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2020 – today
- 2023
[j11]Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres
:
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. BMC Bioinform. 24(1): 340 (2023)- 2021
- [j10]Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres:
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. BMC Bioinform. 22(1): 224 (2021) - [j9]Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres:
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. BMC Bioinform. 22(1): 381 (2021) - [i2]Tathagata Banerjee, Matthew Kollada, Pablo Gersberg, Oscar Rodriguez, Jane Tiller, Andrew E. Jaffe, John Reynders:
Predicting Mood Disorder Symptoms with Remotely Collected Videos Using an Interpretable Multimodal Dynamic Attention Fusion Network. CoRR abs/2109.03029 (2021)
2010 – 2019
- 2018
- [j8]Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos:
A Bayesian framework for multiple trait colocalization from summary association statistics. Bioinform. 34(15): 2538-2545 (2018) - 2017
- [j7]Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead:
Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. 33(24): 4033-4040 (2017) - 2016
- [j6]Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni:
Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 17: 302 (2016) - 2015
- [j5]Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek:
Polyester: simulating RNA-seq datasets with differential transcript expression. Bioinform. 31(17): 2778-2784 (2015) - [j4]Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni:
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 16: 372:1-372:10 (2015) - [i1]Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek:
regionReport: Interactive reports for region-based analyses. F1000Research 4: 105 (2015) - 2014
- [j3]Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry:
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinform. 30(10): 1363-1369 (2014) - 2013
- [j2]Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek:
Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinform. 14: 360 (2013) - 2012
- [j1]Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey:
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28(6): 882-883 (2012)
Coauthor Index
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