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ORCIDElisabeth Remy
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Journal Articles
- 2024
[j15]Elisabeth Remy, Paul Ruet:
From multivalued to Boolean functions: Preservation of soft nested canalization. Theor. Comput. Sci. 982: 114277 (2024)- 2023
- [j14]Stephen P. Chapman
, Estelle Duprez, Elisabeth Remy:
Logical modelling of myelofibrotic microenvironment predicts dysregulated progenitor stem cell crosstalk. Biosyst. 231: 104961 (2023) - 2019
- [j13]Alberto Valdeolivas, Laurent Tichit, Claire Navarro, Sophie Perrin, Gaëlle Odelin, Nicolas Levy, Pierre Cau, Elisabeth Remy, Anaïs Baudot:
Random walk with restart on multiplex and heterogeneous biological networks. Bioinform. 35(3): 497-505 (2019) - 2015
- [j12]Åsmund Flobak, Anaïs Baudot, Elisabeth Remy, Liv Thommesen, Denis Thieffry, Martin Kuiper, Astrid Lægreid:
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PLoS Comput. Biol. 11(8) (2015) - 2012
- [j11]Gilles Didier, Elisabeth Remy:
Relations between gene regulatory networks and cell dynamics in Boolean models. Discret. Appl. Math. 160(15): 2147-2157 (2012) - 2011
- [j10]Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry:
Petri net representation of multi-valued logical regulatory graphs. Nat. Comput. 10(2): 727-750 (2011) - [j9]Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya:
Dynamically consistent reduction of logical regulatory graphs. Theor. Comput. Sci. 412(21): 2207-2218 (2011) - 2008
- [j8]Elisabeth Remy, Paul Ruet, Denis Thieffry:
Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework. Adv. Appl. Math. 41(3): 335-350 (2008) - [j7]Claudine Chaouiya, Elisabeth Remy, Denis Thieffry:
Petri net modelling of biological regulatory networks. J. Discrete Algorithms 6(2): 165-177 (2008) - 2007
- [j6]Elisabeth Remy, Paul Ruet:
On Differentiation and Homeostatic Behaviours of Boolean Dynamical Systems. Trans. Comp. Sys. Biology 8: 92-101 (2007) - 2006
- [j5]Claudine Chaouiya, Elisabeth Remy, Denis Thieffry:
Qualitative Petri Net Modelling of Genetic Networks. Trans. Comp. Sys. Biology 6: 95-112 (2006) - [j4]Elisabeth Remy, Paul Ruet, Luis Eduardo Mendoza, Denis Thieffry, Claudine Chaouiya:
From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits. Trans. Comp. Sys. Biology 7: 56-72 (2006) - [j3]Elisabeth Remy, Paul Ruet:
On Differentiation and Homeostatic Behaviours of Boolean Dynamical Systems. Trans. Comp. Sys. Biology 7: 153-162 (2006) - 2002
- [j2]Gilles Didier, Pierre Brézellec, Elisabeth Remy, Alain Hénaut:
GeneANOVA-gene expression analysis of variance. Bioinform. 18(3): 490-491 (2002) - 2001
- [j1]Andrey Piatnitski, Elisabeth Remy:
Homogenization of Elliptic Difference Operators. SIAM J. Math. Anal. 33(1): 53-83 (2001)
Conference and Workshop Papers
- 2024
- [c10]Claudine Chaouiya, Pedro T. Monteiro, Elisabeth Remy:
Logical Modelling, Some Recent Methodological Advances Illustrated. AUTOMATA 2024: 3-22 - 2023
- [c9]Elisabeth Remy, Paul Ruet:
Average Sensitivity of Nested Canalizing Multivalued Functions. CMSB 2023: 144-156 - 2010
- [c8]Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry:
Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties. CCA 2010: 524-529 - 2009
- [c7]Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya:
A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties. CMSB 2009: 266-280 - 2008
- [c6]Elisabeth Remy, Paul Ruet:
From minimal signed circuits to the dynamics of Boolean regulatory networks. ECCB 2008: 220-226 - 2006
- [c5]Elisabeth Remy, Paul Ruet, Denis Thieffry:
Positive or Negative Regulatory Circuit Inference from Multilevel Dynamics. POSTA 2006: 263-270 - 2005
- [c4]E. Simão, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya:
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli. ECCB/JBI 2005: 196 - 2004
- [c3]Claudine Chaouiya, Elisabeth Remy, Paul Ruet, Denis Thieffry:
Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets. ICATPN 2004: 137-156 - 2003
- [c2]Elisabeth Remy, Brigitte Mossé, Claudine Chaouiya, Denis Thieffry:
A description of dynamical graphs associated to elementary regulatory circuits. ECCB 2003: 172-178 - [c1]Claudine Chaouiya, Elisabeth Remy, Brigitte Mossé, Denis Thieffry:
Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework. POSTA 2003: 119-126
Informal and Other Publications
- 2024
- [i3]Nadine Ben Boina, Brigitte Mossé, Anaïs Baudot, Elisabeth Remy:
Refining Boolean models with the partial most permissive scheme. CoRR abs/2407.09954 (2024) - 2020
- [i2]Léo Pio-Lopez, Alberto Valdeolivas, Laurent Tichit, Elisabeth Remy, Anaïs Baudot:
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach. CoRR abs/2008.10085 (2020) - 2014
- [i1]Nuno D. Mendes, Pedro T. Monteiro, Jorge Carneiro, Elisabeth Remy, Claudine Chaouiya:
Quantification of reachable attractors in asynchronous discrete dynamics. CoRR abs/1411.3539 (2014)
Coauthor Index
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