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ORCIDSohrab P. Shah
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2020 – today
- 2020
[j14]Camila P. E. de Souza
, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang, Edmund Su, Tony Hui, Qi Cao, Marcus Wong, Michelle Moksa, Richard A. Moore, Martin Hirst, Samuel Aparicio, Sohrab P. Shah:
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data. PLoS Comput. Biol. 16(9) (2020)
2010 – 2019
- 2019
- [j13]Tyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah:
Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models. PLoS Comput. Biol. 15(2) (2019) - [i2]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2016
- [j12]Jiarui Ding, Sohrab P. Shah, Anne Condon:
densityCut: an efficient and versatile topological approach for automatic clustering of biological data. Bioinform. 32(17): 2567-2576 (2016) - 2015
- [i1]Andrew W. McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp:
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples. CoRR abs/1504.03080 (2015) - 2013
- [j11]Jiarui Ding, Sohrab P. Shah:
A robust hidden semi-Markov model with application to aCGH data processing. Int. J. Data Min. Bioinform. 8(4): 427-442 (2013) - 2012
- [j10]Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah:
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinform. 28(2): 167-175 (2012) - [j9]Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah:
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinform. 28(7): 907-913 (2012) - [c5]Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp:
Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. RECOMB 2012: 181-182 - 2011
- [j8]Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp:
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinform. 27(11): 1481-1488 (2011) - [j7]Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah:
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. PLoS Comput. Biol. 7(5) (2011) - 2010
- [j6]Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah:
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinform. 26(6): 730-736 (2010) - [j5]Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra:
Genomic analysis of a rare human tumor. BMC Bioinform. 11(S-4): O3 (2010) - [c4]Jiarui Ding, Sohrab P. Shah:
Robust hidden semi-Markov modeling of array CGH data. BIBM 2010: 603-608
2000 – 2009
- 2009
- [j4]Sohrab P. Shah, K-John Cheung Jr., Nathalie A. Johnson, Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy:
Model-based clustering of array CGH data. Bioinform. 25(12) (2009) - 2007
- [c3]Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy:
Modeling recurrent DNA copy number alterations in array CGH data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 450-458 - 2006
- [c2]Mehrnoush Khojasteh, Bradley P. Coe, Sohrab P. Shah, Rabab K. Ward, Wan L. Lam, Calum MacAulay:
A Novel Algorithm For the Analysis Of Array Cgh Data. ICASSP (2) 2006: 1020-1023 - [c1]Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy:
Integrating copy number polymorphisms into array CGH analysis using a robust HMM. ISMB (Supplement of Bioinformatics) 2006: 431-439 - 2005
- [j3]Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette:
Atlas - a data warehouse for integrative bioinformatics. BMC Bioinform. 6: 34 (2005) - 2004
- [j2]Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette:
Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinform. 5: 40 (2004) - 2003
- [j1]Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette:
GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results. Bioinform. 19(10): 1296-1297 (2003)
Coauthor Index
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