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Journal Articles
- 2024
[j12]Evgeniya A. Antropova
, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko:
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. 20(3) (2024)- [j11]Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek:
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. J. Integr. Bioinform. 20(3) (2024) - 2020
- [j10]Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostyanov, Vladimir A. Ivanisenko:
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. BMC Bioinform. 21-S(11): 228 (2020) - 2019
- [j9]Vladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik:
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression. BMC Bioinform. 20-S(1): 5-15 (2019) - 2018
- [j8]Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko:
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. 15(4) (2018) - 2017
- [j7]Irina V. Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko:
SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes. J. Bioinform. Comput. Biol. 15(2): 1650044:1-1650044:14 (2017) - 2015
- [j6]Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov:
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. 9(S-2): S2 (2015) - [j5]Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko:
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. 9(S-2): S4 (2015) - 2013
- [j4]Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11(1) (2013) - 2012
- [j3]Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. 11(3-4): 149-161 (2012) - [j2]Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. 40(Database-Issue): 278-283 (2012) - 2010
- [j1]Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7(1) (2010)
Conference and Workshop Papers
- 2021
- [c2]Aleksey M. Mukhin, Fedor V. Kazantsev, Alexandra I. Klimenko, Tatiana N. Lakhova, Pavel S. Demenkov, Sergey A. Lashin:
The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains. PaCT 2021: 445-450 - 2007
- [c1]Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov:
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP 2007: 452-455
Parts in Books or Collections
- 2014
- [p1]Timofey V. Ivanisenko, Pavel S. Demenkov, Vladimir A. Ivanisenko:
Text Mining on PubMed. Approaches in Integrative Bioinformatics 2014: 161-170
Coauthor Index
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