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ORCIDAnuradha Wickramarachchi
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Journal Articles
- 2024
[j7]Vijini Mallawaarachchi
, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards:
Solving genomic puzzles: computational methods for metagenomic binning. Briefings Bioinform. 25(5) (2024)- 2022
- [j6]Anuradha Wickramarachchi, Yu Lin:
Binning long reads in metagenomics datasets using composition and coverage information. Algorithms Mol. Biol. 17(1): 14 (2022) - [j5]Anuradha Wickramarachchi, Yu Lin:
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 57-67 (2022) - 2021
- [j4]Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin:
Improving metagenomic binning results with overlapped bins using assembly graphs. Algorithms Mol. Biol. 16(1): 3 (2021) - 2020
- [j3]Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin:
GraphBin: refined binning of metagenomic contigs using assembly graphs. Bioinform. 36(11): 3307-3313 (2020) - [j2]Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin:
MetaBCC-LR: metagenomics binning by coverage and composition for long reads. Bioinform. 36(Supplement-1): i3-i11 (2020) - [j1]Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi:
Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation. Int. J. Online Biomed. Eng. 16(7): 4-20 (2020)
Conference and Workshop Papers
- 2022
- [c8]Anuradha Wickramarachchi, Yu Lin:
Metagenomics Binning of Long Reads Using Read-Overlap Graphs. RECOMB-CG 2022: 260-278 - 2021
- [c7]Anuradha Wickramarachchi, Yu Lin:
LRBinner: Binning Long Reads in Metagenomics Datasets. WABI 2021: 11:1-11:18 - 2020
- [c6]Kalana Wijegunarathna, Uditha Maduranga, Sadeep Weerasinghe, Indika Perera, Anuradha Wickramarachchi:
MetaG: a comprehensive visualization tool to explore metagenomes. BIBM 2020: 460-463 - [c5]Ayesh Weerasinghe, Kalana Wijethunga, Randika Jayasekara, Indika Perera, Anuradha Wickramarachchi:
Resource Aware Task Clustering for Scientific Workflow Execution in High Performance Computing Environments. HPCC/DSS/SmartCity 2020: 255-262 - [c4]Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin:
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. WABI 2020: 8:1-8:21 - 2018
- [c3]Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya:
Efficient Bioinformatics Computations through GPU Accelerated Web Services. ICACS 2018: 94-98 - [c2]Anuradha Wickramarachchi, Dulaj Atapattu, Pamoda Wimalasiri, Ravidu Mallawa Arachchi, Gihan Dias:
Use of nomadic computing devices for storage synchronization. ICOIN 2018: 673-678 - [c1]Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita:
Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows. TALE 2018: 228-235
Coauthor Index
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