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ORCIDB. Jayaram 0001
Person information
- affiliation: Indian Institute of Technology Delhi, Department of Chemistry, New Delhi, India
- affiliation (1989 - 1990): Wesleyan University, Department of Chemistry, Middletown, CT, USA
- affiliation (1987 - 1988): Columbia University, College of Physicians and Surgeons, NY, USA
- affiliation (PhD 1986): City University of New York, Department of Chemistry, NY, USA
Other persons with the same name
- B. Jayaram 0002 — Indian Institute of Technology Madras, Department of Computer Science and Engineering, VLSI Lab, Chennai, India
- B. Jayaram 0003 — VIT University, VIT University, Chennai campus, Chennai Campus, India
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Journal Articles
- 2020
[j17]Ankita Singh, Rahul Kaushik
, Dheeraj Kumar Chaurasia, Manpreet Singh, B. Jayaram:
PvP01-DB: computational structural and functional characterization of soluble proteome of PvP01 strain of Plasmodium vivax. Database J. Biol. Databases Curation 2020 (2020)- [j16]Akhilesh Mishra, Sahil Dhanda, Priyanka Siwach, Shruti Aggarwal, B. Jayaram:
A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics. Bioinform. 36(8): 2375-2384 (2020) - [j15]Anjali Soni, Ruchika Bhat, Bhyravabhotla Jayaram:
Improving the binding affinity estimations of protein-ligand complexes using machine-learning facilitated force field method. J. Comput. Aided Mol. Des. 34(8): 817-830 (2020) - 2019
- [j14]Ali Khosravi, Morteza Kouhsar, Bahram Goliaei, B. Jayaram, Ali Masoudi-Nejad:
Systematic analysis of genes and diseases using PheWAS-Associated networks. Comput. Biol. Medicine 109: 311-321 (2019) - 2018
- [j13]Ankita Singh, Rahul Kaushik, Himani Kuntal, B. Jayaram:
PvaxDB: a comprehensive structural repository of Plasmodium vivax proteome. Database J. Biol. Databases Curation 2018: bay021 (2018) - 2017
- [j12]Anjali Soni, Pooja Khurana, Tanya Singh, Bhyravabhotla Jayaram:
A DNA intercalation methodology for an efficient prediction of ligand binding pose and energetics. Bioinform. 33(10): 1488-1496 (2017) - [j11]Debarati DasGupta, Varun Mandalaparthy, Bhyravabhotla Jayaram:
A component analysis of the free energies of folding of 35 proteins: A consensus view on the thermodynamics of folding at the molecular level. J. Comput. Chem. 38(32): 2791-2801 (2017) - 2016
- [j10]Navneet Tomar, Akhilesh Mishra, Nirotpal Mrinal, B. Jayaram:
Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j9]Suhas V. Vasaikar, Bhyravabhotla Jayaram, James Gomes:
Rapid computation and interpretation of Boolean attractors in biological networks. J. Complex Networks 3(1): 147-157 (2015) - 2014
- [j8]Bhyravabhotla Jayaram, Priyanka Dhingra, Avinash Mishra, Rahul Kaushik, Goutam Mukherjee, Ankita Singh, Shashank Shekhar:
Bhageerath-H: A homology/ab initio hybrid server for predicting tertiary structures of monomeric soluble proteins. BMC Bioinform. 15(S-16): S7 (2014) - 2013
- [j7]Priyanka Dhingra, Bhyravabhotla Jayaram:
A homology/ab initio hybrid algorithm for sampling near-native protein conformations. J. Comput. Chem. 34(22): 1925-1936 (2013) - 2012
- [j6]Bhyravabhotla Jayaram, Tanya Singh, Goutam Mukherjee, Abhinav Mathur, Shashank Shekhar, Vandana Shekhar:
Sanjeevini: a freely accessible web-server for target directed lead molecule discovery. BMC Bioinform. 13(S-17): S7 (2012) - 2011
- [j5]Goutam Mukherjee, Niladri Patra, Poranjyoti Barua, Bhyravabhotla Jayaram:
A fast empirical GAFF compatible partial atomic charge assignment scheme for modeling interactions of small molecules with biomolecular targets. J. Comput. Chem. 32(5): 893-907 (2011) - [j4]Tanya Singh, D. Biswas, Bhyravabhotla Jayaram:
AADS - An Automated Active Site Identification, Docking, and Scoring Protocol for Protein Targets Based on Physicochemical Descriptors. J. Chem. Inf. Model. 51(10): 2515-2527 (2011) - 2006
- [j3]Samrat Dutta, Poonam Singhal, Praveen Agrawal, Raju Tomer, Kritee, Ekta Khurana, Bhyravabhotla Jayaram:
A Physicochemical Model for Analyzing DNA Sequences. J. Chem. Inf. Model. 46(1): 78-85 (2006) - 2002
- [j2]B. Jayaram, K. McConnell, Surjit B. Dixit, A. Das, David L. Beveridge:
Free-energy component analysis of 40 protein-DNA complexes: A consensus view on the thermodynamics of binding at the molecular level. J. Comput. Chem. 23(1): 1-14 (2002) - 1997
- [j1]Nidhi Arora, B. Jayaram:
Strength of hydrogen bonds in helices. J. Comput. Chem. 18(9): 1245-1252 (1997)
Conference and Workshop Papers
- 2010
- [c4]M. Michael Gromiha, N. Saranya, Samuel Selvaraj, B. Jayaram, Kazuhiko Fukui:
Sequence and structural features of binding site residues in protein-protein complexes. BIBM 2010: 53-56 - [c3]Shashank Shekhar, Priyanka Dhingra, Bharat Lakhani, Avinash Mishra, Bhyravabhotla Jayaram:
Bhageerath: A Web Enabled High Performance Computing (HPC) Software Suite for Predicting The Tertiary Structures of Small Globular Proteins Using all Atom Energy Based Ab initio Methods. BIOCOMP 2010: 651-657 - [c2]M. Michael Gromiha, Samuel Selvaraj, B. Jayaram, Kazuhiko Fukui:
Identification and Analysis of Binding Site Residues in Protein Complexes: Energy Based Approach. ICIC (1) 2010: 626-633 - 2006
- [c1]Sandhya Shenoy, Bhyravabhotla Jayaram, N. Latha, Pooja Narang, Tarun Jain, Kumkum Bhushan, Saher Afshan Shaikh, Surojit Bose, Pankaj Sharma, Poonam Singhal, A. Gandhimathi, Praveen Agrawal, Vidhu Pandey, Samrat Dutta, Gurvisha Sandhu, Anuj Gupta, Shashank Shekhar, Shailesh Tripathi:
From Gene to Drug: A Proof of Concept for a Plausible Computational Pathway. ISDA (1) 2006: 1147-1152
Reference Works
- 2019
- [r1]Rahul Kaushik, Ankita Singh, B. Jayaram:
Ab initio Protein Structure Prediction. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 62-76
Informal and Other Publications
- 2013
- [i1]Aditya K. Padhi, Suhas V. Vasaikar, Bhyravabhotla Jayaram, James Gomes:
ANGDelMut - a web-based tool for predicting and analyzing functional loss mechanisms of deleterious angiogenin mutations causing amyotrophic lateral sclerosis. F1000Research 2: 227 (2013)
Coauthor Index
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