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Journal Articles
- 2015
[j9]Lucian Paul Smith
, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J. Myers, Ion I. Moraru, Wolfram Liebermeister:
SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3. J. Integr. Bioinform. 12(2) (2015)- 2009
- [j8]Sebastian Mirschel, Katrin Steinmetz, Michael Rempel, Martin Ginkel, Ernst Dieter Gilles:
PROMOT: modular modeling for systems biology. Bioinform. 25(5): 687-689 (2009) - 2007
- [j7]Mykhaylo Krasnyk, Martin Ginkel, Michael Mangold, Achim Kienle:
Numerical analysis of higher order singularities in chemical process models. Comput. Chem. Eng. 31(9): 1100-1110 (2007) - 2006
- [j6]Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst Dieter Gilles, Martin Ginkel:
Visual setup of logical models of signaling and regulatory networks with ProMoT. BMC Bioinform. 7: 506 (2006) - 2004
- [j5]Michael Mangold, Martin Ginkel, Ernst Dieter Gilles:
A model library for membrane reactors implemented in the process modelling tool PROMoT. Comput. Chem. Eng. 28(3): 319-332 (2004) - [j4]Andreas Kremling, Steffen Klamt, Martin Ginkel, Ernst Dieter Gilles:
Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme (Workbench for Model Set Up, Simulation, and Analysis of Cellular Systems). it Inf. Technol. 46(1): 12-19 (2004) - 2003
- [j3]Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles:
FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinform. 19(2): 261-269 (2003) - [j2]Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang:
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19(4): 524-531 (2003) - [j1]Martin Ginkel, Andreas Kremling, Torsten Nutsch, R. Rehner, Ernst Dieter Gilles:
Modular Modeling of Cellular Systems with ProMoT/Diva. Bioinform. 19(9): 1169-1176 (2003)
Conference and Workshop Papers
- 2008
- [c2]Julio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles:
Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. ECCB 2008: 213-219 - 2003
- [c1]Andreas Kremling, Katja Bettenbrock, Sophia Fischer, Martin Ginkel, Thomas Sauter, Ernst Dieter Gilles:
Towards Whole Cell "in Silico" Models for Cellular Systems: Model Set-up and Model Validation. POSTA 2003: 95-102
Coauthor Index
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