![](https://dblp1.uni-trier.de/img/logo.ua.320x120.png)
![](https://dblp1.uni-trier.de/img/dropdown.dark.16x16.png)
![](https://dblp1.uni-trier.de/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp1.uni-trier.de/img/search.dark.16x16.png)
![search dblp](https://dblp1.uni-trier.de/img/search.dark.16x16.png)
default search action
Antti Häkkinen
Person information
Refine list
![note](https://dblp1.uni-trier.de/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2021
- [j21]Liye He
, Daria Bulanova, Jaana Oikkonen
, Antti Häkkinen
, Kaiyang Zhang, Shuyu Zheng
, Wenyu Wang, Erdogan Pekcan Erkan, Olli Carpén, Titta Joutsiniemi, Sakari Hietanen
, Johanna Hynninen
, Kaisa Huhtinen
, Sampsa Hautaniemi
, Anna Vähärautio
, Jing Tang
, Krister Wennerberg
, Tero Aittokallio
:
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer. Briefings Bioinform. 22(6) (2021) - [j20]Julia Casado
, Oskari Lehtonen
, Ville Rantanen, Katja Kaipio, Luca Pasquini
, Antti Häkkinen
, Elenora Petrucci
, Johanna Hynninen
, Sakari Hietanen
, Olli Carpén, Mauro Biffoni, Anniina Färkkilä, Sampsa Hautaniemi
:
Agile workflow for interactive analysis of mass cytometry data. Bioinform. 37(9): 1263-1268 (2021) - [j19]Antti Häkkinen
, Kaiyang Zhang, Amjad Alkodsi
, Noora Andersson, Erdogan Pekcan Erkan, Jun Dai
, Katja Kaipio, Tarja Lamminen
, Naziha Mansuri, Kaisa Huhtinen
, Anna Vähärautio
, Olli Carpén, Johanna Hynninen
, Sakari Hietanen
, Rainer Lehtonen, Sampsa Hautaniemi
:
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples. Bioinform. 37(18): 2882-2888 (2021) - 2020
- [j18]Antti Häkkinen
, Juha Koiranen
, Julia Casado
, Katja Kaipio, Oskari Lehtonen
, Eleonora Petrucci
, Johanna Hynninen
, Sakari Hietanen
, Olli Carpén, Luca Pasquini
, Mauro Biffoni, Rainer Lehtonen, Sampsa Hautaniemi
:
qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets. Bioinform. 36(20): 5086-5092 (2020)
2010 – 2019
- 2019
- [j17]Alejandra Cervera
, Ville Rantanen, Kristian Ovaska, Marko Laakso, Javier Nuñez-Fontarnau, Amjad Alkodsi
, Julia Casado
, Chiara Facciotto
, Antti Häkkinen
, Riku Louhimo, Sirkku Karinen, Kaiyang Zhang, Kari Lavikka
, Lauri Lyly, Maninder Pal Singh, Sampsa Hautaniemi
:
Anduril 2: upgraded large-scale data integration framework. Bioinform. 35(19): 3815-3817 (2019) - 2018
- [j16]Antti Häkkinen
, Amjad Alkodsi
, Chiara Facciotto
, Kaiyang Zhang, Katja Kaipio, Sirpa Leppä
, Olli Carpén, Seija Grénman, Johanna Hynninen
, Sakari Hietanen
, Rainer Lehtonen, Sampsa Hautaniemi
:
Identifying differentially methylated sites in samples with varying tumor purity. Bioinform. 34(18): 3078-3085 (2018) - [j15]Leonardo Martins
, Ramakanth Neeli-Venkata
, Samuel M. D. Oliveira
, Antti Häkkinen
, Andre S. Ribeiro
, José M. Fonseca
:
SCIP: a single-cell image processor toolbox. Bioinform. 34(24): 4318-4320 (2018) - 2016
- [j14]Antti Häkkinen
, Andre S. Ribeiro
:
Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinform. 32(9): 1346-1352 (2016) - [j13]Samuel M. D. Oliveira
, Antti Häkkinen
, Jason Lloyd-Price
, Huy Tran
, Vinodh Kandavalli
, Andre S. Ribeiro
:
Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j12]Antti Häkkinen
, Andre S. Ribeiro
:
Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinform. 31(1): 69-75 (2015) - 2014
- [j11]Antti Häkkinen
, Meenakshisundaram Kandhavelu
, Stefania Garasto
, Andre S. Ribeiro
:
Estimation of fluorescence-tagged RNA numbers from spot intensities. Bioinform. 30(8): 1146-1153 (2014) - 2013
- [j10]Antti Häkkinen
, Anantha Barathi Muthukrishnan, André Mora
, José Manuel Fonseca, Andre S. Ribeiro
:
CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli. Bioinform. 29(13): 1708-1709 (2013) - [j9]Antti Häkkinen
, Huy Tran
, Olli Yli-Harja, Brian P. Ingalls, Andre S. Ribeiro
:
Effects of multimerization on the temporal variability of protein complex abundance. BMC Syst. Biol. 7(S-1): S3 (2013) - 2012
- [j8]Frank Emmert-Streib
, Antti Häkkinen
, Andre S. Ribeiro
:
Detecting sequence dependent transcriptional pauses from RNA and protein number time series. BMC Bioinform. 13: 152 (2012) - [j7]Antti Häkkinen
, Andre S. Ribeiro
:
Evolving kinetics of gene expression in stochastic environments. Comput. Biol. Chem. 37: 11-16 (2012) - [j6]Andre S. Ribeiro
, Antti Häkkinen
, Jason Lloyd-Price
:
Effects of gene length on the dynamics of gene expression. Comput. Biol. Chem. 41: 1-9 (2012) - 2011
- [j5]Meenakshisundaram Kandhavelu
, Henrik Mannerström
, Abhishekh Gupta
, Antti Häkkinen
, Jason Lloyd-Price
, Olli Yli-Harja
, Andre S. Ribeiro
:
In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps. BMC Syst. Biol. 5: 149 (2011) - [j4]Antti Häkkinen, Fred G. Biddle, Olli-Pekka Smolander
, Olli Yli-Harja
, Andre S. Ribeiro
:
Evolutionary Dynamics of a Population of Cells with a Toxin Suppressor Gene. Trans. Comp. Sys. Biology 13: 1-12 (2011) - 2010
- [j3]Andre S. Ribeiro
, Antti Häkkinen
, Shannon Healy, Olli Yli-Harja
:
Dynamical effects of transcriptional pause-prone sites. Comput. Biol. Chem. 34(3): 143-148 (2010) - [j2]Tiina Rajala, Antti Häkkinen
, Shannon Healy, Olli Yli-Harja
, Andre S. Ribeiro
:
Effects of Transcriptional Pausing on Gene Expression Dynamics. PLoS Comput. Biol. 6(3) (2010)
2000 – 2009
- 2009
- [j1]Andre S. Ribeiro
, Olli-Pekka Smolander
, Tiina Rajala, Antti Häkkinen
, Olli Yli-Harja
:
Delayed Stochastic Model of Transcription at the Single Nucleotide Level. J. Comput. Biol. 16(4): 539-553 (2009)
Coauthor Index
![](https://dblp1.uni-trier.de/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-04-24 23:19 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint