 3666-3672 (2015) - 2013
- [j3]Changjin Hong, Nathan L. Clement, Spencer Clement, Saher Sue Hammoud, Douglas T. Carrell, Bradley R. Cairns, Quinn Snell, Mark J. Clement, William Evan Johnson:
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinform. 14: 337 (2013) - 2012
- [j2]Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey:
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28(6): 882-883 (2012) - 2010
- [j1]Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson:
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26(1): 38-45 (2010)
Conference and Workshop Papers
- 2012
- [c2]Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson:
Parallel Pair-HMM SNP Detection. IPDPS Workshops 2012: 675-683 - 2011
- [c1]Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson:
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops 2011: 435-443
Coauthor Index
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