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ORCIDLars Wienbrandt
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Books and Theses
- 2016
[b1]Lars Wienbrandt:
FPGAs in Bioinformatics - Implementation and Evaluation of Common Bioinformatics Algorithms in Reconfigurable Logic. University of Kiel, 2016
Journal Articles
- 2022
- [j6]Lars Wienbrandt
, David Ellinghaus:
EagleImp: fast and accurate genome-wide phasing and imputation in a single tool. Bioinform. 38(22): 4999-5006 (2022) - 2019
- [j5]Lars Wienbrandt, Jan Christian Kässens, Matthias Hübenthal, David Ellinghaus:
1000× faster than PLINK: Combined FPGA and GPU accelerators for logistic regression-based detection of epistasis. J. Comput. Sci. 30: 183-193 (2019) - 2015
- [j4]Jorge González-Domínguez, Jan Christian Kässens, Lars Wienbrandt, Bertil Schmidt:
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model. Int. J. High Perform. Comput. Appl. 29(4): 506-510 (2015) - [j3]Jan Christian Kässens, Lars Wienbrandt, Jorge González-Domínguez, Bertil Schmidt, Manfred Schimmler:
High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs. J. Comput. Sci. 9: 131-136 (2015) - [j2]Jorge González-Domínguez, Lars Wienbrandt, Jan Christian Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt:
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 982-994 (2015) - 2012
- [j1]Christoph Starke, Vasco Grossmann, Lars Wienbrandt, Sven Koschnicke, John Carstens, Manfred Schimmler:
Optimizing Investment Strategies with the Reconfigurable Hardware Platform RIVYERA. Int. J. Reconfigurable Comput. 2012: 646984:1-646984:10 (2012)
Conference and Workshop Papers
- 2020
- [c18]Lars Wienbrandt, Jan Christian Kässens, David Ellinghaus:
Reference-Based Haplotype Phasing with FPGAs. ICCS (3) 2020: 481-495 - [c17]Diane Duroux, Héctor Climente-González, Lars Wienbrandt, Kristel Van Steen:
Network Aggregation to Enhance Results Derived from Multiple Analytics. AIAI (1) 2020: 128-140 - 2018
- [c16]Lars Wienbrandt, Jan Christian Kässens, Matthias Hübenthal, David Ellinghaus:
1, 000x Faster Than PLINK: Genome-Wide Epistasis Detection with Logistic Regression Using Combined FPGA and GPU Accelerators. ICCS (2) 2018: 368-381 - 2017
- [c15]Lars Wienbrandt, Jan Christian Kässens, Matthias Hübenthal, David Ellinghaus:
Fast Genome-Wide Third-order SNP Interaction Tests with Information Gain on a Low-cost Heterogeneous Parallel FPGA-GPU Computing Architecture. ICCS 2017: 596-605 - 2016
- [c14]Jan Christian Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González-Domínguez, Bertil Schmidt:
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS. ASAP 2016: 170-175 - [c13]Sven Gundlach, Jan Christian Kässens, Lars Wienbrandt:
Genome-Wide Association Interaction Studies with MB-MDR and maxT multiple testing correction on FPGAs. ICCS 2016: 639-649 - 2014
- [c12]Lars Wienbrandt:
The FPGA-Based High-Performance Computer RIVYERA for Applications in Bioinformatics. CiE 2014: 383-392 - [c11]Jan Christian Kässens, Jorge González-Domínguez, Lars Wienbrandt, Bertil Schmidt:
UPC++ for bioinformatics: A case study using genome-wide association studies. CLUSTER 2014: 248-256 - [c10]Jorge González-Domínguez, Bertil Schmidt, Jan Christian Kässens, Lars Wienbrandt:
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. Euro-Par 2014: 680-691 - [c9]Lars Wienbrandt, Jan Christian Kässens, Jorge González-Domínguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler:
FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. ICCS 2014: 220-230 - [c8]Ayman Abbas, Rian Voss, Lars Wienbrandt, Manfred Schimmler:
An efficient implementation of PBKDF2 with RIPEMD-160 on multiple FPGAs. ICPADS 2014: 454-461 - 2012
- [c7]Ayman Abbas, Claas Anders Rathje, Lars Wienbrandt, Manfred Schimmler:
Dictionary Attack on TrueCrypt with RIVYERA S3-5000. ICPADS 2012: 93-100 - [c6]Lars Wienbrandt, Daniel Siebert, Manfred Schimmler:
Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA. ISBRA 2012: 275-286 - [c5]Christoph Starke, Vasco Grossmann, Lars Wienbrandt, Manfred Schimmler:
An FPGA Implementation of an Investment Strategy Processor. ICCS 2012: 1880-1889 - 2011
- [c4]Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Florian Schatz, Manfred Schimmler:
Massively parallel FPGA-based implementation of BLASTp with the two-hit method. ICCS 2011: 1967-1976 - 2010
- [c3]Lars Wienbrandt, Manfred Schimmler:
Collecting Statistical Information in DNA Sequences for the Detection of Special Motifs. BIOCOMP 2010: 274-278 - [c2]Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Carol May Yen Yeo, Manfred Schimmler:
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics. ICCS 2010: 1027-1034 - 2008
- [c1]Jan Schröder, Lars Wienbrandt, Gerd Pfeiffer, Manfred Schimmler:
Massively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA. PRIB 2008: 436-447
Coauthor Index
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